Revision 664e623c
Added by Andreas Müller almost 7 years ago
cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/DescriptionElementSource.java | ||
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// $Id$ |
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/** |
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* Copyright (C) 2007 EDIT |
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* European Distributed Institute of Taxonomy |
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* http://www.e-taxonomy.eu |
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* |
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* The contents of this file are subject to the Mozilla Public License Version 1.1 |
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* See LICENSE.TXT at the top of this package for the full license terms. |
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*/ |
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package eu.etaxonomy.cdm.model.description; |
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import javax.persistence.Column; |
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import javax.persistence.Entity; |
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import javax.persistence.FetchType; |
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import javax.persistence.JoinColumn; |
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import javax.persistence.ManyToOne; |
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import javax.xml.bind.annotation.XmlElement; |
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import javax.xml.bind.annotation.XmlIDREF; |
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import javax.xml.bind.annotation.XmlSchemaType; |
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import javax.xml.bind.annotation.XmlType; |
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import org.apache.log4j.Logger; |
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import org.hibernate.annotations.Any; |
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import org.hibernate.annotations.Cascade; |
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import org.hibernate.annotations.CascadeType; |
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import org.hibernate.envers.Audited; |
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import org.hibernate.envers.NotAudited; |
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import eu.etaxonomy.cdm.model.common.OriginalSourceBase; |
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import eu.etaxonomy.cdm.model.common.OriginalSourceType; |
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import eu.etaxonomy.cdm.model.name.TaxonNameBase; |
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import eu.etaxonomy.cdm.model.reference.Reference; |
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/** |
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* This class represents an {@link eu.etaxonomy.cdm.model.common.IOriginalSource IOriginalSource} |
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* that can be used with {@link eu.etaxonomy.cdm.model.description.DescriptionElementBase description elements}. |
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* Additionally to the core functionally of IOriginalSource a {@link eu.etaxonomy.cdm.model.name.TaxonNameBase taxon name} |
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* can be stored that points to the name used in the source. This is needed because description always belong |
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* to accepted taxa while the referenced citations may use synonym names. |
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* </BR> |
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* The use of "originalNameString" within a DescriptionElementSource has to be discussed. |
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* In general this string is to be used for different representations of the sourced object. In this classes |
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* context it could also stand for the string representation of the taxon name used in the source. This |
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* may make sense if the taxon name is not available in the CDM and the user for some reason does not want |
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* to create a new ful {@link eu.etaxonomy.cdm.model.name.TaxonNameBase taxon name}. |
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* |
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* @author a.mueller |
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* @created 18.09.2009 |
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*/ |
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@XmlType(name = "DescriptionElementSource", propOrder = { |
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"sourcedObj", |
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"nameUsedInSource" |
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}) |
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@Entity |
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@Audited |
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public class DescriptionElementSource extends OriginalSourceBase<DescriptionElementBase>{ |
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private static final long serialVersionUID = -8487673428764273806L; |
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@SuppressWarnings("unused") |
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private static final Logger logger = Logger.getLogger(DescriptionElementSource.class); |
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/** |
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* Factory method |
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* @return |
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*/ |
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public static DescriptionElementSource NewInstance(OriginalSourceType type){ |
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return new DescriptionElementSource(type); |
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} |
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public static DescriptionElementSource NewDataImportInstance(String id){ |
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DescriptionElementSource result = new DescriptionElementSource(OriginalSourceType.Import); |
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result.setIdInSource(id); |
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return result; |
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} |
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public static DescriptionElementSource NewDataImportInstance(String id, String idNamespace){ |
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DescriptionElementSource result = NewDataImportInstance(id); |
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result.setIdNamespace(idNamespace); |
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return result; |
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} |
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public static DescriptionElementSource NewDataImportInstance(String id, String idNamespace, Reference ref){ |
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DescriptionElementSource result = NewDataImportInstance(id, idNamespace); |
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result.setCitation(ref); |
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return result; |
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} |
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public static DescriptionElementSource NewInstance(OriginalSourceType type, String id, String idNamespace, Reference citation){ |
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DescriptionElementSource result = NewInstance(type); |
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result.setIdInSource(id); |
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result.setIdNamespace(idNamespace); |
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result.setCitation(citation); |
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return result; |
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} |
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public static DescriptionElementSource NewInstance(OriginalSourceType type, String id, String idNamespace, Reference citation, String microCitation){ |
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DescriptionElementSource result = NewInstance(type, id, idNamespace, citation); |
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result.setCitationMicroReference(microCitation); |
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return result; |
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} |
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public static DescriptionElementSource NewInstance(OriginalSourceType type, String id, String idNamespace, Reference citation, String microReference, TaxonNameBase nameUsedInSource, String originalNameString){ |
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DescriptionElementSource result = NewInstance(type, id, idNamespace, citation, microReference); |
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result.setNameUsedInSource(nameUsedInSource); |
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result.setOriginalNameString(originalNameString); |
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return result; |
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} |
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public static DescriptionElementSource NewPrimarySourceInstance(Reference citation, String microCitation){ |
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DescriptionElementSource result = NewInstance(OriginalSourceType.PrimaryTaxonomicSource); |
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result.setCitation(citation); |
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result.setCitationMicroReference(microCitation); |
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return result; |
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} |
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public static DescriptionElementSource NewPrimarySourceInstance(Reference citation, String microReference, TaxonNameBase nameUsedInSource, String originalNameString){ |
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DescriptionElementSource result = NewPrimarySourceInstance(citation, microReference); |
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result.setNameUsedInSource(nameUsedInSource); |
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result.setOriginalNameString(originalNameString); |
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return result; |
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} |
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@XmlElement(name = "SourcedObject") |
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@XmlIDREF |
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@XmlSchemaType(name = "IDREF") |
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@Any(metaDef = "CdmBase", |
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metaColumn=@Column(name = "sourcedObj_type"), |
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fetch = FetchType.LAZY, |
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optional = false) |
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@JoinColumn(name = "sourcedObj_id") |
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@ManyToOne(fetch = FetchType.LAZY) |
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@Cascade({CascadeType.SAVE_UPDATE,CascadeType.MERGE}) |
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@NotAudited |
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private DescriptionElementBase sourcedObj; |
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@XmlElement(name = "nameUsedInSource") |
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@XmlIDREF |
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@XmlSchemaType(name = "IDREF") |
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@ManyToOne(fetch = FetchType.LAZY) |
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@Cascade({CascadeType.SAVE_UPDATE,CascadeType.MERGE}) |
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private TaxonNameBase<?,?> nameUsedInSource; |
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//*********************** CONSTRUCTOR ******************************/ |
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//for hibernate use only |
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private DescriptionElementSource(){ |
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super(); |
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} |
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private DescriptionElementSource(OriginalSourceType type){ |
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super(type); |
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} |
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// ************************** GETTER / SETTER ***************************/ |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.model.common.IOriginalSource#getSourcedObj() |
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*/ |
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@Override |
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public DescriptionElementBase getSourcedObj() { |
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return sourcedObj; |
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} |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.model.common.IOriginalSource#setSourcedObj(eu.etaxonomy.cdm.model.common.ISourceable) |
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*/ |
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@Override |
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public void setSourcedObj(DescriptionElementBase sourcedObj) { |
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this.sourcedObj = sourcedObj; |
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} |
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/** |
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* @return the taxonNameUsedInSource |
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*/ |
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public TaxonNameBase getNameUsedInSource() { |
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return nameUsedInSource; |
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} |
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/** |
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* @param nameUsedInReference the nameUsedInReference to set |
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*/ |
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public void setNameUsedInSource(TaxonNameBase nameUsedInSource) { |
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this.nameUsedInSource = nameUsedInSource; |
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} |
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//*********************************** CLONE *********************************************************/ |
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/** |
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* Clones this original source and sets the clones sourced object to 'sourceObj' |
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* @see java.lang.Object#clone() |
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*/ |
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public DescriptionElementSource clone(DescriptionElementBase sourcedObj) throws CloneNotSupportedException{ |
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DescriptionElementSource result = (DescriptionElementSource)clone(); |
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result.setSourcedObj(sourcedObj); |
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return result; |
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} |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.model.common.OriginalSourceBase#clone() |
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* @see java.lang.Object#clone() |
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*/ |
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@Override |
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public Object clone() throws CloneNotSupportedException{ |
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DescriptionElementSource result = (DescriptionElementSource)super.clone(); |
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//no changes to: sourcedObj |
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return result; |
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} |
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} |
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// $Id$ |
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2 |
/** |
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3 |
* Copyright (C) 2007 EDIT |
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4 |
* European Distributed Institute of Taxonomy |
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5 |
* http://www.e-taxonomy.eu |
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6 |
* |
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* The contents of this file are subject to the Mozilla Public License Version 1.1 |
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* See LICENSE.TXT at the top of this package for the full license terms. |
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*/ |
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|
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package eu.etaxonomy.cdm.model.description; |
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|
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import javax.persistence.Column; |
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import javax.persistence.Entity; |
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import javax.persistence.FetchType; |
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import javax.persistence.JoinColumn; |
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import javax.persistence.ManyToOne; |
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import javax.xml.bind.annotation.XmlElement; |
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import javax.xml.bind.annotation.XmlIDREF; |
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import javax.xml.bind.annotation.XmlSchemaType; |
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import javax.xml.bind.annotation.XmlType; |
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|
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import org.apache.log4j.Logger; |
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import org.hibernate.annotations.Any; |
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import org.hibernate.annotations.Cascade; |
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import org.hibernate.annotations.CascadeType; |
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import org.hibernate.envers.Audited; |
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import org.hibernate.envers.NotAudited; |
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import eu.etaxonomy.cdm.model.common.OriginalSourceBase; |
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import eu.etaxonomy.cdm.model.common.OriginalSourceType; |
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import eu.etaxonomy.cdm.model.name.TaxonNameBase; |
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import eu.etaxonomy.cdm.model.reference.Reference; |
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|
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/** |
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* This class represents an {@link eu.etaxonomy.cdm.model.common.IOriginalSource IOriginalSource} |
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* that can be used with {@link eu.etaxonomy.cdm.model.description.DescriptionElementBase description elements}. |
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* Additionally to the core functionally of IOriginalSource a {@link eu.etaxonomy.cdm.model.name.TaxonNameBase taxon name} |
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* can be stored that points to the name used in the source. This is needed because description always belong |
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* to accepted taxa while the referenced citations may use synonym names. |
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* </BR> |
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* The use of "originalNameString" within a DescriptionElementSource has to be discussed. |
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43 |
* In general this string is to be used for different representations of the sourced object. In this classes |
|
44 |
* context it could also stand for the string representation of the taxon name used in the source. This |
|
45 |
* may make sense if the taxon name is not available in the CDM and the user for some reason does not want |
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* to create a new ful {@link eu.etaxonomy.cdm.model.name.TaxonNameBase taxon name}. |
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* |
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* @author a.mueller |
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* @created 18.09.2009 |
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*/ |
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@XmlType(name = "DescriptionElementSource", propOrder = { |
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"sourcedObj", |
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"nameUsedInSource" |
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}) |
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@Entity |
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@Audited |
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public class DescriptionElementSource extends OriginalSourceBase<DescriptionElementBase>{ |
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private static final long serialVersionUID = -8487673428764273806L; |
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@SuppressWarnings("unused") |
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private static final Logger logger = Logger.getLogger(DescriptionElementSource.class); |
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/** |
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* Factory method |
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* @return |
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*/ |
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public static DescriptionElementSource NewInstance(OriginalSourceType type){ |
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return new DescriptionElementSource(type); |
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} |
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public static DescriptionElementSource NewDataImportInstance(String id){ |
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DescriptionElementSource result = new DescriptionElementSource(OriginalSourceType.Import); |
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result.setIdInSource(id); |
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return result; |
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} |
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public static DescriptionElementSource NewDataImportInstance(String id, String idNamespace){ |
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DescriptionElementSource result = NewDataImportInstance(id); |
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result.setIdNamespace(idNamespace); |
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return result; |
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} |
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public static DescriptionElementSource NewDataImportInstance(String id, String idNamespace, Reference ref){ |
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DescriptionElementSource result = NewDataImportInstance(id, idNamespace); |
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result.setCitation(ref); |
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return result; |
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} |
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public static DescriptionElementSource NewInstance(OriginalSourceType type, String id, String idNamespace, Reference citation){ |
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DescriptionElementSource result = NewInstance(type); |
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result.setIdInSource(id); |
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result.setIdNamespace(idNamespace); |
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result.setCitation(citation); |
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return result; |
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} |
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public static DescriptionElementSource NewInstance(OriginalSourceType type, String id, String idNamespace, Reference citation, String microCitation){ |
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DescriptionElementSource result = NewInstance(type, id, idNamespace, citation); |
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result.setCitationMicroReference(microCitation); |
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return result; |
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} |
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public static DescriptionElementSource NewInstance(OriginalSourceType type, String id, String idNamespace, Reference citation, String microReference, TaxonNameBase nameUsedInSource, String originalNameString){ |
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DescriptionElementSource result = NewInstance(type, id, idNamespace, citation, microReference); |
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result.setNameUsedInSource(nameUsedInSource); |
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result.setOriginalNameString(originalNameString); |
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return result; |
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} |
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public static DescriptionElementSource NewPrimarySourceInstance(Reference citation, String microCitation){ |
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DescriptionElementSource result = NewInstance(OriginalSourceType.PrimaryTaxonomicSource); |
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result.setCitation(citation); |
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result.setCitationMicroReference(microCitation); |
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return result; |
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} |
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public static DescriptionElementSource NewPrimarySourceInstance(Reference citation, String microReference, TaxonNameBase nameUsedInSource, String originalNameString){ |
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DescriptionElementSource result = NewPrimarySourceInstance(citation, microReference); |
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result.setNameUsedInSource(nameUsedInSource); |
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result.setOriginalNameString(originalNameString); |
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return result; |
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} |
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//TODO evtl. JoinTable http://www.programcreek.com/java-api-examples/index.php?api=org.hibernate.annotations.AnyMetaDef |
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@XmlElement(name = "SourcedObject") |
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@XmlIDREF |
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@XmlSchemaType(name = "IDREF") |
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@Any(metaDef = "CdmBase", |
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metaColumn=@Column(name = "sourcedObj_type"), |
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fetch = FetchType.LAZY, |
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optional = false) |
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@JoinColumn(name = "sourcedObj_id") |
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@ManyToOne(fetch = FetchType.LAZY) |
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@Cascade({CascadeType.SAVE_UPDATE,CascadeType.MERGE}) |
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@NotAudited |
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private DescriptionElementBase sourcedObj; |
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@XmlElement(name = "nameUsedInSource") |
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@XmlIDREF |
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@XmlSchemaType(name = "IDREF") |
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@ManyToOne(fetch = FetchType.LAZY) |
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@Cascade({CascadeType.SAVE_UPDATE,CascadeType.MERGE}) |
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private TaxonNameBase<?,?> nameUsedInSource; |
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//*********************** CONSTRUCTOR ******************************/ |
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//for hibernate use only |
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private DescriptionElementSource(){ |
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super(); |
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} |
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private DescriptionElementSource(OriginalSourceType type){ |
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super(type); |
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} |
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// ************************** GETTER / SETTER ***************************/ |
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@Override |
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public DescriptionElementBase getSourcedObj() { |
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return sourcedObj; |
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} |
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@Override |
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public void setSourcedObj(DescriptionElementBase sourcedObj) { |
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this.sourcedObj = sourcedObj; |
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} |
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/** |
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* @return the taxonNameUsedInSource |
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*/ |
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public TaxonNameBase getNameUsedInSource() { |
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return nameUsedInSource; |
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} |
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/** |
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* @param nameUsedInReference the nameUsedInReference to set |
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*/ |
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public void setNameUsedInSource(TaxonNameBase nameUsedInSource) { |
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this.nameUsedInSource = nameUsedInSource; |
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} |
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//*********************************** CLONE *********************************************************/ |
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/** |
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* Clones this original source and sets the clones sourced object to 'sourceObj' |
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* @see java.lang.Object#clone() |
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*/ |
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public DescriptionElementSource clone(DescriptionElementBase sourcedObj) throws CloneNotSupportedException{ |
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DescriptionElementSource result = (DescriptionElementSource)clone(); |
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result.setSourcedObj(sourcedObj); |
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return result; |
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} |
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@Override |
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public Object clone() throws CloneNotSupportedException{ |
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DescriptionElementSource result = (DescriptionElementSource)super.clone(); |
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//no changes to: sourcedObj |
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return result; |
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} |
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} |
Also available in: Unified diff
Clean up DescriptionElementSource.java