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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.persistence.dao.hibernate.term;
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import java.net.URI;
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import java.util.ArrayList;
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import java.util.Collection;
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import java.util.Enumeration;
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import java.util.Iterator;
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import java.util.List;
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import java.util.Locale;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import org.hibernate.Criteria;
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import org.hibernate.Query;
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import org.hibernate.Session;
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import org.hibernate.criterion.Criterion;
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import org.hibernate.criterion.Projections;
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import org.hibernate.criterion.Restrictions;
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import org.hibernate.envers.query.AuditEntity;
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import org.hibernate.envers.query.AuditQuery;
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import org.springframework.stereotype.Repository;
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import eu.etaxonomy.cdm.model.common.AnnotationType;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.common.ExtensionType;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.MarkerType;
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import eu.etaxonomy.cdm.model.description.MeasurementUnit;
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import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
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import eu.etaxonomy.cdm.model.description.State;
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import eu.etaxonomy.cdm.model.description.StatisticalMeasure;
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import eu.etaxonomy.cdm.model.description.TextFormat;
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import eu.etaxonomy.cdm.model.location.Country;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.location.NamedAreaLevel;
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import eu.etaxonomy.cdm.model.location.NamedAreaType;
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import eu.etaxonomy.cdm.model.location.ReferenceSystem;
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import eu.etaxonomy.cdm.model.media.Media;
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import eu.etaxonomy.cdm.model.media.RightsType;
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import eu.etaxonomy.cdm.model.name.HybridRelationshipType;
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import eu.etaxonomy.cdm.model.name.NameRelationshipType;
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import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.occurrence.DerivationEventType;
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import eu.etaxonomy.cdm.model.taxon.SynonymType;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
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import eu.etaxonomy.cdm.model.term.DefinedTerm;
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import eu.etaxonomy.cdm.model.term.DefinedTermBase;
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import eu.etaxonomy.cdm.model.term.TermType;
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import eu.etaxonomy.cdm.model.term.TermVocabulary;
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import eu.etaxonomy.cdm.model.view.AuditEvent;
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import eu.etaxonomy.cdm.persistence.dao.hibernate.common.IdentifiableDaoBase;
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import eu.etaxonomy.cdm.persistence.dao.term.IDefinedTermDao;
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import eu.etaxonomy.cdm.persistence.dto.TermDto;
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import eu.etaxonomy.cdm.persistence.query.MatchMode;
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import eu.etaxonomy.cdm.persistence.query.OrderHint;
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/**
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* @author a.kohlbecker
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* @since 29.05.2008
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* @version 1.0
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*/
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@Repository
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public class DefinedTermDaoImpl extends IdentifiableDaoBase<DefinedTermBase> implements IDefinedTermDao{
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private static final Logger logger = Logger.getLogger(DefinedTermDaoImpl.class);
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public DefinedTermDaoImpl() {
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super(DefinedTermBase.class);
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indexedClasses = new Class[25];
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indexedClasses[0] = Rank.class;
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indexedClasses[1] = AnnotationType.class;
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indexedClasses[2] = ExtensionType.class;
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indexedClasses[3] = Language.class;
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indexedClasses[4] = MarkerType.class;
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indexedClasses[5] = MeasurementUnit.class;
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indexedClasses[6] = DefinedTerm.class;
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indexedClasses[7] = PresenceAbsenceTerm.class;
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indexedClasses[8] = State.class;
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indexedClasses[9] = StatisticalMeasure.class;
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indexedClasses[10] = TextFormat.class;
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indexedClasses[11] = DerivationEventType.class;
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indexedClasses[12] = NamedArea.class;
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indexedClasses[13] = NamedAreaLevel.class;
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indexedClasses[14] = NamedAreaType.class;
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indexedClasses[15] = ReferenceSystem.class;
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indexedClasses[16] = Country.class;
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indexedClasses[17] = RightsType.class;
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indexedClasses[18] = HybridRelationshipType.class;
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indexedClasses[19] = NameRelationshipType.class;
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indexedClasses[20] = NameTypeDesignationStatus.class;
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indexedClasses[21] = NomenclaturalStatusType.class;
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indexedClasses[22] = SpecimenTypeDesignationStatus.class;
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indexedClasses[23] = SynonymType.class;
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indexedClasses[24] = TaxonRelationshipType.class;
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}
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/**
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* Searches by Label
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* @see eu.etaxonomy.cdm.persistence.dao.common.ITitledDao#findByTitle(java.lang.String)
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*/
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@Override
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public List<DefinedTermBase> findByTitle(String queryString) {
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return findByTitle(queryString, null);
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}
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/**
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* Searches by Label
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* @see eu.etaxonomy.cdm.persistence.dao.common.ITitledDao#findByTitle(java.lang.String, eu.etaxonomy.cdm.model.common.CdmBase)
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*/
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@Override
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public List<DefinedTermBase> findByTitle(String queryString, CdmBase sessionObject) {
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checkNotInPriorView("DefinedTermDaoImpl.findByTitle(String queryString, CdmBase sessionObject)");
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Session session = getSession();
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if ( sessionObject != null ) {//attache the object to the session, TODO needed?
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session.update(sessionObject);
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}
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Query query = session.createQuery("select term from DefinedTermBase term join fetch term.representations representation where representation.label = :label");
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query.setParameter("label", queryString);
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return query.list();
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}
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@Override
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public List<DefinedTermBase> findByTitleAndClass(String queryString, Class<DefinedTermBase> clazz) {
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checkNotInPriorView("DefinedTermDaoImpl.findByTitleAndClass(String queryString, Class<DefinedTermBase> clazz)");
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Session session = getSession();
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Criteria crit = session.createCriteria(clazz);
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crit.add(Restrictions.ilike("persistentTitleCache", queryString));
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List<DefinedTermBase> results = crit.list();
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return results;
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}
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@Override
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public List<DefinedTermBase> findByTitle(String queryString, MatchMode matchMode, int page, int pagesize, List<Criterion> criteria) {
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//FIXME is query parametrised?
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checkNotInPriorView("DefinedTermDaoImpl.findByTitle(String queryString, ITitledDao.MATCH_MODE matchMode, int page, int pagesize, List<Criterion> criteria)");
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Criteria crit = getSession().createCriteria(type);
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crit.add(Restrictions.ilike("titleCache", matchMode.queryStringFrom(queryString)));
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crit.setMaxResults(pagesize);
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int firstItem = (page - 1) * pagesize + 1;
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crit.setFirstResult(firstItem);
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List<DefinedTermBase> results = crit.list();
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return results;
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}
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@Override
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public Country getCountryByIso(String iso3166) {
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// If iso639 = "" query returns non-unique result. We prevent this here:
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if (StringUtils.isBlank(iso3166) || iso3166.length()<2 || iso3166.length()>3) { return null; }
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AuditEvent auditEvent = getAuditEventFromContext();
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if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
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Query query = getSession().createQuery("from Country where iso3166_A2 = :isoCode OR idInVocabulary = :isoCode");
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query.setParameter("isoCode", iso3166);
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return (Country) query.uniqueResult();
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} else {
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AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(Country.class,auditEvent.getRevisionNumber());
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query.add(AuditEntity.property("iso3166_A2").eq(iso3166));
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query.add(AuditEntity.property("idInVocabulary").eq(iso3166));
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return (Country) query.getSingleResult();
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}
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}
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@Override
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public <T extends DefinedTermBase> List<T> getDefinedTermByRepresentationText(String text, Class<T> clazz ) {
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return getDefinedTermByRepresentationText(text,clazz,null,null);
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}
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@Override
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public <T extends DefinedTermBase> List<T> getDefinedTermByRepresentationText(String text, Class<T> clazz, Integer pageSize,Integer pageNumber) {
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checkNotInPriorView("DefinedTermDaoImpl.getDefinedTermByRepresentationText(String text, Class<T> clazz, Integer pageSize,Integer pageNumber)");
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Criteria criteria = getCriteria(clazz);
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criteria.createAlias("representations", "r").add(Restrictions.like("r.text", text));
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addPageSizeAndNumber(criteria, pageSize, pageNumber);
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@SuppressWarnings("unchecked")
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List<T> result = criteria.list();
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return result;
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}
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@Override
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public long countDefinedTermByRepresentationText(String text, Class<? extends DefinedTermBase> clazz) {
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checkNotInPriorView("DefinedTermDaoImpl.countDefinedTermByRepresentationText(String text, Class<? extends DefinedTermBase> clazz)");
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Criteria criteria = getCriteria(clazz);
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criteria.createAlias("representations", "r").add(Restrictions.like("r.text", text));
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criteria.setProjection(Projections.rowCount());
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return (Long)criteria.uniqueResult();
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}
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@Override
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public <T extends DefinedTermBase> List<T> getDefinedTermByIdInVocabulary(String label, UUID vocUuid, Class<T> clazz, Integer pageSize, Integer pageNumber) {
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checkNotInPriorView("DefinedTermDaoImpl.getDefinedTermByIdInVocabulary(String label, UUID vocUuid, Class<T> clazz, Integer pageSize, Integer pageNumber)");
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Criteria criteria = getCriteria(clazz);
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criteria.createAlias("vocabulary", "voc")
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.add(Restrictions.like("voc.uuid", vocUuid))
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.add(Restrictions.like("idInVocabulary", label, org.hibernate.criterion.MatchMode.EXACT));
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addPageSizeAndNumber(criteria, pageSize, pageNumber);
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@SuppressWarnings("unchecked")
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List<T> result = criteria.list();
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return result;
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}
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@Override
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public <T extends DefinedTermBase> List<T> getDefinedTermByRepresentationAbbrev(String text, Class<T> clazz, Integer pageSize,Integer pageNumber) {
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checkNotInPriorView("DefinedTermDaoImpl.getDefinedTermByRepresentationAbbrev(String abbrev, Class<T> clazz, Integer pageSize,Integer pageNumber)");
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Criteria criteria = getCriteria(clazz);
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criteria.createAlias("representations", "r").add(Restrictions.like("r.abbreviatedLabel", text));
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addPageSizeAndNumber(criteria, pageSize, pageNumber);
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@SuppressWarnings("unchecked")
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List<T> result = criteria.list();
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return result;
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}
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@Override
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public long countDefinedTermByRepresentationAbbrev(String text, Class<? extends DefinedTermBase> clazz) {
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checkNotInPriorView("DefinedTermDaoImpl.countDefinedTermByRepresentationAbbrev(String abbrev, Class<? extends DefinedTermBase> clazz)");
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Criteria criteria = getCriteria(clazz);
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criteria.createAlias("representations", "r").add(Restrictions.like("r.abbreviatedLabel", text));
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criteria.setProjection(Projections.rowCount());
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return (Long)criteria.uniqueResult();
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}
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@Override
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public Language getLanguageByIso(String iso639) {
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if (iso639.length() < 2 || iso639.length() > 3) {
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logger.warn("Invalid length " + iso639.length() + " of ISO code. Length must be 2 or 3.");
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return null;
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}
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boolean isIso639_1 = iso639.length() == 2;
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String queryStr;
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if (isIso639_1){
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queryStr = "from Language where iso639_1 = :isoCode";
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}else{
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queryStr = "from Language where idInVocabulary = :isoCode and vocabulary.uuid = :vocUuid";
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}
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AuditEvent auditEvent = getAuditEventFromContext();
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if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
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Query query = getSession().createQuery(queryStr);
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query.setParameter("isoCode", iso639);
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if (! isIso639_1){
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query.setParameter("vocUuid", Language.uuidLanguageVocabulary);
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}
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return (Language) query.uniqueResult();
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} else {
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AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(Language.class,auditEvent.getRevisionNumber());
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if (isIso639_1){
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query.add(AuditEntity.property("iso639_1").eq(iso639));
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}else{
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query.add(AuditEntity.property("iso639_2").eq(iso639));
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query.add(AuditEntity.property("vocabulary.uuid").eq(Language.uuidLanguageVocabulary));
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}
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return (Language)query.getSingleResult();
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}
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}
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/**
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* FIXME this will result in a query per language - could you, given that iso codes
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* are unique, use from Language where iso639_1 in (:isoCode) or iso639_2 in (:isoCode)
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*/
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@Override
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public List<Language> getLanguagesByIso(List<String> iso639List) {
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List<Language> languages = new ArrayList<Language>(iso639List.size());
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for (String iso639 : iso639List) {
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languages.add(getLanguageByIso(iso639));
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}
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return languages;
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}
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@Override
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public List<Language> getLanguagesByLocale(Enumeration<Locale> locales) {
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List<Language> languages = new ArrayList<Language>();
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while(locales.hasMoreElements()) {
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Locale locale = locales.nextElement();
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languages.add(getLanguageByIso(locale.getLanguage()));
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}
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return languages;
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}
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@Override
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public long count(NamedAreaLevel level, NamedAreaType type) {
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AuditEvent auditEvent = getAuditEventFromContext();
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if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
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Criteria criteria = getCriteria(NamedArea.class);
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if(level != null) {
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criteria.add(Restrictions.eq("level",level));
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}
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if(type != null) {
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criteria.add(Restrictions.eq("type", type));
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}
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criteria.setProjection(Projections.rowCount());
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return (Long)criteria.uniqueResult();
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} else {
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AuditQuery query = makeAuditQuery(NamedArea.class, auditEvent);
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if(level != null) {
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query.add(AuditEntity.relatedId("level").eq(level.getId()));
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}
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if(type != null) {
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query.add(AuditEntity.relatedId("type").eq(type.getId()));
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}
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query.addProjection(AuditEntity.id().count());
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return (Long)query.getSingleResult();
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}
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}
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@Override
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public long countMedia(DefinedTermBase definedTerm) {
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checkNotInPriorView("DefinedTermDaoImpl.countMedia(DefinedTermBase definedTerm)");
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Query query = getSession().createQuery("select count(media) from DefinedTermBase definedTerm join definedTerm.media media where definedTerm = :definedTerm");
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query.setParameter("definedTerm", definedTerm);
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return (Long)query.uniqueResult();
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}
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@Override
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public List<Media> getMedia(DefinedTermBase definedTerm, Integer pageSize, Integer pageNumber) {
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checkNotInPriorView("DefinedTermDaoImpl.getMedia(DefinedTermBase definedTerm, Integer pageSize, Integer pageNumber)");
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Query query = getSession().createQuery("select media from DefinedTermBase definedTerm join definedTerm.media media where definedTerm = :definedTerm");
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query.setParameter("definedTerm", definedTerm);
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addPageSizeAndNumber(query, pageSize, pageNumber);
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@SuppressWarnings("unchecked")
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List<Media> result = query.list();
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return result;
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}
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@Override
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public List<NamedArea> list(NamedAreaLevel level, NamedAreaType type, Integer pageSize, Integer pageNumber) {
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AuditEvent auditEvent = getAuditEventFromContext();
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if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
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Criteria criteria = getCriteria(NamedArea.class);
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if(level != null) {
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criteria.add(Restrictions.eq("level",level));
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}
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if(type != null) {
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criteria.add(Restrictions.eq("type", type));
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}
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379
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addPageSizeAndNumber(criteria, pageSize, pageNumber);
|
380
|
|
381
|
@SuppressWarnings("unchecked")
|
382
|
List<NamedArea> result = criteria.list();
|
383
|
return result;
|
384
|
} else {
|
385
|
AuditQuery query = makeAuditQuery(NamedArea.class, auditEvent);
|
386
|
|
387
|
if(level != null) {
|
388
|
query.add(AuditEntity.relatedId("level").eq(level.getId()));
|
389
|
}
|
390
|
|
391
|
if(type != null) {
|
392
|
query.add(AuditEntity.relatedId("type").eq(type.getId()));
|
393
|
}
|
394
|
|
395
|
@SuppressWarnings("unchecked")
|
396
|
List<NamedArea> result = query.getResultList();
|
397
|
return result;
|
398
|
}
|
399
|
}
|
400
|
|
401
|
@Override
|
402
|
public List<NamedArea> list(NamedAreaLevel level, NamedAreaType type, Integer pageSize, Integer pageNumber,
|
403
|
List<OrderHint> orderHints, List<String> propertyPaths) {
|
404
|
|
405
|
List<NamedArea> result;
|
406
|
|
407
|
AuditEvent auditEvent = getAuditEventFromContext();
|
408
|
if (auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
|
409
|
Criteria criteria = getCriteria(NamedArea.class);
|
410
|
|
411
|
if (level != null) {
|
412
|
criteria.add(Restrictions.eq("level", level));
|
413
|
}
|
414
|
if (type != null) {
|
415
|
criteria.add(Restrictions.eq("type", type));
|
416
|
}
|
417
|
addOrder(criteria,orderHints);
|
418
|
addPageSizeAndNumber(criteria, pageSize, pageNumber);
|
419
|
|
420
|
result = criteria.list();
|
421
|
|
422
|
} else {
|
423
|
AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(NamedArea.class,
|
424
|
auditEvent.getRevisionNumber());
|
425
|
if (level != null) {
|
426
|
query.add(AuditEntity.relatedId("level").eq(level.getId()));
|
427
|
}
|
428
|
if (type != null) {
|
429
|
query.add(AuditEntity.relatedId("type").eq(type.getId()));
|
430
|
}
|
431
|
result = query.getResultList();
|
432
|
}
|
433
|
|
434
|
defaultBeanInitializer.initializeAll(result, propertyPaths);
|
435
|
|
436
|
return result;
|
437
|
}
|
438
|
|
439
|
|
440
|
@Override
|
441
|
public <T extends DefinedTermBase> long countGeneralizationOf(T kindOf) {
|
442
|
AuditEvent auditEvent = getAuditEventFromContext();
|
443
|
if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
|
444
|
Query query = getSession().createQuery("select count(term) from DefinedTermBase term where term.kindOf = :kindOf");
|
445
|
query.setParameter("kindOf", kindOf);
|
446
|
return (Long)query.uniqueResult();
|
447
|
} else {
|
448
|
AuditQuery query = makeAuditQuery(DefinedTermBase.class,auditEvent);
|
449
|
query.add(AuditEntity.relatedId("kindOf").eq(kindOf.getId()));
|
450
|
query.addProjection(AuditEntity.id().count());
|
451
|
return (Long)query.getSingleResult();
|
452
|
}
|
453
|
}
|
454
|
|
455
|
@Override
|
456
|
public <T extends DefinedTermBase> long countIncludes(Collection<T> partOf) {
|
457
|
if (partOf == null || partOf.isEmpty()){
|
458
|
return 0;
|
459
|
}
|
460
|
AuditEvent auditEvent = getAuditEventFromContext();
|
461
|
if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
|
462
|
Query query = getSession().createQuery("select count(term) from DefinedTermBase term where term.partOf in (:partOf)");
|
463
|
query.setParameterList("partOf", partOf);
|
464
|
return (Long)query.uniqueResult();
|
465
|
} else {
|
466
|
long count = 0;
|
467
|
for(T t : partOf) {
|
468
|
AuditQuery query = makeAuditQuery(DefinedTermBase.class, auditEvent);
|
469
|
query.add(AuditEntity.relatedId("partOf").eq(t.getId()));
|
470
|
query.addProjection(AuditEntity.id().count());
|
471
|
count += (Long)query.getSingleResult();
|
472
|
}
|
473
|
return count;
|
474
|
}
|
475
|
}
|
476
|
|
477
|
@Override
|
478
|
public <T extends DefinedTermBase> List<T> getGeneralizationOf(T kindOf, Integer pageSize, Integer pageNumber) {
|
479
|
AuditEvent auditEvent = getAuditEventFromContext();
|
480
|
if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
|
481
|
Query query = getSession().createQuery("select term from DefinedTermBase term where term.kindOf = :kindOf");
|
482
|
query.setParameter("kindOf", kindOf);
|
483
|
|
484
|
addPageSizeAndNumber(query, pageSize, pageNumber);
|
485
|
|
486
|
@SuppressWarnings("unchecked")
|
487
|
List<T> result = query.list();
|
488
|
return result;
|
489
|
} else {
|
490
|
AuditQuery query = makeAuditQuery(DefinedTermBase.class, auditEvent);
|
491
|
query.add(AuditEntity.relatedId("kindOf").eq(kindOf.getId()));
|
492
|
|
493
|
addPageSizeAndNumber(query, pageSize, pageNumber);
|
494
|
|
495
|
@SuppressWarnings("unchecked")
|
496
|
List<T> result = query.getResultList();
|
497
|
return result;
|
498
|
}
|
499
|
}
|
500
|
|
501
|
@Override
|
502
|
public <T extends DefinedTermBase> List<T> getIncludes(Collection<T> partOf, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
503
|
if (partOf == null || partOf.isEmpty()){
|
504
|
return new ArrayList<>();
|
505
|
}
|
506
|
AuditEvent auditEvent = getAuditEventFromContext();
|
507
|
if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
|
508
|
Query query = getSession().createQuery("select term from DefinedTermBase term where term.partOf in (:partOf)");
|
509
|
query.setParameterList("partOf", partOf);
|
510
|
|
511
|
addPageSizeAndNumber(query, pageSize, pageNumber);
|
512
|
|
513
|
@SuppressWarnings("unchecked")
|
514
|
List<T> results = query.list();
|
515
|
defaultBeanInitializer.initializeAll(results, propertyPaths);
|
516
|
return results;
|
517
|
} else {
|
518
|
List<T> result = new ArrayList<T>();
|
519
|
for(T t : partOf) {
|
520
|
AuditQuery query = makeAuditQuery(DefinedTermBase.class, auditEvent);
|
521
|
query.add(AuditEntity.relatedId("partOf").eq(t.getId()));
|
522
|
addPageSizeAndNumber(query, pageSize, pageNumber);
|
523
|
|
524
|
result.addAll(query.getResultList());
|
525
|
}
|
526
|
defaultBeanInitializer.initializeAll(result, propertyPaths);
|
527
|
return result;
|
528
|
}
|
529
|
}
|
530
|
|
531
|
@Override
|
532
|
public <T extends DefinedTermBase> long countPartOf(Set<T> definedTerms) {
|
533
|
checkNotInPriorView("DefinedTermDaoImpl.countPartOf(Set<T> definedTerms)");
|
534
|
Query query = getSession().createQuery("select count(distinct definedTerm) from DefinedTermBase definedTerm join definedTerm.includes included where included in (:definedTerms)");
|
535
|
query.setParameterList("definedTerms", definedTerms);
|
536
|
return (Long)query.uniqueResult();
|
537
|
}
|
538
|
|
539
|
@Override
|
540
|
public <T extends DefinedTermBase> List<T> getPartOf(Set<T> definedTerms, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
|
541
|
checkNotInPriorView("DefinedTermDaoImpl.getPartOf(Set<T> definedTerms, Integer pageSize, Integer pageNumber)");
|
542
|
Query query = getSession().createQuery("select distinct definedTerm from DefinedTermBase definedTerm join definedTerm.includes included where included in (:definedTerms)");
|
543
|
query.setParameterList("definedTerms", definedTerms);
|
544
|
|
545
|
addPageSizeAndNumber(query, pageSize, pageNumber);
|
546
|
|
547
|
@SuppressWarnings("unchecked")
|
548
|
List<T> r = query.list();
|
549
|
/**
|
550
|
* For some weird reason, hibernate returns proxies (extending the superclass), not the actual class on this,
|
551
|
* despite querying the damn database and returning the discriminator along with the rest of the object properties!
|
552
|
*
|
553
|
* Probably a bug in hibernate, but we'll manually deproxy for now since the objects are initialized anyway, the
|
554
|
* performance implications are small (we're swapping one array of references for another, not hitting the db or
|
555
|
* cache).
|
556
|
*/
|
557
|
List<T> results = new ArrayList<>();
|
558
|
if(!definedTerms.isEmpty()) {
|
559
|
for(T t : r) {
|
560
|
T deproxied = CdmBase.deproxy(t);
|
561
|
results.add(deproxied);
|
562
|
}
|
563
|
defaultBeanInitializer.initializeAll(results, propertyPaths);
|
564
|
}
|
565
|
return results;
|
566
|
}
|
567
|
|
568
|
@Override
|
569
|
public DefinedTermBase findByUri(URI uri) {
|
570
|
AuditEvent auditEvent = getAuditEventFromContext();
|
571
|
if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
|
572
|
Query query = getSession().createQuery("select term from DefinedTermBase term where term.uri = :uri");
|
573
|
query.setParameter("uri", uri);
|
574
|
return (DefinedTermBase<?>)query.uniqueResult();
|
575
|
} else {
|
576
|
AuditQuery query = makeAuditQuery(DefinedTermBase.class, auditEvent);
|
577
|
query.add(AuditEntity.property("uri").eq(uri));
|
578
|
return (DefinedTermBase<?>)query.getSingleResult();
|
579
|
}
|
580
|
}
|
581
|
|
582
|
@Override
|
583
|
public <T extends DefinedTermBase> List<T> listByTermType(TermType termType, Integer limit, Integer start,
|
584
|
List<OrderHint> orderHints, List<String> propertyPaths) {
|
585
|
Query query = getSession().createQuery("SELECT term FROM DefinedTermBase term WHERE term.termType = :termType");
|
586
|
query.setParameter("termType", termType);
|
587
|
|
588
|
@SuppressWarnings("unchecked")
|
589
|
List<T> result = query.list();
|
590
|
|
591
|
defaultBeanInitializer.initializeAll(result, propertyPaths);
|
592
|
return result;
|
593
|
}
|
594
|
|
595
|
@Override
|
596
|
public <TERM extends DefinedTermBase> List<TERM> listByTermClass(Class<TERM> clazz, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
|
597
|
// checkNotInPriorView("DefinedTermDaoImpl.listByTermClass(Class<TERM> clazz, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths)");
|
598
|
|
599
|
Query query = getSession().createQuery("FROM " + clazz.getSimpleName());
|
600
|
|
601
|
@SuppressWarnings("unchecked")
|
602
|
List<TERM> result = query.list();
|
603
|
|
604
|
defaultBeanInitializer.initializeAll(result, propertyPaths);
|
605
|
|
606
|
return result;
|
607
|
}
|
608
|
|
609
|
@Override
|
610
|
public <S extends DefinedTermBase> List<S> list(Class<S> type, Integer limit, Integer start,
|
611
|
List<OrderHint> orderHints, List<String> propertyPath) {
|
612
|
|
613
|
return deduplicateResult(super.list(type, limit, start, orderHints, propertyPath));
|
614
|
}
|
615
|
|
616
|
/**
|
617
|
* Workaround for http://dev.e-taxonomy.eu/trac/ticket/5871 and #5945
|
618
|
* Terms with multiple representations return identical duplicates
|
619
|
* due to eager representation loading. We expect these duplicates to appear
|
620
|
* in line wo we only compare one term with its predecessor. If it already
|
621
|
* exists we remove it from the result.
|
622
|
* @param orginals
|
623
|
* @return
|
624
|
*/
|
625
|
private <S extends DefinedTermBase<?>> List<S> deduplicateResult(List<S> orginals) {
|
626
|
List<S> result = new ArrayList<>();
|
627
|
Iterator<S> it = orginals.iterator();
|
628
|
S last = null;
|
629
|
while (it.hasNext()){
|
630
|
S a = it.next();
|
631
|
if (a != last){
|
632
|
if (!result.contains(a)){
|
633
|
result.add(a);
|
634
|
}
|
635
|
}
|
636
|
last = a;
|
637
|
}
|
638
|
return result;
|
639
|
}
|
640
|
|
641
|
|
642
|
@Override
|
643
|
public List<NamedArea> getUuidAndTitleCache(List<TermVocabulary> vocs, Integer limit, String pattern){
|
644
|
Session session = getSession();
|
645
|
Query query = null;
|
646
|
if (pattern != null){
|
647
|
if (vocs != null && !vocs.isEmpty()){
|
648
|
query = session.createQuery("from NamedArea where titleCache like :pattern and vocabulary in :vocs");
|
649
|
query.setParameterList("vocs", vocs);
|
650
|
}else{
|
651
|
query = session.createQuery("from NamedArea where titleCache like :pattern ");
|
652
|
}
|
653
|
pattern = pattern.replace("*", "%");
|
654
|
pattern = pattern.replace("?", "_");
|
655
|
pattern = pattern + "%";
|
656
|
query.setParameter("pattern", pattern);
|
657
|
|
658
|
} else {
|
659
|
query = session.createQuery("FROM NamedArea WHERE vocabulary IN :vocs");
|
660
|
query.setParameterList("vocs", vocs);
|
661
|
}
|
662
|
if (limit != null){
|
663
|
query.setMaxResults(limit);
|
664
|
}
|
665
|
@SuppressWarnings("unchecked")
|
666
|
List<NamedArea> result = query.list();
|
667
|
return result;
|
668
|
}
|
669
|
|
670
|
@Override
|
671
|
public Collection<TermDto> getIncludesAsDto(
|
672
|
TermDto parentTerm) {
|
673
|
String queryString = TermDto.getTermDtoSelect()
|
674
|
+ "where a.partOf.uuid = :parentUuid";
|
675
|
Query query = getSession().createQuery(queryString);
|
676
|
query.setParameter("parentUuid", parentTerm.getUuid());
|
677
|
|
678
|
@SuppressWarnings("unchecked")
|
679
|
List<Object[]> result = query.list();
|
680
|
|
681
|
List<TermDto> list = TermDto.termDtoListFrom(result);
|
682
|
return list;
|
683
|
}
|
684
|
|
685
|
@Override
|
686
|
public Collection<TermDto> getKindOfsAsDto(
|
687
|
TermDto parentTerm) {
|
688
|
String queryString = TermDto.getTermDtoSelect()
|
689
|
+ "where a.kindOf.uuid = :parentUuid";
|
690
|
Query query = getSession().createQuery(queryString);
|
691
|
query.setParameter("parentUuid", parentTerm.getUuid());
|
692
|
|
693
|
@SuppressWarnings("unchecked")
|
694
|
List<Object[]> result = query.list();
|
695
|
|
696
|
List<TermDto> list = TermDto.termDtoListFrom(result);
|
697
|
return list;
|
698
|
}
|
699
|
|
700
|
@Override
|
701
|
public Collection<TermDto> findByTitleAsDto(String title, TermType termType) {
|
702
|
String queryString = TermDto.getTermDtoSelect()
|
703
|
+ " where a.titleCache like :title "
|
704
|
+ (termType!=null?" and a.termType = :termType ":"");
|
705
|
Query query = getSession().createQuery(queryString);
|
706
|
query.setParameter("title", "%"+title+"%");
|
707
|
if(termType!=null){
|
708
|
query.setParameter("termType", termType);
|
709
|
}
|
710
|
|
711
|
@SuppressWarnings("unchecked")
|
712
|
List<Object[]> result = query.list();
|
713
|
|
714
|
List<TermDto> list = TermDto.termDtoListFrom(result);
|
715
|
return list;
|
716
|
}
|
717
|
|
718
|
}
|