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/**
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* Copyright (C) 2009 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.remote.controller.dto;
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import io.swagger.annotations.Api;
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import java.io.IOException;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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import java.util.UUID;
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import javax.servlet.http.HttpServletRequest;
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import javax.servlet.http.HttpServletResponse;
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import org.apache.log4j.Logger;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.stereotype.Controller;
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import org.springframework.web.bind.annotation.PathVariable;
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import org.springframework.web.bind.annotation.RequestMapping;
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import org.springframework.web.bind.annotation.RequestMethod;
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import org.springframework.web.bind.annotation.RequestParam;
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import org.springframework.web.servlet.ModelAndView;
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import eu.etaxonomy.cdm.api.service.IPolytomousKeyService;
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import eu.etaxonomy.cdm.api.service.ITaxonService;
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import eu.etaxonomy.cdm.api.service.pager.Pager;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.LanguageString;
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import eu.etaxonomy.cdm.model.common.MultilanguageTextHelper;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.KeyStatement;
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import eu.etaxonomy.cdm.model.description.PolytomousKey;
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import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.remote.controller.AbstractController;
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import eu.etaxonomy.cdm.remote.controller.util.PagerParameters;
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import eu.etaxonomy.cdm.remote.dto.polytomouskey.AbstractLinkDto;
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import eu.etaxonomy.cdm.remote.dto.polytomouskey.LinkedPolytomousKeyNodeRowDto;
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import eu.etaxonomy.cdm.remote.dto.polytomouskey.PolytomousKeyNodeLinkDto;
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import eu.etaxonomy.cdm.remote.dto.polytomouskey.TaxonLinkDto;
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import eu.etaxonomy.cdm.remote.l10n.LocaleContext;
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/**
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* @author l.morris
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* @since Feb 21, 2013
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*
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*/
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@Controller
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@Api("polytomousKeyDTO")
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@RequestMapping(value = {"/dto/polytomousKey/"})
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public class PolytomousKeyNodeDtoController extends AbstractController<PolytomousKey, IPolytomousKeyService> {
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public static final Logger logger = Logger
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.getLogger(PolytomousKeyNodeDtoController.class);
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private static final List<String> KEY_INIT_STRATEGY = Arrays.asList(new String[]{
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"root.children"
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});
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private static final List<String> NODE_INIT_STRATEGY = Arrays.asList(new String[]{
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"*",
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"question.label",
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"statement.label",
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"taxon.name.$"
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});
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public PolytomousKeyNodeDtoController() {
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super();
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setInitializationStrategy(NODE_INIT_STRATEGY);
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}
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private ITaxonService taxonService;
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.remote.controller.AbstractController#setService(eu.etaxonomy.cdm.api.service.IService)
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*/
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@Override
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@Autowired
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public void setService(IPolytomousKeyService service) {
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this.service = service;
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}
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@Autowired
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public void setService(ITaxonService taxonService) {
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this.taxonService = taxonService;
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}
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@RequestMapping(value = {"{uuid}/linkedStyle"}, method = RequestMethod.GET)
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public ModelAndView doLinkedStyle(
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@PathVariable("uuid") UUID uuid,
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HttpServletRequest request,
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HttpServletResponse response) throws IOException {
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logger.info("doLinkedStyle() - " + requestPathAndQuery(request));
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ModelAndView mv = new ModelAndView();
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List<LinkedPolytomousKeyNodeRowDto> polytomousKeyNodeRowList = new ArrayList<LinkedPolytomousKeyNodeRowDto>();
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List<String> nodePaths = new ArrayList<String>();
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nodePaths.add("$");//initialize all to 1 relations e.g. subkey, statement
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nodePaths.add("statement.$");
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//nodePaths.add("taxon.name.nomenclaturalReference");
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nodePaths.add("taxon.name.$");
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List<String> propertyPaths = new ArrayList<String>();
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propertyPaths.add("sources");
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propertyPaths.add("annotations");
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//PolytomousKeyListController - don't want a pager and how do we use property paths.
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//create ticket for portal implementation of key stuff so appears in roadmap.
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//TaxonBase taxon = taxonService.find(taxonUuid);
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//Pager<PolytomousKey> pager = service.findByTaxonomicScope(taxon, pagerParameters.getPageSize(), pagerParameters.getPageIndex(), null);
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//PolytomousKey key = service.findByTaxonomicScope(taxon, DEFAULT_PAGE_SIZE, DEFAULT_PAGE_SIZE, initializationStrategy);
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//request mapping /dto/polytomousKey/{uuid}/linkedStyle
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PolytomousKey key = service.loadWithNodes(uuid, propertyPaths, nodePaths);
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PolytomousKeyNode keyNode = key.getRoot();
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processPolytomousKeyNode(keyNode, polytomousKeyNodeRowList);
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logger.info("size of polytomousKeyNodeRowList - " + polytomousKeyNodeRowList.size());
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//return a List of LinkedPolytomousKeyNodeRowDto
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mv.addObject(polytomousKeyNodeRowList);
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return mv;
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}
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@RequestMapping(value = {"linkedStyle"}, method = RequestMethod.GET)
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public ModelAndView doLinkedStyleByTaxonomicScope(
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@RequestParam(value = "findByTaxonomicScope") UUID taxonUuid,
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@RequestParam(value = "pageNumber", required = false) Integer pageNumber,
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@RequestParam(value = "pageSize", required = false) Integer pageSize,
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HttpServletRequest request,
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HttpServletResponse response) throws IOException {
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logger.info("doLinkedStyle() - " + requestPathAndQuery(request));
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ModelAndView mv = new ModelAndView();
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List<LinkedPolytomousKeyNodeRowDto> polytomousKeyNodeRowList = new ArrayList<LinkedPolytomousKeyNodeRowDto>();
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List<String> nodePaths = new ArrayList<String>();
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nodePaths.add("$");//initialize all to 1 relations e.g. subkey, statement
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nodePaths.add("statement.$");
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//nodePaths.add("taxon.name.nomenclaturalReference");
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nodePaths.add("taxon.name.$");
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List<String> propertyPaths = new ArrayList<String>();
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propertyPaths.add("sources");
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propertyPaths.add("annotations");
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//PolytomousKeyListController - don't want a pager and how do we use property paths.
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//create ticket for portal implementation of key stuff so appears in roadmap.
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TaxonBase taxon = taxonService.find(taxonUuid);
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//TaxonBase taxon = taxonService.find(taxonUuid);
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logger.error("The taxon uuid " + taxonUuid + " and taxon is " + taxon);
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//Pager<PolytomousKey> pager = service.findByTaxonomicScope(taxon, pagerParameters.getPageSize(), pagerParameters.getPageIndex(), null);
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//not getting a result when I use the method findByTaxonomicScope. Maybe I'm giving it the wrong taxonUUID. Ask andreas for a taxon that works
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PagerParameters pagerParameters = new PagerParameters(pageSize, pageNumber);
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pagerParameters.normalizeAndValidate(response);
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Pager<PolytomousKey> pager = service.findByTaxonomicScope(taxon, pagerParameters.getPageSize(), pagerParameters.getPageIndex(), initializationStrategy, NODE_INIT_STRATEGY);
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List<PolytomousKey> keyList = pager.getRecords(); // a pager is returned containing 1 key but pager.getRecords is empty
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for(PolytomousKey key : keyList) {
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//request mapping /dto/polytomousKey/{uuid}/linkedStyle
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//PolytomousKey key = service.loadWithNodes(uuid, propertyPaths, nodePaths);
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PolytomousKeyNode keyNode = key.getRoot();
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processPolytomousKeyNode(keyNode, polytomousKeyNodeRowList);
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logger.info("size of polytomousKeyNodeRowList - " + polytomousKeyNodeRowList.size());
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logger.error("The key is " + key.getTitleCache());//TODO: Need to add this to the mv
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//return a List of LinkedPolytomousKeyNodeRowDto
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Map<String, Object> modelMap = new HashMap<String, Object>();
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modelMap.put("titleCache", key.getTitleCache());
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modelMap.put("records", polytomousKeyNodeRowList);
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//mv.addObject(polytomousKeyNodeRowList);
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//mv contains the list of LinkedPolytomousKeyNodeRowDto objects and the titleCache of the key.
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mv.addObject(modelMap);
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//mv.addAllObjects(modelMap);
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}
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return mv;
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}
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/**
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* @param keyNode
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*/
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private void processPolytomousKeyNode(PolytomousKeyNode keyNode, List<LinkedPolytomousKeyNodeRowDto> polytomousKeyNodeRowList) {
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KeyStatement rowQuestion = null;
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Integer nodeNumber = null;
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Integer edgeNumber = null;
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Feature rowFeature = null;
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KeyStatement childStatement = null;
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int childIndex = 1;
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// Get edges of the current node.
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for(PolytomousKeyNode childKeyNode : keyNode.getChildren()){
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List<AbstractLinkDto> links = new ArrayList<AbstractLinkDto>();
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childStatement = childKeyNode.getStatement(); //is this the correct statement
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Taxon taxon = childKeyNode.getTaxon();
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UUID taxonUuid = (taxon == null) ? null : taxon.getUuid();
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// Skip node with empty statements (see below for explanation: "Special Case")
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if (childStatement == null && taxonUuid != null) {
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logger.info("Continuing - nodeNumber " + keyNode.getNodeNumber() + "Child nodeNumber " + childKeyNode.getNodeNumber());
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continue;
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}
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/*
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* Special case: Child nodes with empty statements but taxa as leaf are to treated as if
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* all those taxa where direct children of the source node.
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*/
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List<PolytomousKeyNode> children = childKeyNode.getChildren();
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boolean islinkToManyTaxa = false;
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if (children != null && children.size() > 0) {
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Taxon childTaxon = children.get(0).getTaxon();
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if (childTaxon != null) {
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islinkToManyTaxa = children.get(0).getStatement() != null && childTaxon.getUuid() == null;
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//logger.info("islinkToManyTaxa " + islinkToManyTaxa + " node number " + keyNode.getNodeNumber());
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}
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}
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boolean islinkToTaxon = (taxonUuid == null) ? false : true;
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boolean islinkToSubKey = false;
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if (childKeyNode.getSubkey() != null)
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{
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islinkToSubKey = (childKeyNode.getSubkey().getUuid() == null) ? false : true;
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}
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boolean islinkToOtherNode = (childKeyNode.getOtherNode() == null) ? false : true;
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boolean islinkToNode = ((childKeyNode.getNodeNumber() != null) && !islinkToManyTaxa && !islinkToOtherNode) ? true : false;
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AbstractLinkDto link;
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// a PolytomousKeyNode can either link to Taxa or to Nodes
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if (islinkToManyTaxa || islinkToTaxon) {
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if (islinkToManyTaxa) {
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for(PolytomousKeyNode child : childKeyNode.getChildren()){
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logger.info("islinkToManyTaxa " + islinkToManyTaxa + " node number " + keyNode.getNodeNumber());
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link = new TaxonLinkDto(child.getTaxon().getName());
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link.setUuid(taxonUuid);
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links.add(link);
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}
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} else {
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if (islinkToTaxon) {
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logger.info("islinkToTaxon " + islinkToTaxon + " node number " + keyNode.getNodeNumber());
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link = new TaxonLinkDto(childKeyNode.getTaxon().getName());
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link.setUuid(childKeyNode.getTaxon().getUuid());
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links.add(link);
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}
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}
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} else {
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if (islinkToNode) {
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logger.info("islinkToNode " + islinkToNode + " node number " + keyNode.getNodeNumber());
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link = new PolytomousKeyNodeLinkDto(childKeyNode.getNodeNumber());
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link.setUuid(childKeyNode.getUuid());
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links.add(link);
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}
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if (islinkToOtherNode) {
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logger.info("islinkToOtherNode " + islinkToOtherNode + " node number " + keyNode.getNodeNumber());
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link = new PolytomousKeyNodeLinkDto(childKeyNode.getOtherNode().getNodeNumber());
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link.setUuid(childKeyNode.getOtherNode().getUuid());
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links.add(link);
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}
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}
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/*if (islinkToManyTaxa) {
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for(PolytomousKeyNode child : childKeyNode.getChildren()){
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logger.info("islinkToManyTaxa " + islinkToManyTaxa + " node number " + keyNode.getNodeNumber());
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link = new TaxonLinkDto(child.getTaxon().getName());
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link.setUuid(taxonUuid);
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links.add(link);
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}
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} else {
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if (islinkToTaxon) {
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logger.info("islinkToTaxon " + islinkToTaxon + " node number " + keyNode.getNodeNumber());
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link = new TaxonLinkDto(childKeyNode.getTaxon().getName());
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link.setUuid(childKeyNode.getTaxon().getUuid());
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links.add(link);
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}
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}*/
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//TODO: isLinkToSubkey
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boolean hasQuestion = false;
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if (keyNode.getQuestion() != null)
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{
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hasQuestion = (keyNode.getQuestion().getLabel() == null) ? false : true;
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}
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rowQuestion = keyNode.getQuestion();
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logger.info("rowQuestion " + rowQuestion + " node number " + keyNode.getNodeNumber());
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boolean hasFeature = (keyNode.getFeature() == null) ? false : true;
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rowFeature = keyNode.getFeature();
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logger.info("rowFeature " + rowFeature + " node number " + keyNode.getNodeNumber());
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if (childStatement != null) {
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logger.info("childStatement " + childStatement.getLabel() + " node number " + keyNode.getNodeNumber());
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}
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nodeNumber = keyNode.getNodeNumber();
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//set the parameters in the LinkedPolytomousKeyodeRowDto and add it to the list
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LinkedPolytomousKeyNodeRowDto keyRow = new LinkedPolytomousKeyNodeRowDto();
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keyRow.setKeyNodeUuid(keyNode.getUuid());
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keyRow.setEdgeNumber(new Integer(childIndex));
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List<Language> languages = LocaleContext.getLanguages();
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//if(Hibernate.isInitialized(childStatement.getLabel())){
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if (childStatement != null) {
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LanguageString label = MultilanguageTextHelper.getPreferredLanguageString(childStatement.getLabel(), languages);
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keyRow.setChildStatement(label.getText());
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}
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keyRow.setRowFeature(rowFeature);
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keyRow.setRowQuestion(rowQuestion);
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keyRow.setNodeNumber(nodeNumber);
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//set links
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keyRow.setLinks(links);
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polytomousKeyNodeRowList.add(keyRow);
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childIndex++;
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}
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//edgeNumber = new Integer(childIndex);
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//set the parameters in the LinkedPolytomousKeyodeRowDto and add it to the list
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/*LinkedPolytomousKeyNodeRowDto keyRow = new LinkedPolytomousKeyNodeRowDto();
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keyRow.setKey(keyNode);
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keyRow.setEdgeNumber(edgeNumber);
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keyRow.setChildStatement(childStatement);
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keyRow.setRowFeature(rowFeature);
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keyRow.setRowQuestion(rowQuestion);
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keyRow.setNodeNumber(nodeNumber);//isLinkToManyTaxa
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//set links
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keyRow.setLinks(links);*/
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// Recurse into child nodes.
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for(PolytomousKeyNode childKeyNode : keyNode.getChildren()) {
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processPolytomousKeyNode(childKeyNode, polytomousKeyNodeRowList);
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}
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}
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}
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