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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.strategy.cache.name;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertNotNull;
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import static org.junit.Assert.assertNull;
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import java.lang.reflect.InvocationTargetException;
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import java.lang.reflect.Method;
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import org.apache.log4j.Logger;
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import org.junit.Before;
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import org.junit.BeforeClass;
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import org.junit.Test;
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import eu.etaxonomy.cdm.model.agent.INomenclaturalAuthor;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.common.DefaultTermInitializer;
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import eu.etaxonomy.cdm.model.name.NonViralName;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.ZoologicalName;
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/**
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* @author a.mueller
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*
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*/
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public class ZoologicalNameCacheStrategyTest {
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private static final Logger logger = Logger.getLogger(ZoologicalNameCacheStrategyTest.class);
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private ZooNameDefaultCacheStrategy strategy;
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private ZoologicalName familyName;
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private ZoologicalName genusName;
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private ZoologicalName subGenusName;
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private ZoologicalName speciesName;
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private ZoologicalName subSpeciesName;
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private INomenclaturalAuthor author;
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private INomenclaturalAuthor exAuthor;
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private INomenclaturalAuthor basAuthor;
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private INomenclaturalAuthor exBasAuthor;
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private final String familyNameString = "Familia";
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private final String genusNameString = "Genus";
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private final String speciesNameString = "Abies alba";
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private final String subSpeciesNameString = "Abies alba subsp. beta";
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private final String authorString = "L.";
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private final String exAuthorString = "Exaut.";
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private final String basAuthorString = "Basio, A.";
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private final String exBasAuthorString = "ExBas. N.";
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private final Integer publicationYear = 1928;
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private final Integer originalPublicationYear = 1860;
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/**
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* @throws java.lang.Exception
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*/
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@BeforeClass
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public static void setUpBeforeClass() {
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DefaultTermInitializer vocabularyStore = new DefaultTermInitializer();
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vocabularyStore.initialize();
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}
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/**
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* @throws java.lang.Exception
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*/
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@Before
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public void setUp() throws Exception {
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strategy = ZooNameDefaultCacheStrategy.NewInstance();
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familyName = ZoologicalName.PARSED_NAME(familyNameString, Rank.FAMILY());
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genusName = ZoologicalName.PARSED_NAME(genusNameString, Rank.GENUS());
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subGenusName = ZoologicalName.NewInstance(Rank.SUBGENUS());
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subGenusName.setGenusOrUninomial("Genus");
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subGenusName.setInfraGenericEpithet("InfraGenericPart");
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speciesName = ZoologicalName.PARSED_NAME(speciesNameString);
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subSpeciesName = ZoologicalName.PARSED_NAME(subSpeciesNameString);
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author = Person.NewInstance();
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author.setNomenclaturalTitle(authorString);
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exAuthor = Person.NewInstance();
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exAuthor.setNomenclaturalTitle(exAuthorString);
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basAuthor = Person.NewInstance();
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basAuthor.setNomenclaturalTitle(basAuthorString);
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exBasAuthor = Person.NewInstance();
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exBasAuthor.setNomenclaturalTitle(exBasAuthorString);
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}
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/********* TEST *******************************************/
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy#NewInstance()}.
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*/
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@Test
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public final void testNewInstance() {
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assertNotNull(strategy);
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy#getNameCache(eu.etaxonomy.cdm.model.common.CdmBase)}.
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*/
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@Test
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public final void testGetNameCache() {
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assertEquals(subSpeciesNameString, subSpeciesName.getNameCache());
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assertNull(subSpeciesNameString, strategy.getNameCache(null));
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy#getFullNameCache(eu.etaxonomy.cdm.model.common.CdmBase)}.
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*/
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@Test
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public final void testGetTitleCache() {
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assertNull(subSpeciesNameString, strategy.getTitleCache(null));
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subSpeciesName.setCombinationAuthorTeam(author);
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subSpeciesName.setExCombinationAuthorTeam(exAuthor);
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subSpeciesName.setBasionymAuthorTeam(basAuthor);
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subSpeciesName.setExBasionymAuthorTeam(exBasAuthor);
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subSpeciesName.setPublicationYear(publicationYear);
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subSpeciesName.setOriginalPublicationYear(originalPublicationYear);
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assertEquals(subSpeciesNameString, strategy.getNameCache(subSpeciesName));
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assertEquals(subSpeciesNameString + " (" + exBasAuthorString + " ex " + basAuthorString + ", " + originalPublicationYear +")" + " " + exAuthorString + " ex " + authorString + ", " + publicationYear, strategy.getTitleCache(subSpeciesName));
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//Autonym,
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subSpeciesName.setInfraSpecificEpithet("alba");
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subSpeciesName.setCombinationAuthorTeam(author);
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subSpeciesName.setBasionymAuthorTeam(null);
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subSpeciesName.setExCombinationAuthorTeam(null);
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subSpeciesName.setExBasionymAuthorTeam(null);
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//old
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//assertEquals("Abies alba alba", strategy.getNameCache(subSpeciesName));
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//assertEquals("Abies alba L. subsp. alba", strategy.getTitleCache(subSpeciesName));
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//new we now assume that there are no autonyms in zoology (source: they do not exist in Fauna Europaea)
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assertEquals("Abies alba subsp. alba", strategy.getNameCache(subSpeciesName));
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assertEquals("Abies alba subsp. alba (1860) L., 1928", strategy.getTitleCache(subSpeciesName));
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy#getAuthorCache(eu.etaxonomy.cdm.model.common.CdmBase)}.
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*/
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@Test
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public final void testGetAuthorshipCache() {
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subSpeciesName.setCombinationAuthorTeam(author);
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assertEquals(authorString, strategy.getAuthorshipCache(subSpeciesName));
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subSpeciesName.setPublicationYear(publicationYear);
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assertEquals(authorString + ", " + publicationYear, strategy.getAuthorshipCache(subSpeciesName));
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subSpeciesName.setExCombinationAuthorTeam(exAuthor);
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assertEquals( exAuthorString + " ex " + authorString + ", " + publicationYear , strategy.getAuthorshipCache(subSpeciesName));
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subSpeciesName.setBasionymAuthorTeam(basAuthor);
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assertEquals("(" + basAuthorString + ")" + " " + exAuthorString + " ex " + authorString + ", " + publicationYear , strategy.getAuthorshipCache(subSpeciesName));
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subSpeciesName.setOriginalPublicationYear(originalPublicationYear);
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assertEquals("(" + basAuthorString + ", " + originalPublicationYear + ")" + " " + exAuthorString + " ex " + authorString + ", " + publicationYear , strategy.getAuthorshipCache(subSpeciesName));
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subSpeciesName.setExBasionymAuthorTeam(exBasAuthor);
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assertEquals("(" + exBasAuthorString + " ex " + basAuthorString + ", " + originalPublicationYear + ")" + " " + exAuthorString + " ex " + authorString + ", " + publicationYear , strategy.getAuthorshipCache(subSpeciesName));
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//cache
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subSpeciesName.setAuthorshipCache(authorString);
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assertEquals("AuthorshipCache must be updated", authorString, subSpeciesName.getAuthorshipCache());
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assertEquals("TitleCache must be updated", "Abies alba subsp. beta " + authorString, subSpeciesName.getTitleCache());
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subSpeciesName.setProtectedAuthorshipCache(false);
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//TODO make this not needed
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subSpeciesName.setTitleCache(null, false);
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assertEquals("TitleCache must be updated", "Abies alba subsp. beta " + "(ExBas. N. ex Basio, A., 1860) Exaut. ex L., 1928", subSpeciesName.getTitleCache());
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assertNull("Authorship cache for null must return null", strategy.getAuthorshipCache(null));
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy#getUninomialNameCache(eu.etaxonomy.cdm.model.name.BotanicalName)}.
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*/
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@Test
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public final void testGetGenusOrUninomialNameCache() {
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assertEquals(familyNameString, strategy.getNameCache(familyName));
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy#getInfraGenusNameCache(eu.etaxonomy.cdm.model.name.BotanicalName)}.
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*/
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@Test
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public final void testGetInfraGenusNameCache() {
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String methodName = "getInfraGenusNameCache";
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Method method = getMethod(NonViralNameDefaultCacheStrategy.class, methodName, NonViralName.class);
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this.getValue(method, strategy, subGenusName);
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assertEquals("Genus subg. InfraGenericPart", strategy.getNameCache(subGenusName));
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy#getSpeciesNameCache(eu.etaxonomy.cdm.model.name.BotanicalName)}.
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*/
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@Test
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public final void testGetSpeciesNameCache() {
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assertEquals(speciesNameString, strategy.getNameCache(speciesName));
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy#getInfraSpeciesNameCache(eu.etaxonomy.cdm.model.name.BotanicalName)}.
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*/
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@Test
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public final void testGetInfraSpeciesNameCache() {
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assertEquals(subSpeciesNameString, strategy.getNameCache(subSpeciesName));
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy#getInfraSpeciesNameCache(eu.etaxonomy.cdm.model.name.BotanicalName)}.
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*/
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@Test
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public final void testAutonyms() {
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subSpeciesName.setInfraSpecificEpithet("alba");
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subSpeciesName.setCombinationAuthorTeam(author);
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//old
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// assertEquals("Abies alba alba", strategy.getNameCache(subSpeciesName));
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// assertEquals("Abies alba L. subsp. alba", strategy.getTitleCache(subSpeciesName));
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//new
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//new: we now assume that there are no autonyms in zoology (source: they do not exist in Fauna Europaea)
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assertEquals("Abies alba subsp. alba", strategy.getNameCache(subSpeciesName));
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assertEquals("Abies alba subsp. alba L.", strategy.getTitleCache(subSpeciesName));
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}
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protected Method getMethod(Class clazz, String methodName, Class paramClazzes){
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Method method;
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try {
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method = clazz.getDeclaredMethod("getInfraGenusNameCache", paramClazzes);
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} catch (SecurityException e) {
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logger.error("SecurityException " + e.getMessage());
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return null;
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} catch (NoSuchMethodException e) {
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logger.error("NoSuchMethodException " + e.getMessage());
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return null;
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}
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return method;
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}
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protected String getValue(Method method, Object object,Object parameter){
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try {
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return (String)method.invoke(object, parameter);
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} catch (IllegalArgumentException e) {
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logger.error("IllegalArgumentException " + e.getMessage());
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return null;
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} catch (IllegalAccessException e) {
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logger.error("IllegalAccessException " + e.getMessage());
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return null;
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} catch (InvocationTargetException e) {
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logger.error("InvocationTargetException " + e.getMessage());
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return null;
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}
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}
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}
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