Project

General

Profile

Download (8.77 KB) Statistics
| Branch: | Tag: | Revision:
1
/**
2
* Copyright (C) 2007 EDIT
3
* European Distributed Institute of Taxonomy 
4
* http://www.e-taxonomy.eu
5
* 
6
* The contents of this file are subject to the Mozilla Public License Version 1.1
7
* See LICENSE.TXT at the top of this package for the full license terms.
8
*/
9

    
10
package eu.etaxonomy.cdm.model.name;
11

    
12
import javax.persistence.Entity;
13
import javax.persistence.FetchType;
14
import javax.persistence.ManyToOne;
15
import javax.persistence.Transient;
16
import javax.xml.bind.annotation.XmlAccessType;
17
import javax.xml.bind.annotation.XmlAccessorType;
18
import javax.xml.bind.annotation.XmlElement;
19
import javax.xml.bind.annotation.XmlIDREF;
20
import javax.xml.bind.annotation.XmlSchemaType;
21
import javax.xml.bind.annotation.XmlType;
22

    
23
import org.apache.log4j.Logger;
24
import org.hibernate.annotations.Cascade;
25
import org.hibernate.annotations.CascadeType;
26
import org.hibernate.envers.Audited;
27

    
28
import eu.etaxonomy.cdm.model.common.RelationshipBase;
29
import eu.etaxonomy.cdm.model.reference.Reference;
30
import eu.etaxonomy.cdm.validation.Level3;
31
import eu.etaxonomy.cdm.validation.annotation.NamesWithHomotypicRelationshipsMustBelongToSameGroup;
32

    
33
/**
34
 * The class representing a relationship between two {@link TaxonNameBase taxon names} according
35
 * to the {@link NomenclaturalCode nomenclatural code} which governs both of them. 
36
 * This includes a {@link NameRelationshipType name relationship type} (for instance "later homonym" or
37
 * "orthographic variant") and the article of the corresponding nomenclatural
38
 * code on which the assignation of the relationship type is based.
39
 * <P>
40
 * This class corresponds partially to: <ul>
41
 * <li> Relationship according to the TDWG ontology
42
 * <li> TaxonRelationship according to the TCS
43
 * </ul>
44
 * 
45
 * @author m.doering
46
 * @version 1.0
47
 * @created 08-Nov-2007 13:06:37
48
 */
49
@XmlAccessorType(XmlAccessType.FIELD)
50
@XmlType(name = "NameRelationship", propOrder = {
51
	"relatedFrom",
52
	"relatedTo",
53
	"type",
54
    "ruleConsidered"
55
})
56
@Entity
57
@Audited
58
@NamesWithHomotypicRelationshipsMustBelongToSameGroup(groups = {Level3.class})
59
public class NameRelationship extends RelationshipBase<TaxonNameBase, TaxonNameBase, NameRelationshipType> implements Cloneable{
60

    
61
  static Logger logger = Logger.getLogger(NameRelationship.class);
62

    
63
    //The nomenclatural code rule considered. The article/note/recommendation in the code in question that is commented on in
64
	//the note property.
65
    @XmlElement(name = "RuleConsidered")
66
	private String ruleConsidered;
67
    
68
    @XmlElement(name = "RelatedFrom")
69
    @XmlIDREF
70
    @XmlSchemaType(name = "IDREF")
71
    @ManyToOne(fetch=FetchType.LAZY)
72
    @Cascade({CascadeType.SAVE_UPDATE})
73
	private TaxonNameBase relatedFrom;
74

    
75
	@XmlElement(name = "RelatedTo")
76
    @XmlIDREF
77
    @XmlSchemaType(name = "IDREF")
78
    @ManyToOne(fetch=FetchType.LAZY)
79
    @Cascade(CascadeType.SAVE_UPDATE)
80
	private TaxonNameBase relatedTo;
81
	
82
    @XmlElement(name = "Type")
83
    @XmlIDREF
84
    @XmlSchemaType(name = "IDREF")
85
    @ManyToOne(fetch = FetchType.LAZY)
86
	private NameRelationshipType type;
87

    
88
    /**
89
	 * @deprecated for hibernate use only, don't use
90
	 */
91
	@Deprecated
92
	private NameRelationship(){
93
		super();
94
	}
95

    
96
	
97
	// ************* CONSTRUCTORS *************/	
98
	/**
99
	 * Class constructor: creates a new name relationship instance with no
100
	 * reference and adds it to the respective
101
	 * {@link TaxonNameBase#getNameRelations() taxon name relation sets} of both involved names.
102
	 * 
103
	 * @param toName			the taxon name to be set as target for the new name relationship
104
	 * @param fromName			the taxon name to be set as source for the new name relationship
105
	 * @param type				the relationship type to be assigned to the new name relationship
106
	 * @param ruleConsidered	the string indicating the article of the nomenclatural code for the new name relationship
107
	 * @see						#NameRelationship(TaxonNameBase, TaxonNameBase, NameRelationshipType, Reference, String, String)
108
	 * @see						TaxonNameBase#addNameRelationship(NameRelationship)
109
	 * @see						TaxonNameBase#addRelationshipFromName(TaxonNameBase, NameRelationshipType, String)
110
	 * @see						TaxonNameBase#addRelationshipToName(TaxonNameBase, NameRelationshipType, String)
111
	 */
112
	protected NameRelationship(TaxonNameBase toName, TaxonNameBase fromName, NameRelationshipType type, String ruleConsidered) {
113
		this(toName, fromName, type, null, null, ruleConsidered);
114
	}
115
	
116
	/**
117
	 * Class constructor: creates a new name relationship instance including
118
	 * its {@link  eu.etaxonomy.cdm.model.reference.Reference reference source} and adds it to the respective 
119
	 *{@link TaxonNameBase#getNameRelations() taxon name relation sets} of both involved names.
120
	 * 
121
	 * @param toName				the taxon name to be set as target for the new name relationship
122
	 * @param fromName				the taxon name to be set as source for the new name relationship
123
	 * @param type					the relationship type to be assigned to the new name relationship
124
	 * @param citation				the reference source for the new name relationship
125
	 * @param citationMicroReference	the string with the details describing the exact localisation within the reference
126
	 * @param ruleConsidered		the string indicating the article of the nomenclatural code justifying the new name relationship
127
	 * @see							#NameRelationship(TaxonNameBase, TaxonNameBase, NameRelationshipType, String)
128
	 * @see							TaxonNameBase#addNameRelationship(NameRelationship)
129
	 * @see							TaxonNameBase#addRelationshipFromName(TaxonNameBase, NameRelationshipType, String)
130
	 * @see							TaxonNameBase#addRelationshipToName(TaxonNameBase, NameRelationshipType, String)
131
	 */
132
	protected NameRelationship(TaxonNameBase  toName, TaxonNameBase fromName, NameRelationshipType type, Reference citation, String citationMicroReference, String ruleConsidered) {
133
		super(fromName, toName, type, citation, citationMicroReference);
134
		this.setRuleConsidered(ruleConsidered);
135
	}
136
	
137
	//********* METHODS **************************************/
138

    
139
	/** 
140
	 * Returns the {@link TaxonNameBase taxon name} that plays the source role
141
	 * in <i>this</i> taxon name relationship.
142
	 *  
143
	 * @see   #getToName()
144
	 * @see   eu.etaxonomy.cdm.model.common.RelationshipBase#getRelatedFrom()
145
	 */
146
	@Transient
147
	public TaxonNameBase getFromName(){
148
		return this.getRelatedFrom();
149
	}
150
	
151
	/**
152
	 * @see  #getFromName()
153
	 */
154
	void setFromName(TaxonNameBase fromName){
155
		this.setRelatedFrom(fromName);
156
	}
157

    
158
	/** 
159
	 * Returns the {@link TaxonNameBase taxon name} that plays the target role
160
	 * in <i>this</i> taxon name relationship.
161
	 *  
162
	 * @see   #getFromName()
163
	 * @see   eu.etaxonomy.cdm.model.common.RelationshipBase#getRelatedTo()
164
	 */
165
	@Transient
166
	public TaxonNameBase getToName(){
167
		return this.getRelatedTo();
168
	}
169
	
170
	/**
171
	 * @see  #getToName()
172
	 */
173
	void setToName(TaxonNameBase toName){
174
		this.setRelatedTo(toName);
175
	}
176

    
177
	/** 
178
	 * Returns the nomenclatural code rule considered (that is the
179
	 * article/note/recommendation in the nomenclatural code ruling
180
	 * the  taxon name(s) of this nomenclatural status).
181
	 * The considered rule gives the reason why the
182
	 * {@link NomenclaturalStatusType nomenclatural status type} has been
183
	 * assigned to the {@link TaxonNameBase taxon name(s)}.
184
	 */
185
	public String getRuleConsidered(){
186
		return this.ruleConsidered;
187
	}
188

    
189
	/**
190
	 * @see  #getRuleConsidered()
191
	 */
192
	public void setRuleConsidered(String ruleConsidered){
193
		this.ruleConsidered = ruleConsidered;
194
	}
195

    
196
	protected TaxonNameBase getRelatedFrom() {
197
		return relatedFrom;
198
	}
199

    
200
	protected TaxonNameBase getRelatedTo() {
201
		return relatedTo;
202
	}
203

    
204
	public NameRelationshipType getType() {
205
		return type;
206
	}
207

    
208
	protected void setRelatedFrom(TaxonNameBase relatedFrom) {
209
		if (relatedFrom == null){
210
			this.deletedObjects.add(this.relatedFrom);
211
		}
212
		this.relatedFrom = relatedFrom;
213
	}
214

    
215
	protected void setRelatedTo(TaxonNameBase relatedTo) {
216
		if (relatedTo == null){
217
			this.deletedObjects.add(this.relatedTo);
218
		}
219
		this.relatedTo = relatedTo;
220
	}
221

    
222
	public void setType(NameRelationshipType type) {
223
		this.type = type;
224
	}
225
	
226
	
227
//*********************** CLONE ********************************************************/
228
	
229
	/** 
230
	 * Clones <i>this</i> name relationship. This is a shortcut that enables to create
231
	 * a new instance that differs only slightly from <i>this</i> name relationship by
232
	 * modifying only some of the attributes.<BR>
233
	 * CAUTION: Cloning a relationship will not add the relationship to the according 
234
	 * {@link #relatedFrom} and {@link #relatedTo} objects. The method is meant to be used
235
	 * mainly for internal purposes (e.g. used within {@link TaxonNameBase#clone()}
236
	 * 
237
	 * @see eu.etaxonomy.cdm.model.common.RelationshipBase#clone()
238
	 * @see java.lang.Object#clone()
239
	 */
240
	@Override
241
	public Object clone() {
242
		NameRelationship result;
243
		try {
244
			result = (NameRelationship)super.clone();
245
			//no changes to: relatedFrom, relatedTo, type
246
			return result;
247
		} catch (CloneNotSupportedException e) {
248
			logger.warn("Object does not implement cloneable");
249
			e.printStackTrace();
250
			return null;
251
		}
252
	}	
253
}
(8-8/26)