/cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/pesi/out/PesiSourceExport.java - Diff - EDIT - EDIT Project Management

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Revision 892efc69

Added by Andreas Kohlbecker almost 14 years ago

ID 892efc6951acfa51b009e26798a12033d2a6335b
Parent e0a7671f
Child 667ac7fc, 9e9de24f

merging /branches/cdmlib/SPRINT-Chichorieae1/ to trunk

     import eu.etaxonomy.cdm.io.berlinModel.out.mapper.MethodMapper;
     import eu.etaxonomy.cdm.io.common.Source;
     import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
     import eu.etaxonomy.cdm.io.erms.ErmsTransformer;
     import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
     import eu.etaxonomy.cdm.model.common.Annotation;
     import eu.etaxonomy.cdm.model.common.CdmBase;
     import eu.etaxonomy.cdm.model.common.Extension;
     import eu.etaxonomy.cdm.model.common.IdentifiableSource;
     import eu.etaxonomy.cdm.model.reference.ReferenceBase;
-...
     			// PESI: Clear the database table Source.
     			doDelete(state);
     			// Create the database table that hosts state information
     			state.createStateTables();
     			// CDM: Get the number of all available references.
     //			int maxCount = getReferenceService().count(null);
     //			logger.error("Total amount of " + maxCount + " " + pluralString + " will be exported.");
     			// Get specific mappings: (CDM) Reference -> (PESI) Source
     			PesiExportMapping mapping = getMapping();
-...
     			mapping.initialize(state);
     			// PESI: Create the Sources
     			// TODO: Store CDM2PESI identifier pairs for later use in other export classes - PesiExportState
     			int count = 0;
     			int pastCount = 0;
     			TransactionStatus txStatus = null;
-...
     	 */
     	@SuppressWarnings("unused")
     	private static Integer getIMIS_Id(ReferenceBase<?> reference) {
     		Integer result = null;
     		if (reference != null) {
     			Set<Extension> extensions = reference.getExtensions();
     			for (Extension extension : extensions) {
     				try {
     					if (extension.getType().getUuid().equals(ErmsTransformer.IMIS_UUID)) {
     						// IMIS_ID found
     						result = Integer.parseInt(extension.getValue().trim());
+    					}
     				} catch (NumberFormatException e) {
     					logger.warn("String could not be parsed to int: " + extension.getValue() + " / Reference: " + reference.getUuid() + " (" + reference.getTitleCache() + ")");
     					result = null;
+    				}
+    			}
+    		}
     		return result;
     		// TODO
     		// Where is the IMIS_Id from an ERMS import stored in CDM?
     		return null;
+    	}
     	/**
-...
     	 */
     	@SuppressWarnings("unused")
     	private static String getName(ReferenceBase<?> reference) {
     		return reference.getTitle();
     		if (reference != null) {
     			return reference.getTitle();
     		} else {
     			return null;
+    		}
+    	}
     	/**
-...
     	 */
     	@SuppressWarnings("unused")
     	private static String getAuthorString(ReferenceBase<?> reference) {
     		TeamOrPersonBase team = reference.getAuthorTeam();
     		if (team != null) {
     //			return team.getTitleCache();
     			return team.getNomenclaturalTitle();
     		} else {
     			return null;
     		String result = null;
     		if (reference != null) {
     			TeamOrPersonBase team = reference.getAuthorTeam();
     			if (team != null) {
     	//			result = team.getTitleCache();
     				result = team.getNomenclaturalTitle();
     			} else {
     				result = null;
+    			}
+    		}
     		return result;
+    	}
     	/**
-...
     	 */
     	@SuppressWarnings("unused")
     	private static String getNomRefCache(ReferenceBase<?> reference) {
     		return reference.getTitleCache();
     		if (reference != null) {
     			return reference.getTitleCache();
     		} else {
     			return null;
+    		}
+    	}
     	/**
-...
     	@SuppressWarnings("unused")
     	private static String getNotes(ReferenceBase<?> reference) {
     		// TODO
     		String result = null;
     		if (reference != null) {
     			Set<Annotation> annotations = reference.getAnnotations();
     			if (annotations.size() == 1) {
     				result = annotations.iterator().next().getText();
     			} else {
     				logger.warn("Reference has more than one Annotation: " + reference.getUuid() + " (" + reference.getTitleCache() + ")");
+    			}
+    		}
     		return result;
     		return null;
+    	}
     	/**
-...
     	@SuppressWarnings("unused")
     	private static String getRefIdInSource(ReferenceBase<?> reference) {
     		String result = null;
     		Set<IdentifiableSource> sources = reference.getSources();
     		if (sources.size() == 1) {
     			result = sources.iterator().next().getIdInSource();
     		} else {
     			logger.warn("Reference has more than one source: " + reference.getUuid() + " (" + reference.getTitleCache() + ")");
     		if (reference != null) {
     			Set<IdentifiableSource> sources = reference.getSources();
     			if (sources.size() == 1) {
     				result = sources.iterator().next().getIdInSource();
     			} else if (sources.size() > 1) {
     				logger.warn("Reference has multiple IdentifiableSources: " + reference.getUuid() + " (" + reference.getTitleCache() + ")");
     				int count = 1;
     				for (IdentifiableSource source : sources) {
     					result += source.getIdInSource();
     					if (count < sources.size()) {
     						result += "; ";
+    					}
     					count++;
+    				}
+    			}
+    		}
     		return result;
+    	}
-...
     	 */
     	@SuppressWarnings("unused")
     	private static String getOriginalDB(ReferenceBase<?> reference) {
     		String result = null;
     		String result = "";
     		if (reference != null) {
     			for (IdentifiableSource source : reference.getSources()) {
     				ReferenceBase citation = source.getCitation();
     				if (source != null && citation != null) {
     					result = citation.getTitleCache();  //or just title
     			Set<IdentifiableSource> sources = reference.getSources();
     			if (sources.size() == 1) {
     				ReferenceBase citation = sources.iterator().next().getCitation();
     				if (citation != null) {
     					result = PesiTransformer.databaseString2Abbreviation(citation.getTitleCache()); //or just title
     				} else {
     					logger.warn("OriginalDB can not be determined because the citation of this source is NULL: " + sources.iterator().next().getUuid());
+    				}
     			} else if (sources.size() > 1) {
     				logger.warn("Taxon has multiple IdentifiableSources: " + reference.getUuid() + " (" + reference.getTitleCache() + ")");
     				int count = 1;
     				for (IdentifiableSource source : sources) {
     					ReferenceBase citation = source.getCitation();
     					if (citation != null) {
     						result += PesiTransformer.databaseString2Abbreviation(citation.getTitleCache());
     						if (count < sources.size()) {
     							result += "; ";
+    						}
     						count++;
+    					}
+    				}
     			} else {
     				result = null;
+    			}
+    		}
     		return result;
+    	}

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Revision 892efc69

Added by Andreas Kohlbecker almost 14 years ago