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Revision 77b3215e

Added by Andreas Müller over 8 years ago

add update script and JAXB annotation for sequence positions #4743

View differences:

cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/SingleReadAlignment.java
31 31 
	"singleRead",
32 32 
	"shifts",
33 33 
	"editedSequence",
34 
	"reverseComplement"
34 
	"reverseComplement",
35 
	"firstSeqPosition",
36 
	"leftCutPosition",
37 
	"rightCutPosition"
35 38 
})
36 39 
@XmlRootElement(name = "SingleReadAlignment")
37 40 
@Entity
......
59 62 
	@Type(type="shiftUserType")
60 63 
    private Shift[] shifts = new Shift[0];
61 64 

  		




  62
  
  
    

  		




  63
  65
  
    
	private Integer firstSeqPosition;


  		




  64
  66
  
    

  		




  65
  67
  
    
	private Integer leftCutPosition;


  		












  

    
      cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v35_36/SchemaUpdater_35_36.java
    
  





  89
  89
  
    
        step = UniqueIndexDropper.NewInstance(tableName, oldColumnName, ! INCLUDE_AUDIT);


  		




  90
  90
  
    
        stepList.add(step);


  		




  91
  91
  
    

  		




  
  92
  
    
        //SingleReadAlignment firstSeqPosition


  		




  
  93
  
    
        stepName = "Add firstSeqPosition";


  		




  
  94
  
    
        tableName = "SingleReadAlignment";


  		




  
  95
  
    
        newColumnName = "firstSeqPosition";


  		




  
  96
  
    
        Integer defaultValue = null;


  		




  
  97
  
    
        boolean notNull = false;


  		




  
  98
  
    
        step = ColumnAdder.NewIntegerInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT, defaultValue, notNull);


  		




  
  99
  
    

  		




  
  100
  
    
        //SingleReadAlignment leftCutPosition


  		




  
  101
  
    
        stepName = "Add firstSeqPosition";


  		




  
  102
  
    
        tableName = "SingleReadAlignment";


  		




  
  103
  
    
        newColumnName = "leftCutPosition";


  		




  
  104
  
    
        step = ColumnAdder.NewIntegerInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT, defaultValue, notNull);


  		




  
  105
  
    

  		




  
  106
  
    

  		




  
  107
  
    
        //SingleReadAlignment leftCutPosition


  		




  
  108
  
    
        stepName = "Add firstSeqPosition";


  		




  
  109
  
    
        tableName = "SingleReadAlignment";


  		




  
  110
  
    
        newColumnName = "rightCutPosition";


  		




  
  111
  
    
        step = ColumnAdder.NewIntegerInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT, defaultValue, notNull);


  		




  
  112
  
    

  		




  92
  113
  
    

  		




  93
  114
  
    
		return stepList;


  		




  94
  115
  
    
	}


  		












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