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// $Id$
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.markup;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase;
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import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
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import eu.etaxonomy.cdm.model.common.MarkerType;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.PresenceTerm;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.location.NamedAreaLevel;
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import eu.etaxonomy.cdm.model.location.TdwgArea;
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/**
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* @author a.mueller
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* @created 01.03.2010
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* @version 1.0
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*/
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public class MarkupTransformer extends InputTransformerBase {
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(MarkupTransformer.class);
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//preliminary
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public static final UUID uuidKalimantan = UUID.fromString("05c6bce3-2e55-48cb-a414-707e936066d1");
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public static final UUID uuidBorneo = UUID.fromString("e615e7e6-5b64-4903-b794-816baab689b3");
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// public static final UUID uuidCelebes = UUID.fromString("");
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public static final UUID uuidMoluccas = UUID.fromString("0ac8fc74-a081-45e5-b96d-aad367b5f48b");
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public static final UUID uuidPeninsularMalaysia = UUID.fromString("9f95af33-ae9e-4031-92f7-9f79d22eecf2");
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public static final UUID uuidJava = UUID.fromString("36b93871-0bee-4380-b47e-56a843ce6aa3");
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public static final UUID uuidBismarckArchipelago = UUID.fromString("d9a11144-447c-4e72-b75f-9daeb254e7c4");
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// public static final UUID uuidNewIreland = UUID.fromString("");
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public static final UUID uuidSumatra = UUID.fromString("4395d5e0-64e2-4309-a2ec-b1240919c34d");
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// public static final UUID uuidBangka = UUID.fromString("");
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public static final UUID uuidSabah = UUID.fromString("8d34b675-7de1-4623-a16a-1e0ca989df0c");
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public static final UUID uuidBali = UUID.fromString("3cc15dc7-bc55-4a9b-85af-e1eb733ad845");
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public static final UUID uuidPhilippines = UUID.fromString("9dee4b0d-d864-4b6f-bd41-39a1ea7c56c3");
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//extension type uuids
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public static final UUID uuidTaxonTitle = UUID.fromString("5d9ca987-81f1-4d6c-b06a-eaa8311ca249");
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public static final UUID uuidWriterExtension = UUID.fromString("43f988cb-bc53-4324-a702-c8f920656975");
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//annotation type uuids
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public static final UUID uuidFootnote = UUID.fromString("b91fab29-7d26-4277-b549-262da0d901b1");
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public static final UUID uuidWriterAnnotation = UUID.fromString("df73df4a-93a1-4d95-a552-1cebe26db51b");
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//marker type uuid
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// public static final UUID uuidExcludedTaxon = UUID.fromString("e729a22d-8c94-4859-9f91-3e3ae212c91d");
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public static final UUID uuidIncompleteTaxon = UUID.fromString("cb34d525-de64-4569-b277-3429ec49a09f");
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public static final UUID uuidFeaturePlaceholder = UUID.fromString("89568794-375e-4a02-b75d-bd65601fb877");
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//named ared level uuids
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public static final UUID uuidRegion = UUID.fromString("06d3a74d-cf2e-4842-8c89-87722b9486a4");
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public static final UUID uuidWorld = UUID.fromString("69520b33-6381-454e-bb8f-0df11c3b3a67");
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public static final UUID uuidCounty = UUID.fromString("c2882e13-88dc-42ac-b89c-2ee404e22d81");
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public static final UUID uuidContinent = UUID.fromString("1051c9bb-d0ab-4a71-ab15-afdab82c2bdc");
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public static final UUID uuidDistrict = UUID.fromString("1b778ba8-ba5f-47a9-ad67-222826f96863");
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public static final UUID uuidLocality = UUID.fromString("224a4140-da1f-4046-91bb-fb948916d797");
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public static final UUID uuidLevelOther = UUID.fromString("4b483cc8-b42d-40ba-9cc7-a656faf629e2");
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public static final UUID uuidContinentalRegion = UUID.fromString("06d3a74d-cf2e-4842-8c89-87722b9486a4");
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//feature uuids
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public static final UUID uuidFigure = UUID.fromString("5165cd6a-9b31-4a1f-8b30-04ab740c502c");
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public static final UUID uuidFigures = UUID.fromString("6dfb4e78-c67e-410c-8989-c1fb1295abf6");
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public static final UUID uuidExtractedHabitat = UUID.fromString("d80511d2-a76c-48b8-b3aa-5fbd4a58fe5c");
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// public static final UUID uuidHabit = UUID.fromString("03487108-173a-4335-92be-05076af29155");
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public static final UUID uuidHabitat = UUID.fromString("fb16929f-bc9c-456f-9d40-dec987b36438");
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public static final UUID uuidHabitatEcology = UUID.fromString("9fdc4663-4d56-47d0-90b5-c0bf251bafbb");
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public static final UUID uuidChromosomes = UUID.fromString("c4a60319-4978-4692-9545-58d60cf8379e");
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public static final UUID uuidPhylogeny = UUID.fromString("8bcffbeb-a849-4222-83f9-bfcbbc3baef9");
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public static final UUID uuidHistory = UUID.fromString("6f9f0316-1c27-4e17-b96a-51332521f74e");
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public static final UUID uuidCultivation = UUID.fromString("f10f34fb-53b9-43c2-bfd6-05ea475e8e0f");
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public static final UUID uuidNote = UUID.fromString("b9af1489-6b68-497f-8d4b-260a9f886827");
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public static final UUID uuidNotes = UUID.fromString("e31bb420-f39e-493d-b452-dd5e63dda443");
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public static final UUID uuidTaxonomy = UUID.fromString("0c80c395-038b-4bd6-9ff4-48f4511754b6");
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public static final UUID uuidMorphology = UUID.fromString("1b5bfe4a-d075-4e38-ab63-3c6b6bb5846a");
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public static final UUID uuidPalynology = UUID.fromString("50ddb15e-aa25-4933-8449-c321dccad4e7");
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public static final UUID uuidWoodAnatomy = UUID.fromString("b2ff70bc-f7b9-4aa8-8a4c-8f41ad6f8ada");
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public static final UUID uuidLeafAnatomy = UUID.fromString("3633debe-1c00-4f43-98f7-38b950b3880d");
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public static final UUID uuidChromosomeNumbers = UUID.fromString("6f677e98-d8d5-4bc5-80bf-affdb7e3945a");
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public static final UUID uuidPhytochemistryAndChemotaxonomy = UUID.fromString("ea76e235-a845-4f25-af07-1eee91547ef5");
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public static final UUID uuidPollenMorphology = UUID.fromString("4a00d8b2-60d7-4891-b5e7-3244278d849d");
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public static final UUID uuidVegetativeMorphologyAndAnatomy = UUID.fromString("282d1d8e-47cf-4c34-86ff-772e78b71058");
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public static final UUID uuidFlowerMorphology = UUID.fromString("cbe3ca08-0407-4a67-bf35-665e6fb3efdb");
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public static final UUID uuidPollination = UUID.fromString("0d601a3d-c444-4a7c-940b-be0a9902673f");
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public static final UUID uuidLifeCycle = UUID.fromString("fcb5d9a7-ad56-401c-b179-5f017342f3b3");
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public static final UUID uuidFruitsAndEmbryology = UUID.fromString("f22ff5ff-8cf6-4fcc-8fd2-bfdc07cb7952");
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public static final UUID uuidDispersal = UUID.fromString("1349d543-929a-4048-89dd-5006880a4cb2");
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public static final UUID uuidPhytochemistry = UUID.fromString("3466fdb9-360f-467e-9bd2-be8d997d1361");
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public static final UUID uuidFossils = UUID.fromString("ccbf72ff-ab72-4f41-8c60-77100e14b6b0");
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public static final UUID uuidMorphologyAndAnatomy = UUID.fromString("e18a82c2-8961-409f-8b8e-0502225ea43f");
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public static final UUID uuidEmbryology = UUID.fromString("09b89b41-c993-45a6-b461-799a90e283f8");
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public static final UUID uuidCytology = UUID.fromString("cc28bedb-8d9f-457c-ac5f-5f019edb214e");
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public static final UUID uuidLeaflets = UUID.fromString("0efcfbb5-7f7a-454f-985e-50cea6523fef");
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public static final UUID uuidLeaves = UUID.fromString("378c6d5f-4f8a-4769-b054-50ddaff6f080");
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public static final UUID uuidBranchlets = UUID.fromString("e63af3b4-aaff-4b4d-a8fe-3b13b79974c8");
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public static final UUID uuidLifeform = UUID.fromString("db9228d3-8bbf-4460-abfe-0b1326c82f8e");
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public static final UUID uuidInflorescences = UUID.fromString("c476f5fb-dc06-4408-af36-f48e625f5767");
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public static final UUID uuidMaleInflorescences = UUID.fromString("374fa3fe-70c2-4ec9-a611-97c62288aeba");
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public static final UUID uuidFemaleInflorescences = UUID.fromString("179af784-850c-4187-ba1f-cdc9f68970ef");
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public static final UUID uuidFlowers = UUID.fromString("7fd80f15-9abf-44e7-b55a-be264b9dd7ac");
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public static final UUID uuidSepals = UUID.fromString("d6867f7c-68c9-4b7c-9094-862bdfe1e064");
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public static final UUID uuidOuterSepals = UUID.fromString("e95b65f8-656f-4770-b716-2824cb4b54b6");
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public static final UUID uuidAnthers = UUID.fromString("3f40ea65-320b-4875-86e6-f499017b4bc6");
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public static final UUID uuidPetals = UUID.fromString("ddcba956-a461-4e66-a996-a4db808d1d9f");
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public static final UUID uuidPetal = UUID.fromString("271c2e09-5965-4c03-9ab5-6ed31a0e7e17");
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public static final UUID uuidDisc = UUID.fromString("a98875f5-fdb8-4432-98dd-3840552bf701");
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public static final UUID uuidStamens = UUID.fromString("88a6e1ff-aba2-49a1-82c5-b6a20c44d825");
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public static final UUID uuidFruits = UUID.fromString("e19b1b3c-e3fe-4496-a254-46f01ab514b3");
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public static final UUID uuidIndumentum = UUID.fromString("5737a803-397e-43e9-a278-b195941b824b");
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public static final UUID uuidSeeds = UUID.fromString("c7bb0c58-5817-4fcf-9bea-e67224e8cd8f");
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public static final UUID uuidFlowering = UUID.fromString("e6f274b9-25ca-4d49-b264-50346350df0d");
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public static final UUID uuidBracts = UUID.fromString("7e1f2b3e-caa5-4e12-af4c-3fc379cea89f");
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public static final UUID uuidPedicels = UUID.fromString("fdb43c85-c3dd-4d13-b5e7-51cca60d25b1");
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public static final UUID uuidPistil = UUID.fromString("51df329b-2b2b-4f45-960c-bf4430be5910");
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public static final UUID uuidOvary = UUID.fromString("0757d8bc-d91c-4482-bde0-d239b4122934");
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public static final UUID uuidTwigs = UUID.fromString("e1eb9d5e-1397-4a4e-84e7-483e77822c6b");
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public static final UUID uuidBranches = UUID.fromString("7c515e4a-9a6f-4d4d-9af7-c0c4039dcf27");
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public static final UUID uuidInfructescences = UUID.fromString("e60fbb4f-cf4e-4331-9dcd-d65f640eb669");
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public static final UUID uuidPistillode = UUID.fromString("7c91c9ae-ad30-4aca-96b8-249c154fb296");
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public static final UUID uuidFlower = UUID.fromString("27a04dae-3a46-41ec-a36f-866561a0f8db");
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public static final UUID uuidOvules = UUID.fromString("e118915a-0d6c-41b9-9385-9f18d852e0bc");
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//= female Flowers
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// public static final UUID uuidFemale = UUID.fromString("fe708a69-150d-41fb-b391-dc8d9c1b8d1a");
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public static final UUID uuidStyle = UUID.fromString("6b5ae8fb-72e4-4c60-9bbe-0abc9edb09c3");
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public static final UUID uuidArillode = UUID.fromString("d113362e-06cb-42c8-96c7-4df6bef9cb29");
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public static final UUID uuidFruit = UUID.fromString("05442d43-045d-4632-9a1e-d2eada227490");
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public static final UUID uuidBranch = UUID.fromString("71b7507c-9d04-49c9-b155-398b957b4aea");
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public static final UUID uuidInflorescence = UUID.fromString("736cd249-f2dc-4fe3-a127-2c7582e330f6");
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public static final UUID uuidCalyx = UUID.fromString("48a7fa54-1aef-4209-8df0-26a8148156af");
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public static final UUID uuidSeedling = UUID.fromString("7d977209-1579-44c9-a996-9eca1fb93cfc");
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public static final UUID uuidStaminodes = UUID.fromString("4c135e5d-805b-4591-b21f-bbc34e275ef6");
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public static final UUID uuidFilaments = UUID.fromString("5d61bc65-4621-488a-8ea9-11f6e4cd2c66");
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//key
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public static final UUID uuidPseudoStipules = UUID.fromString("a8e3002a-5a3a-4098-9439-90dff56deeed");
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public static final UUID uuidWallOfFruitInside = UUID.fromString("c9424f3a-91fd-4696-8207-c07b2cdd5902");
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public static final UUID uuidBuds = UUID.fromString("a2f1861d-50ba-4216-80f6-7889e4785cd5");
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public static final UUID uuidStems = UUID.fromString("80b542d6-c2ec-4bc9-95c1-a1b9429691a7");
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public static final UUID uuidTrees = UUID.fromString("03a2f775-e7c7-4487-a725-51b290084e14");
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public static final UUID uuidStigma = UUID.fromString("e68292cb-3711-4129-9b1a-992fb17059e3");
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public static final UUID uuidPetiole = UUID.fromString("7e926909-5983-490e-aebe-532a329fb21f");
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public static final UUID uuidAxillary = UUID.fromString("aa1eee6e-dd2f-464e-95ed-79cc5313e8d1");
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public static final UUID uuidPetiolules = UUID.fromString("9db0732d-35f9-476b-8824-727840faabb9");
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public static final UUID uuidMaleFlowers = UUID.fromString("036ed3cb-4598-4ccd-ae77-e66dff4274f8");
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public static final UUID uuidYoungInflorescences = UUID.fromString("c92baa8b-b20e-44ec-bbc4-5990d548431c");
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public static final UUID uuidSepal = UUID.fromString("7af26081-17c8-4966-9d58-affe26b8dc34");
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public static final UUID uuidThyrses = UUID.fromString("74af0814-5f11-4c1d-82c2-06ed97471fc5");
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public static final UUID uuidThyrsus = UUID.fromString("ff0ddbd3-6049-416e-91b5-fa8fe42621dd");
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public static final UUID uuidBark = UUID.fromString("a8cd7ed7-0e55-4aa6-8a6f-52bf497e1602");
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public static final UUID uuidEndophyticBody = UUID.fromString("5b6c3525-bc9a-4ae9-b16b-814ea0ff3ffc");
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public static final UUID uuidFloweringBuds = UUID.fromString("b3c8cd80-0eea-4747-83f9-32f2418c34ff");
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//VOL 13.1
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public static final UUID uuidPerianth = UUID.fromString("bd1480bb-ce44-495f-a462-98db4ac80530");
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public static final UUID uuidScales = UUID.fromString("bd1480bb-ce44-495f-a462-98db4ac80530");
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public static final UUID uuidPerigoneTube = UUID.fromString("d1799423-31ce-4525-b0ba-8d7cc9240abf");
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public static final UUID uuidPerigoneLobes = UUID.fromString("e309e1e3-8f60-4478-9b89-ca5069bc1622");
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public static final UUID uuidPerigone = UUID.fromString("f026fc87-5fc6-4559-a7e5-e8832c20033d");
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public static final UUID uuidCorolla = UUID.fromString("9ff17ff9-cb59-4ad7-bfa1-1d67935e567f");
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public static final UUID uuidAnnulus = UUID.fromString("d9b93acb-9b49-45ef-8661-09e00081931f");
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public static final UUID uuidFemaleFlowers = UUID.fromString("2e06cea2-5993-417c-8d0d-81cb571aa17a");
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public static final UUID uuidCymes = UUID.fromString("ab13622f-fc90-49de-b51c-c1b00ed98728");
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public static final UUID uuidNutlets = UUID.fromString("d9675d0c-0af7-4378-aeb7-7216cdff7289");
|
|
196
|
public static final UUID uuidStem = UUID.fromString("39f35516-045a-4f10-a3a0-c25f47e30b7d");
|
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197
|
public static final UUID uuidPollen = UUID.fromString("7c0df742-d1b3-4174-976a-fa04a2664aba");
|
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198
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public static final UUID uuidSecondaryXylem = UUID.fromString("f2e07699-edfc-404b-9504-52a8be014131");
|
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199
|
public static final UUID uuidChromosomeNumber = UUID.fromString("0000feeb-ca15-4207-954b-9e3aa1112950");
|
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200
|
public static final UUID uuidStemLeaves = UUID.fromString("b5ef43c8-e98b-4e06-b322-c214100370ad");
|
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201
|
public static final UUID uuidSeed = UUID.fromString("18c725f5-6ffc-4c57-a209-3393b6c28a18");
|
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202
|
public static final UUID uuidDrupes = UUID.fromString("ec664134-144b-425a-9f7b-ffccd0a4bf1a");
|
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203
|
public static final UUID uuidFruitingAxes = UUID.fromString("a246d13e-b809-4180-ab01-f6ac1b2d2b46");
|
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204
|
public static final UUID uuidAndroecium = UUID.fromString("ad600c18-b04c-4c61-b71e-ce6e48de508e");
|
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205
|
public static final UUID uuidGynoecium = UUID.fromString("02c81ac2-3fd7-4daa-9f62-ffb2d6776f44");
|
|
206
|
public static final UUID uuidFlowerTube = UUID.fromString("4328c13c-f80c-4f16-8c53-b0b3d8ec3cb7");
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207
|
public static final UUID uuidAnther = UUID.fromString("4c7cf621-11f7-4102-b49a-caa493364707");
|
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208
|
public static final UUID uuidFlowerBearingStems = UUID.fromString("86ee899f-af71-4b51-aa1a-2666bab79cf0");
|
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209
|
public static final UUID uuidFloweringBranchlets = UUID.fromString("e0364345-764c-4b39-943a-fad1eac0fe9e");
|
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210
|
public static final UUID uuidWood = UUID.fromString("e44b3268-ca49-4400-90f7-98e17412fe92");
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211
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212
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213
|
//PHYTOCHEMISTRY AND CHEMOTAXONOMY
|
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214
|
public static final UUID uuidLeafPhenolics = UUID.fromString("4ae0580e-601e-4961-8220-b98876cb7fbf");
|
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215
|
public static final UUID uuidAlkaloids = UUID.fromString("a727f4f4-b2c3-4cac-9edd-138201470396");
|
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216
|
public static final UUID uuidIridoidGlucosides = UUID.fromString("d858c9d7-e870-4e4e-a52a-f6533599c9d7");
|
|
217
|
public static final UUID uuidAluminium = UUID.fromString("5c6cdbf0-c7a9-4223-8bbb-d33d41e1b9d3");
|
|
218
|
public static final UUID uuidChemotaxonomy = UUID.fromString("53ff9430-0154-48a4-a2bb-99f183757c96");
|
|
219
|
public static final UUID uuidStorageProductsOfSeeds = UUID.fromString("5e569333-a5b6-42f9-bc5d-e010bdfef89c");
|
|
220
|
|
|
221
|
|
|
222
|
|
|
223
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|
|
224
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|
|
225
|
/* (non-Javadoc)
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226
|
* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getFeatureByKey(java.lang.String)
|
|
227
|
*/
|
|
228
|
@Override
|
|
229
|
public Feature getFeatureByKey(String key) throws UndefinedTransformerMethodException {
|
|
230
|
if (CdmUtils.isEmpty(key)){return null;
|
|
231
|
|
|
232
|
}else if (key.equalsIgnoreCase("ecology")){return Feature.ECOLOGY();
|
|
233
|
}else if (key.equalsIgnoreCase("uses")){return Feature.USES();
|
|
234
|
}else if (key.equalsIgnoreCase("anatomy")){return Feature.ANATOMY();
|
|
235
|
}else if (key.equalsIgnoreCase("description")){return Feature.DESCRIPTION();
|
|
236
|
}else if (key.equalsIgnoreCase("distribution")){return Feature.DISTRIBUTION();
|
|
237
|
}else if (key.equalsIgnoreCase("habitatecology")){return Feature.HABITAT_ECOLOGY();
|
|
238
|
|
|
239
|
}else if (key.equalsIgnoreCase("Vegetative Anatomy")){return Feature.ANATOMY();
|
|
240
|
|
|
241
|
}else{
|
|
242
|
return null;
|
|
243
|
}
|
|
244
|
}
|
|
245
|
|
|
246
|
/* (non-Javadoc)
|
|
247
|
* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getFeatureUuid(java.lang.String)
|
|
248
|
*/
|
|
249
|
@Override
|
|
250
|
public UUID getFeatureUuid(String key) throws UndefinedTransformerMethodException {
|
|
251
|
if (CdmUtils.isEmpty(key)){return null;
|
|
252
|
|
|
253
|
|
|
254
|
}else if (key.equalsIgnoreCase("cultivation")){return uuidCultivation;
|
|
255
|
}else if (key.equalsIgnoreCase("history")){return uuidHistory;
|
|
256
|
}else if (key.equalsIgnoreCase("phylogeny")){return uuidPhylogeny;
|
|
257
|
}else if (key.equalsIgnoreCase("Chromosomes")){return uuidChromosomes;
|
|
258
|
}else if (key.equalsIgnoreCase("Habitat")){return uuidHabitat;
|
|
259
|
}else if (key.equalsIgnoreCase("Habitat & Ecology")){return uuidHabitatEcology;
|
|
260
|
}else if (key.equalsIgnoreCase("Leaflets")){return uuidLeaflets;
|
|
261
|
}else if (key.equalsIgnoreCase("Leaves")){return uuidLeaves;
|
|
262
|
}else if (key.equalsIgnoreCase("Branchlets")){return uuidBranchlets;
|
|
263
|
}else if (key.equalsIgnoreCase("lifeform")){return uuidLifeform;
|
|
264
|
}else if (key.equalsIgnoreCase("habit")){return uuidLifeform;
|
|
265
|
}else if (key.equalsIgnoreCase("Inflorescences")){return uuidInflorescences;
|
|
266
|
}else if (key.equalsIgnoreCase("Flowers")){return uuidFlowers;
|
|
267
|
}else if (key.equalsIgnoreCase("Sepals")){return uuidSepals;
|
|
268
|
}else if (key.equalsIgnoreCase("Outer Sepals")){return uuidOuterSepals;
|
|
269
|
}else if (key.equalsIgnoreCase("Anthers")){return uuidAnthers;
|
|
270
|
}else if (key.equalsIgnoreCase("Petals")){return uuidPetals;
|
|
271
|
}else if (key.equalsIgnoreCase("Petal")){return uuidPetal;
|
|
272
|
}else if (key.equalsIgnoreCase("Disc")){return uuidDisc;
|
|
273
|
}else if (key.equalsIgnoreCase("Stamens")){return uuidStamens;
|
|
274
|
}else if (key.equalsIgnoreCase("Fruits")){return uuidFruits;
|
|
275
|
}else if (key.equalsIgnoreCase("Indumentum")){return uuidIndumentum;
|
|
276
|
}else if (key.equalsIgnoreCase("figure")){return uuidFigure;
|
|
277
|
}else if (key.equalsIgnoreCase("fig")){return uuidFigure;
|
|
278
|
}else if (key.equalsIgnoreCase("figs")){return uuidFigures;
|
|
279
|
}else if (key.equalsIgnoreCase("figures")){return uuidFigures;
|
|
280
|
}else if (key.equalsIgnoreCase("Seeds")){return uuidSeeds;
|
|
281
|
}else if (key.equalsIgnoreCase("Flowering")){return uuidFlowering;
|
|
282
|
}else if (key.equalsIgnoreCase("Bracts")){return uuidBracts;
|
|
283
|
}else if (key.equalsIgnoreCase("Pedicels")){return uuidPedicels;
|
|
284
|
}else if (key.equalsIgnoreCase("Pistil")){return uuidPistil;
|
|
285
|
}else if (key.equalsIgnoreCase("Ovary")){return uuidOvary;
|
|
286
|
}else if (key.equalsIgnoreCase("Twigs")){return uuidTwigs;
|
|
287
|
}else if (key.equalsIgnoreCase("Pedicels")){return uuidPedicels;
|
|
288
|
}else if (key.equalsIgnoreCase("Infructescences")){return uuidInfructescences;
|
|
289
|
}else if (key.equalsIgnoreCase("Branches")){return uuidBranches;
|
|
290
|
}else if (key.equalsIgnoreCase("Flower")){return uuidFlower;
|
|
291
|
}else if (key.equalsIgnoreCase("Ovules")){return uuidOvules;
|
|
292
|
}else if (key.equalsIgnoreCase("Female")){return uuidFemaleFlowers;
|
|
293
|
}else if (key.equalsIgnoreCase("Style")){return uuidStyle;
|
|
294
|
}else if (key.equalsIgnoreCase("Arillode")){return uuidArillode;
|
|
295
|
}else if (key.equalsIgnoreCase("Fruit")){return uuidFruit;
|
|
296
|
}else if (key.equalsIgnoreCase("Branch")){return uuidBranch;
|
|
297
|
}else if (key.equalsIgnoreCase("Inflorescence")){return uuidInflorescence;
|
|
298
|
}else if (key.equalsIgnoreCase("Male inflorescences")){return uuidMaleInflorescences;
|
|
299
|
}else if (key.equalsIgnoreCase("Female inflorescences")){return uuidFemaleInflorescences;
|
|
300
|
|
|
301
|
}else if (key.equalsIgnoreCase("Calyx")){return uuidCalyx;
|
|
302
|
}else if (key.equalsIgnoreCase("Seedling")){return uuidSeedling;
|
|
303
|
}else if (key.equalsIgnoreCase("Staminodes")){return uuidStaminodes;
|
|
304
|
}else if (key.equalsIgnoreCase("Filaments")){return uuidFilaments;
|
|
305
|
}else if (key.equalsIgnoreCase("Pistillode")){return uuidPistillode;
|
|
306
|
}else if (key.equalsIgnoreCase("Stigma")){return uuidStigma;
|
|
307
|
}else if (key.equalsIgnoreCase("Petiole")){return uuidPetiole;
|
|
308
|
}else if (key.equalsIgnoreCase("Buds")){return uuidBuds;
|
|
309
|
}else if (key.equalsIgnoreCase("Stems")){return uuidStems;
|
|
310
|
}else if (key.equalsIgnoreCase("Trees")){return uuidTrees;
|
|
311
|
}else if (key.equalsIgnoreCase("Axillary")){return uuidAxillary;
|
|
312
|
}else if (key.equalsIgnoreCase("Petiolules")){return uuidPetiolules;
|
|
313
|
}else if (key.equalsIgnoreCase("Male flowers")){return uuidMaleFlowers;
|
|
314
|
}else if (key.equalsIgnoreCase("Young inflorescences")){return uuidYoungInflorescences;
|
|
315
|
}else if (key.equalsIgnoreCase("Sepal")){return uuidSepal;
|
|
316
|
}else if (key.equalsIgnoreCase("Thyrses")){return uuidThyrses;
|
|
317
|
}else if (key.equalsIgnoreCase("Thyrsus")){return uuidThyrsus;
|
|
318
|
}else if (key.equalsIgnoreCase("Bark")){return uuidBark;
|
|
319
|
}else if (key.equalsIgnoreCase("endophytic body")){return uuidEndophyticBody;
|
|
320
|
}else if (key.equalsIgnoreCase("flowering buds")){return uuidFloweringBuds;
|
|
321
|
//TODO the same ?
|
|
322
|
}else if (key.equalsIgnoreCase("flower buds")){return uuidFloweringBuds;
|
|
323
|
}else if (key.equalsIgnoreCase("perianth")){return uuidPerianth;
|
|
324
|
}else if (key.equalsIgnoreCase("scales")){return uuidScales;
|
|
325
|
}else if (key.equalsIgnoreCase("perigone tube")){return uuidPerigoneTube;
|
|
326
|
}else if (key.equalsIgnoreCase("perigone")){return uuidPerigone;
|
|
327
|
}else if (key.equalsIgnoreCase("perigone lobes")){return uuidPerigoneLobes;
|
|
328
|
|
|
329
|
}else if (key.equalsIgnoreCase("corolla")){return uuidCorolla;
|
|
330
|
}else if (key.equalsIgnoreCase("annulus")){return uuidAnnulus;
|
|
331
|
}else if (key.equalsIgnoreCase("female flowers")){return uuidFemaleFlowers;
|
|
332
|
}else if (key.equalsIgnoreCase("cymes")){return uuidCymes;
|
|
333
|
}else if (key.equalsIgnoreCase("nutlets")){return uuidNutlets;
|
|
334
|
}else if (key.equalsIgnoreCase("stem")){return uuidStem;
|
|
335
|
}else if (key.equalsIgnoreCase("pollen")){return uuidPollen;
|
|
336
|
}else if (key.equalsIgnoreCase("secondary xylem")){return uuidSecondaryXylem;
|
|
337
|
}else if (key.equalsIgnoreCase("chromosome number")){return uuidChromosomeNumber;
|
|
338
|
}else if (key.equalsIgnoreCase("stem leaves")){return uuidStemLeaves;
|
|
339
|
}else if (key.equalsIgnoreCase("flower tube")){return uuidFlowerTube;
|
|
340
|
|
|
341
|
}else if (key.equalsIgnoreCase("seed")){return uuidSeed;
|
|
342
|
}else if (key.equalsIgnoreCase("drupes")){return uuidDrupes;
|
|
343
|
}else if (key.equalsIgnoreCase("fruiting axes")){return uuidFruitingAxes;
|
|
344
|
}else if (key.equalsIgnoreCase("androecium")){return uuidAndroecium;
|
|
345
|
}else if (key.equalsIgnoreCase("gynoecium")){return uuidGynoecium;
|
|
346
|
|
|
347
|
}else if (key.equalsIgnoreCase("anther")){return uuidAnther;
|
|
348
|
}else if (key.equalsIgnoreCase("wood")){return uuidWood;
|
|
349
|
}else if (key.equalsIgnoreCase("flower-bearing stems")){return uuidFlowerBearingStems;
|
|
350
|
}else if (key.equalsIgnoreCase("Flowering branchlets")){return uuidFloweringBranchlets;
|
|
351
|
|
|
352
|
}else if (key.equalsIgnoreCase("Pseudo-stipules")){return uuidPseudoStipules;
|
|
353
|
}else if (key.equalsIgnoreCase("Wall of fruit inside")){return uuidWallOfFruitInside;
|
|
354
|
|
|
355
|
|
|
356
|
}else if (key.equalsIgnoreCase("Note")){return uuidNote;
|
|
357
|
}else if (key.equalsIgnoreCase("Notes")){return uuidNotes;
|
|
358
|
}else if (key.equalsIgnoreCase("Taxonomy")){return uuidTaxonomy;
|
|
359
|
}else if (key.equalsIgnoreCase("Morphology")){return uuidMorphology;
|
|
360
|
}else if (key.equalsIgnoreCase("Palynology")){return uuidPalynology;
|
|
361
|
}else if (key.equalsIgnoreCase("Wood anatomy")){return uuidWoodAnatomy;
|
|
362
|
}else if (key.equalsIgnoreCase("Leaf anatomy")){return uuidLeafAnatomy;
|
|
363
|
}else if (key.equalsIgnoreCase("Chromosome numbers")){return uuidChromosomeNumbers;
|
|
364
|
}else if (key.equalsIgnoreCase("Phytochemistry and Chemotaxonomy")){return uuidPhytochemistryAndChemotaxonomy;
|
|
365
|
}else if (key.equalsIgnoreCase("phytochemo")){return uuidPhytochemistryAndChemotaxonomy;
|
|
366
|
}else if (key.equalsIgnoreCase("Pollen morphology")){return uuidPollenMorphology;
|
|
367
|
}else if (key.equalsIgnoreCase("Vegetative morphology and anatomy")){return uuidVegetativeMorphologyAndAnatomy;
|
|
368
|
}else if (key.equalsIgnoreCase("Flower morphology")){return uuidFlowerMorphology;
|
|
369
|
}else if (key.equalsIgnoreCase("Pollination")){return uuidPollination;
|
|
370
|
}else if (key.equalsIgnoreCase("Life cycle")){return uuidLifeCycle;
|
|
371
|
}else if (key.equalsIgnoreCase("lifehistory")){return uuidLifeCycle;
|
|
372
|
}else if (key.equalsIgnoreCase("Fruits and embryology")){return uuidFruitsAndEmbryology;
|
|
373
|
}else if (key.equalsIgnoreCase("Dispersal")){return uuidDispersal;
|
|
374
|
}else if (key.equalsIgnoreCase("Phytochemistry")){return uuidPhytochemistry;
|
|
375
|
}else if (key.equalsIgnoreCase("Fossils")){return uuidFossils;
|
|
376
|
}else if (key.equalsIgnoreCase("Morphology and anatomy")){return uuidMorphologyAndAnatomy;
|
|
377
|
}else if (key.equalsIgnoreCase("embryology")){return uuidEmbryology;
|
|
378
|
}else if (key.equalsIgnoreCase("cytology")){return uuidCytology;
|
|
379
|
|
|
380
|
}else if (key.equalsIgnoreCase("Leaf phenolics")){return uuidLeafPhenolics;
|
|
381
|
}else if (key.equalsIgnoreCase("Alkaloids")){return uuidAlkaloids;
|
|
382
|
}else if (key.equalsIgnoreCase("Iridoid glucosides")){return uuidIridoidGlucosides;
|
|
383
|
}else if (key.equalsIgnoreCase("Aluminium")){return uuidAluminium;
|
|
384
|
}else if (key.equalsIgnoreCase("Chemotaxonomy")){return uuidChemotaxonomy;
|
|
385
|
}else if (key.equalsIgnoreCase("Storage products of seeds")){return uuidStorageProductsOfSeeds;
|
|
386
|
|
|
387
|
|
|
388
|
|
|
389
|
// }else if (key.equalsIgnoreCase("Inflorescence")){return uuidInflorescence;
|
|
390
|
|
|
391
|
|
|
392
|
|
|
393
|
}else{
|
|
394
|
return null;
|
|
395
|
}
|
|
396
|
|
|
397
|
}
|
|
398
|
|
|
399
|
|
|
400
|
|
|
401
|
/* (non-Javadoc)
|
|
402
|
* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getMarkerTypeByKey(java.lang.String)
|
|
403
|
*/
|
|
404
|
@Override
|
|
405
|
public MarkerType getMarkerTypeByKey(String key) throws UndefinedTransformerMethodException {
|
|
406
|
if (CdmUtils.isEmpty(key)){return null;
|
|
407
|
// }else if (key.equalsIgnoreCase("distribution")){return MarkerType.;
|
|
408
|
// }else if (key.equalsIgnoreCase("habitatecology")){return Feature.ECOLOGY();
|
|
409
|
}else{
|
|
410
|
return null;
|
|
411
|
}
|
|
412
|
}
|
|
413
|
|
|
414
|
@Override
|
|
415
|
public UUID getMarkerTypeUuid(String key) throws UndefinedTransformerMethodException {
|
|
416
|
if (CdmUtils.isEmpty(key)){return null;
|
|
417
|
}else if (key.equalsIgnoreCase("INCOMPLETELY KNOWN SPECIES")){return uuidIncompleteTaxon;
|
|
418
|
}else if (key.equalsIgnoreCase("INSUFICIENTLY KNOWN")){return uuidIncompleteTaxon;
|
|
419
|
}else if (key.equalsIgnoreCase("INSUFFICIENTLY KNOWN")){return uuidIncompleteTaxon;
|
|
420
|
}else if (key.equalsIgnoreCase("IMPERFECTLY KNOWN SPECIES")){return uuidIncompleteTaxon;
|
|
421
|
}else{
|
|
422
|
return null;
|
|
423
|
}
|
|
424
|
|
|
425
|
}
|
|
426
|
|
|
427
|
|
|
428
|
|
|
429
|
@Override
|
|
430
|
public NamedAreaLevel getNamedAreaLevelByKey(String key )throws UndefinedTransformerMethodException {
|
|
431
|
if (CdmUtils.isEmpty(key)){return null;
|
|
432
|
}else if (key.equalsIgnoreCase("country")){return NamedAreaLevel.COUNTRY();
|
|
433
|
}else if (key.equalsIgnoreCase("province")){return NamedAreaLevel.PROVINCE();
|
|
434
|
}else if (key.equalsIgnoreCase("town")){return NamedAreaLevel.TOWN();
|
|
435
|
}else if (key.equalsIgnoreCase("state")){return NamedAreaLevel.STATE();
|
|
436
|
}else if (key.equalsIgnoreCase("tdwg1")){return NamedAreaLevel.TDWG_LEVEL1();
|
|
437
|
}else if (key.equalsIgnoreCase("tdwg2")){return NamedAreaLevel.TDWG_LEVEL2();
|
|
438
|
}else if (key.equalsIgnoreCase("tdwg3")){return NamedAreaLevel.TDWG_LEVEL3();
|
|
439
|
}else if (key.equalsIgnoreCase("tdwg4")){return NamedAreaLevel.TDWG_LEVEL4();
|
|
440
|
}else{
|
|
441
|
return null;
|
|
442
|
}
|
|
443
|
}
|
|
444
|
|
|
445
|
/* (non-Javadoc)
|
|
446
|
* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getNamedAreaLevelUuid(java.lang.String)
|
|
447
|
*/
|
|
448
|
@Override
|
|
449
|
public UUID getNamedAreaLevelUuid(String key) throws UndefinedTransformerMethodException {
|
|
450
|
if (CdmUtils.isEmpty(key)){return null;
|
|
451
|
}else if (key.equalsIgnoreCase("region")){return uuidRegion;
|
|
452
|
}else if (key.equalsIgnoreCase("continental region")){return uuidContinentalRegion;
|
|
453
|
}else if (key.equalsIgnoreCase("world")){return uuidWorld;
|
|
454
|
}else if (key.equalsIgnoreCase("county")){return uuidCounty;
|
|
455
|
}else if (key.equalsIgnoreCase("continent")){return uuidContinent;
|
|
456
|
}else if (key.equalsIgnoreCase("district")){return uuidDistrict;
|
|
457
|
}else if (key.equalsIgnoreCase("locality")){return uuidLocality;
|
|
458
|
}else if (key.equalsIgnoreCase("other")){return uuidLevelOther;
|
|
459
|
}else{
|
|
460
|
return null;
|
|
461
|
}
|
|
462
|
}
|
|
463
|
|
|
464
|
|
|
465
|
|
|
466
|
/* (non-Javadoc)
|
|
467
|
* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getNamedAreaByKey(java.lang.String)
|
|
468
|
*/
|
|
469
|
@Override
|
|
470
|
public NamedArea getNamedAreaByKey(String key) throws UndefinedTransformerMethodException {
|
|
471
|
if (CdmUtils.isEmpty(key)){return null;
|
|
472
|
}else if (key.equalsIgnoreCase("Kalimantan")){return TdwgArea.getAreaByTdwgAbbreviation("BOR-KA");
|
|
473
|
}else if (key.equalsIgnoreCase("Borneo")){return TdwgArea.getAreaByTdwgAbbreviation("BOR");
|
|
474
|
}else if (key.equalsIgnoreCase("Peninsular Malaysia")){return TdwgArea.getAreaByTdwgAbbreviation("MLY-PM");
|
|
475
|
}else if (key.equalsIgnoreCase("Malay Peninsula")){return TdwgArea.getAreaByTdwgAbbreviation("MLY-PM");
|
|
476
|
}else if (key.equalsIgnoreCase("Java")){return TdwgArea.getAreaByTdwgAbbreviation("JAW-OO");
|
|
477
|
}else if (key.equalsIgnoreCase("Bismarck Archipelago")){return TdwgArea.getAreaByTdwgAbbreviation("BIS-OO");
|
|
478
|
}else if (key.equalsIgnoreCase("Sumatra")){return TdwgArea.getAreaByTdwgAbbreviation("SUM-OO");
|
|
479
|
}else if (key.equalsIgnoreCase("Sabah")){return TdwgArea.getAreaByTdwgAbbreviation("BOR-SB");
|
|
480
|
}else if (key.equalsIgnoreCase("North Borneo")){return TdwgArea.getAreaByTdwgAbbreviation("BOR-SB");
|
|
481
|
|
|
482
|
}else if (key.equalsIgnoreCase("Bali")){return TdwgArea.getAreaByTdwgAbbreviation("LSI-BA");
|
|
483
|
}else if (key.equalsIgnoreCase("Moluccas")){return TdwgArea.getAreaByTdwgAbbreviation("MOL-OO");
|
|
484
|
|
|
485
|
}else if (key.equalsIgnoreCase("Indochina")){return TdwgArea.getAreaByTdwgAbbreviation("41");
|
|
486
|
}else if (key.equalsIgnoreCase("Lesser Sunda Islands")){return TdwgArea.getAreaByTdwgAbbreviation("LSI");
|
|
487
|
}else if (key.equalsIgnoreCase("Sulawesi")){return TdwgArea.getAreaByTdwgAbbreviation("SUL-OO");
|
|
488
|
}else if (key.equalsIgnoreCase("Celebes")){return TdwgArea.getAreaByTdwgAbbreviation("SUL-OO");
|
|
489
|
|
|
490
|
}else if (key.equalsIgnoreCase("south-east United States")){return TdwgArea.getAreaByTdwgAbbreviation("78");
|
|
491
|
}else if (key.equalsIgnoreCase("West Indies")){return TdwgArea.getAreaByTdwgAbbreviation("81");
|
|
492
|
|
|
493
|
}else{
|
|
494
|
return null;
|
|
495
|
}
|
|
496
|
|
|
497
|
}
|
|
498
|
|
|
499
|
/* (non-Javadoc)
|
|
500
|
* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getNamedAreaUuid(java.lang.String)
|
|
501
|
*/
|
|
502
|
@Override
|
|
503
|
public UUID getNamedAreaUuid(String key) throws UndefinedTransformerMethodException {
|
|
504
|
if (CdmUtils.isEmpty(key)){return null;
|
|
505
|
}else if (key.equalsIgnoreCase("Kalimantan")){return uuidKalimantan;
|
|
506
|
}else if (key.equalsIgnoreCase("Borneo")){return uuidBorneo;
|
|
507
|
}else if (key.equalsIgnoreCase("Moluccas")){return uuidMoluccas;
|
|
508
|
}else if (key.equalsIgnoreCase("Peninsular Malaysia")){return uuidPeninsularMalaysia;
|
|
509
|
}else if (key.equalsIgnoreCase("Java")){return uuidJava;
|
|
510
|
}else if (key.equalsIgnoreCase("Bismarck Archipelago")){return uuidBismarckArchipelago;
|
|
511
|
// }else if (key.equalsIgnoreCase("New Ireland")){return uuidNewIreland;
|
|
512
|
// }else if (key.equalsIgnoreCase("Celebes")){return uuidSulawesi;
|
|
513
|
}else if (key.equalsIgnoreCase("Sumatra")){return uuidSumatra;
|
|
514
|
|
|
515
|
// }else if (key.equalsIgnoreCase("Bangka")){return uuidBangka;
|
|
516
|
}else if (key.equalsIgnoreCase("Sabah")){return uuidSabah;
|
|
517
|
}else if (key.equalsIgnoreCase("Bali")){return uuidBali;
|
|
518
|
|
|
519
|
//
|
|
520
|
//Celebes (Sulawesi)
|
|
521
|
//Moluccas (Ceram, Halmahera, Ambon)
|
|
522
|
//Peninsular Malaysia (Kedah, Perak, Kelantan, Trengganu, Pahang, Selangor, Negri Sembilan, Malacca, Johore)
|
|
523
|
//Borneo (Sabah, Sarawak, Kalimantan)
|
|
524
|
//Sumatra (Aceh, Sumatera Barat, Sumatera Utara)
|
|
525
|
//Lesser Sunda Islands (Bali, Lombok, Flores, Timor)
|
|
526
|
|
|
527
|
|
|
528
|
//countries
|
|
529
|
}else if (key.equalsIgnoreCase("Philippines")){return uuidPhilippines;
|
|
530
|
|
|
531
|
|
|
532
|
|
|
533
|
}else{
|
|
534
|
return null;
|
|
535
|
}
|
|
536
|
}
|
|
537
|
|
|
538
|
/* (non-Javadoc)
|
|
539
|
* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getPresenceTermByKey(java.lang.String)
|
|
540
|
*/
|
|
541
|
@Override
|
|
542
|
public PresenceTerm getPresenceTermByKey(String key) throws UndefinedTransformerMethodException {
|
|
543
|
if (CdmUtils.isEmpty(key)){return null;
|
|
544
|
}else if (key.equalsIgnoreCase("endemic")){return PresenceTerm.ENDEMIC_FOR_THE_RELEVANT_AREA();
|
|
545
|
}else if (key.equalsIgnoreCase("cultivated")){return PresenceTerm.CULTIVATED();
|
|
546
|
}else{
|
|
547
|
return null;
|
|
548
|
}
|
|
549
|
}
|
|
550
|
|
|
551
|
/* (non-Javadoc)
|
|
552
|
* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getPresenceTermUuid(java.lang.String)
|
|
553
|
*/
|
|
554
|
@Override
|
|
555
|
public UUID getPresenceTermUuid(String key) throws UndefinedTransformerMethodException {
|
|
556
|
if (CdmUtils.isEmpty(key)){return null;
|
|
557
|
// }else if (key.equalsIgnoreCase("region")){return uuidRegion;
|
|
558
|
}else{
|
|
559
|
return null;
|
|
560
|
}
|
|
561
|
}
|
|
562
|
|
|
563
|
|
|
564
|
|
|
565
|
|
|
566
|
}
|