Revision 892efc69
Added by Andreas Kohlbecker almost 14 years ago
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/excel/taxa/NormalExplicitImport.java | ||
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import eu.etaxonomy.cdm.model.taxon.TaxonBase; |
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import eu.etaxonomy.cdm.model.taxon.TaxonomicTree; |
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import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException; |
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import eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl; |
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/** |
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* @author a.babadshanjan |
| ... | ... | |
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// Create the taxon name object depending on the setting of the nomenclatural code |
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// in the configurator (botanical code, zoological code, etc.) |
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NomenclaturalCode nc = getConfigurator().getNomenclaturalCode(); |
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TaxonNameBase taxonNameBase;
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NonViralName taxonNameBase;
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if (nc == NomenclaturalCode.ICVCN){
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logger.warn("ICVCN not yet supported");
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return false; |
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}else{
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taxonNameBase = nc.getNewTaxonNameInstance(rank); |
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NonViralName nonViralName = (NonViralName)taxonNameBase; |
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taxonNameBase =(NonViralName) nc.getNewTaxonNameInstance(rank);
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//NonViralName nonViralName = (NonViralName)taxonNameBase;
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//TODO parse name |
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nonViralName.setNameCache(taxonNameStr); |
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NonViralNameParserImpl parser = NonViralNameParserImpl.NewInstance(); |
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taxonNameBase = parser.parseFullName(taxonNameStr, nc, rank); |
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taxonNameBase.setNameCache(taxonNameStr); |
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// Create the author |
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if (CdmUtils.isNotEmpty(authorStr)) {
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//TODO parse authors |
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//if (state.getAuthor(authorStr)!= null) {
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nonViralName.setAuthorshipCache(authorStr);
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taxonNameBase.setAuthorshipCache(authorStr);
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// } else {
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// state.putAuthor(authorStr, null); |
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// Person author = Person.NewTitledInstance(authorStr); |
| ... | ... | |
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Integer childId = state.getTaxonLight().getId(); |
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Taxon parentTaxon = (Taxon)state.getTaxonBase(parentId); |
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Taxon taxon = (Taxon)state.getTaxonBase(childId); |
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if (CdmUtils.isNotEmpty(taxonNameStr)) {
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if (nameStatus != null && nameStatus.equalsIgnoreCase("invalid")){
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//add synonym relationship |
| ... | ... | |
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// Add the parent relationship |
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if (state.getTaxonLight().getParentId() != 0) {
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if (parentTaxon != null) {
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Taxon taxon = (Taxon)state.getTaxonBase(childId); |
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//Taxon taxon = (Taxon)state.getTaxonBase(childId);
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ReferenceBase citation = state.getConfig().getSourceReference(); |
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String microCitation = null; |
| ... | ... | |
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//do nothing (parent == 0) no parent exists |
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} |
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} |
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} else {
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// add common name to parent taxon |
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} |
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if (CdmUtils.isNotEmpty(commonNameStr)) |
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{ // add common name to taxon
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Language language = getTermService().getLanguageByIso(state.getTaxonLight().getLanguage()); |
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if (language == null && CdmUtils.isNotEmpty(state.getTaxonLight().getLanguage()) ){
|
| ... | ... | |
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} |
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CommonTaxonName commonTaxonName = CommonTaxonName.NewInstance(commonNameStr, language); |
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try {
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TaxonDescription taxonDescription = getDescription(parentTaxon);
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TaxonDescription taxonDescription = getDescription(taxon);
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taxonDescription.addElement(commonTaxonName); |
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logger.info("Common name " + commonNameStr + " added to " + parentTaxon.getTitleCache());
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logger.info("Common name " + commonNameStr + " added to " + taxon.getTitleCache());
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} catch (ClassCastException ex) {
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logger.error(taxonNameStr + " is not a taxon instance."); |
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} |
| ... | ... | |
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if (tree == null){
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tree = makeTree(state, sec); |
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} |
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success = tree.addParentChild(parentTaxon, childTaxon, citation, microCitation);
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success &= (null != tree.addParentChild(parentTaxon, childTaxon, citation, microCitation));
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return success; |
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} |
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