Revision 892efc69
Added by Andreas Kohlbecker almost 14 years ago
| cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonServiceImpl.java | ||
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| 14 | 14 |
import java.util.Collections; |
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import java.util.Comparator; |
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import java.util.HashSet; |
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import java.util.Iterator; |
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import java.util.List; |
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import java.util.Set; |
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import java.util.UUID; |
| ... | ... | |
| 32 | 33 |
import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary; |
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import eu.etaxonomy.cdm.model.common.RelationshipBase; |
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import eu.etaxonomy.cdm.model.common.UuidAndTitleCache; |
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import eu.etaxonomy.cdm.model.description.CommonTaxonName; |
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import eu.etaxonomy.cdm.model.description.DescriptionBase; |
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import eu.etaxonomy.cdm.model.common.RelationshipBase.Direction; |
|
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import eu.etaxonomy.cdm.model.description.DescriptionElementBase; |
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import eu.etaxonomy.cdm.model.description.TaxonDescription; |
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import eu.etaxonomy.cdm.model.media.Media; |
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import eu.etaxonomy.cdm.model.media.MediaRepresentation; |
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import eu.etaxonomy.cdm.model.media.MediaUtils; |
|
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import eu.etaxonomy.cdm.model.name.HomotypicalGroup; |
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import eu.etaxonomy.cdm.model.name.NonViralName; |
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import eu.etaxonomy.cdm.model.name.Rank; |
| ... | ... | |
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for(TaxonDescription oldDescription : oldTaxon.getDescriptions()){
|
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|
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TaxonDescription newDescription = TaxonDescription.NewInstance(newAcceptedTaxon); |
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newDescription.setTitleCache("Description copied from " + oldTaxon + ". Old title: " + oldDescription.getTitleCache());
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|
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newDescription.setTitleCache("Description copied from " + oldTaxon + ". Old title: " + oldDescription.getTitleCache(), true);
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|
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|
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for(DescriptionElementBase element : oldDescription.getElements()){
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newDescription.addElement(element); |
| ... | ... | |
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// store the synonyms name |
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TaxonNameBase newAcceptedTaxonName = synonym.getName(); |
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|
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Set<SynonymRelationship> synrels = acceptedTaxon.getSynonymRelations(); |
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Iterator<SynonymRelationship> synRelIterator = synrels.iterator(); |
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SynonymRelationshipType type = null; |
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while (synRelIterator.hasNext()){
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SynonymRelationship synRel = synRelIterator.next(); |
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if (synRel.getSynonym().equals(synonym)){
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type = synRel.getType(); |
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break; |
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} |
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} |
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|
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// remove synonym from oldAcceptedTaxon |
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acceptedTaxon.removeSynonym(synonym); |
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|
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// make synonym name the accepted taxons name |
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acceptedTaxon.setName(newAcceptedTaxonName); |
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synonym.setName(oldAcceptedTaxonName); |
|
| 283 | 296 |
|
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// add the new synonym to the acceptedTaxon |
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if(synonymRelationshipType == null){
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synonymRelationshipType = SynonymRelationshipType.SYNONYM_OF(); |
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//synonymRelationshipType = SynonymRelationshipType.SYNONYM_OF(); |
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synonymRelationshipType = type; |
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} |
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if (type.equals(SynonymRelationshipType.HOMOTYPIC_SYNONYM_OF())){
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acceptedTaxon.addHomotypicSynonym(synonym, null, null); |
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}else{
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acceptedTaxon.addSynonymName(oldAcceptedTaxonName, synonymRelationshipType); |
|
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} |
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|
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acceptedTaxon.addSynonymName(oldAcceptedTaxonName, synonymRelationshipType); |
|
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} |
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|
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/* |
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* (non-Javadoc) |
| ... | ... | |
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long numberTaxaResults = 0L; |
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|
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Class<? extends TaxonBase> clazz = null; |
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List<String> propertyPath = new ArrayList<String>(); |
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propertyPath.addAll(configurator.getTaxonPropertyPath()); |
|
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if ((configurator.isDoTaxa() && configurator.isDoSynonyms())) {
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clazz = TaxonBase.class; |
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//propertyPath.addAll(configurator.getTaxonPropertyPath()); |
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//propertyPath.addAll(configurator.getSynonymPropertyPath()); |
|
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} else if(configurator.isDoTaxa()) {
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clazz = Taxon.class; |
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//propertyPath = configurator.getTaxonPropertyPath(); |
|
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} else if (configurator.isDoSynonyms()) {
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clazz = Synonym.class; |
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//propertyPath = configurator.getSynonymPropertyPath(); |
|
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} |
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|
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if(clazz != null){
|
| ... | ... | |
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taxa = dao.getTaxaByName(clazz, |
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configurator.getSearchString(), configurator.getTaxonomicTree(), configurator.getMatchMode(), |
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configurator.getNamedAreas(), configurator.getPageSize(), |
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configurator.getPageNumber(), configurator.getTaxonPropertyPath());
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configurator.getPageNumber(), propertyPath);
|
|
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} |
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} |
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|
| ... | ... | |
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|
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} |
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|
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//FIXME does not work any more after model change |
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logger.warn("Sort does currently not work on identifiable entities due to model changes (duplicated implementation of the Comparable interface).");
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//Collections.sort(results); |
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return new DefaultPagerImpl<IdentifiableEntity> |
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return new DefaultPagerImpl<IdentifiableEntity> |
|
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(configurator.getPageNumber(), numberOfResults, configurator.getPageSize(), results); |
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} |
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|
| ... | ... | |
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for(Media media : descElem.getMedia()){
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|
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//find the best matching representation |
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medRep.add(media.findBestMatchingRepresentation(size, height, widthOrDuration, mimeTypes));
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medRep.add(MediaUtils.findBestMatchingRepresentation(media, size, height, widthOrDuration, mimeTypes));
|
|
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|
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} |
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} |
| ... | ... | |
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return this.dao.findIdenticalTaxonNames(propertyPath); |
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} |
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public List<TaxonNameBase> findIdenticalTaxonNameIds(List<String> propertyPath) {
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return this.dao.findIdenticalNamesNew(propertyPath); |
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} |
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public String getPhylumName(TaxonNameBase name){
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return this.dao.getPhylumName(name); |
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} |
| ... | ... | |
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} |
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|
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} |
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public long deleteSynonymRelationships(Synonym syn) {
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return dao.deleteSynonymRelationships(syn); |
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} |
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public List<SynonymRelationship> listSynonymRelationships( |
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TaxonBase taxonBase, SynonymRelationshipType type, Integer pageSize, Integer pageNumber, |
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List<OrderHint> orderHints, List<String> propertyPaths, Direction direction) {
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Integer numberOfResults = dao.countSynonymRelationships(taxonBase, type, direction); |
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List<SynonymRelationship> results = new ArrayList<SynonymRelationship>(); |
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if(numberOfResults > 0) { // no point checking again
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results = dao.getSynonymRelationships(taxonBase, type, pageSize, pageNumber, orderHints, propertyPaths, direction); |
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} |
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return results; |
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} |
|
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} |
Also available in: Unified diff
merging /branches/cdmlib/SPRINT-Chichorieae1/ to trunk