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// $Id$
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.database.update.v34_35;
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import java.util.ArrayList;
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import java.util.List;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.database.update.ClassBaseTypeUpdater;
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import eu.etaxonomy.cdm.database.update.ColumnAdder;
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import eu.etaxonomy.cdm.database.update.ISchemaUpdater;
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import eu.etaxonomy.cdm.database.update.ISchemaUpdaterStep;
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import eu.etaxonomy.cdm.database.update.SchemaUpdaterBase;
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import eu.etaxonomy.cdm.database.update.SimpleSchemaUpdaterStep;
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import eu.etaxonomy.cdm.database.update.TableCreator;
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import eu.etaxonomy.cdm.database.update.TableDroper;
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import eu.etaxonomy.cdm.database.update.v33_34.SchemaUpdater_34_341;
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import eu.etaxonomy.cdm.database.update.v35_36.SchemaUpdater_35_36;
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import eu.etaxonomy.cdm.model.location.Country;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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/**
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* @author a.mueller
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* @created Mar 01, 2015
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*/
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public class SchemaUpdater_341_35 extends SchemaUpdaterBase {
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(SchemaUpdater_341_35.class);
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private static final String startSchemaVersion = "3.4.1.0.201411210000";
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private static final String endSchemaVersion = "3.5.0.0.201531030000";
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// ********************** FACTORY METHOD *************************************
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public static SchemaUpdater_341_35 NewInstance() {
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return new SchemaUpdater_341_35();
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}
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/**
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* @param startSchemaVersion
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* @param endSchemaVersion
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*/
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protected SchemaUpdater_341_35() {
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super(startSchemaVersion, endSchemaVersion);
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}
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@Override
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protected List<ISchemaUpdaterStep> getUpdaterList() {
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String stepName;
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String tableName;
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ISchemaUpdaterStep step;
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String newColumnName;
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String query;
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String columnNames[];
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String referencedTables[];
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String columnTypes[];
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List<ISchemaUpdaterStep> stepList = new ArrayList<ISchemaUpdaterStep>();
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//IntextReference
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//#4706
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stepName = "Add IntextReference table";
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tableName = "IntextReference";
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columnNames = new String[]{"startpos","endpos","agent_id","annotation_id",
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"languagestring_id","media_id","occurrence_id","reference_id","taxon_id","taxonname_id"};
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referencedTables = new String[]{null, null, "AgentBase","Annotation","LanguageString","Media",
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"SpecimenOrObservationBase","Reference","TaxonBase","TaxonNameBase"};
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columnTypes = new String[]{"int","int","int","int","int","int","int","int","int","int"};
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step = TableCreator.NewVersionableInstance(stepName, tableName, columnNames,
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columnTypes, referencedTables, INCLUDE_AUDIT);
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stepList.add(step);
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//Drop EntityValidationResult and EntityConstraintViolation
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//#4709
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stepName = "Drop EntityConstraintViolation table";
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tableName = "EntityConstraintViolation";
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step = TableDroper.NewInstance(stepName, tableName, !INCLUDE_AUDIT);
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stepList.add(step);
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stepName = "Drop EntityValidationResult table";
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tableName = "EntityValidationResult";
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step = TableDroper.NewInstance(stepName, tableName, !INCLUDE_AUDIT);
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stepList.add(step);
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//... and create new entity validation and
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stepName = "Create EntityValidation table";
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tableName = "EntityValidation";
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columnNames = new String[]{"updated","crudeventtype","userfriendlydescription","userfriendlytypename",
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"validatedentityclass","validatedentityid","validatedentityuuid", "validationcount", "status"};
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columnTypes = new String[]{"datetime","string_255","string_255","string_255","string_255","int","string_36","int","string_20"};
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referencedTables = new String[]{null,null,null,null,null,null,null,null,null};
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step = TableCreator.NewNonVersionableInstance(stepName, tableName, columnNames, columnTypes, referencedTables);
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stepList.add(step);
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//... constraint violation
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stepName = "Create EntityConstraintViolation table";
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tableName = "EntityConstraintViolation";
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columnNames = new String[]{"invalidvalue","message","propertypath","severity","userfriendlyfieldname",
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"validationgroup","validator","entityvalidation_id"};
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columnTypes = new String[]{"string_255","string_255","string_255","string_255","string_255","string_255","string_255","int"};
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referencedTables = new String[]{null,null,null,null,null,null,null,"EntityValidationResult"};
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step = TableCreator.NewNonVersionableInstance(stepName, tableName, columnNames, columnTypes, referencedTables);
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stepList.add(step);
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//Delete orphaned taxon nodes #2341
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stepName = "Delete orhphaned taxon nodes";
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String sql = "DELETE FROM @@TaxonNode@@ WHERE classification_id IS NULL";
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tableName = "TaxonNode";
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step = SimpleSchemaUpdaterStep.NewAuditedInstance(stepName, sql, tableName, 0);
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stepList.add(step);
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//identifier versionable -> annotatable
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stepName = "Upgrade identifier from versionable to annotatable";
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tableName = "Identifier";
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step = ClassBaseTypeUpdater.NewVersionableToAnnotatableInstance(stepName, tableName, INCLUDE_AUDIT);
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stepList.add(step);
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//agent - collector title #4311
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stepName = "Add collector title for TeamOrPersonBase";
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tableName = "AgentBase";
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newColumnName = "collectorTitle";
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step = ColumnAdder.NewStringInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT);
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stepList.add(step);
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//agent - collector title #4311
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stepName = "Add protectedCollectorTitleCache to Team";
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tableName = "AgentBase";
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newColumnName = "protectedCollectorTitleCache";
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step = ColumnAdder.NewBooleanInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT, false);
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stepList.add(step);
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//update DerivationEvent.taxonname_id #4578, #3448, #4203, #4518
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stepName = "Update taxon name in derivation event";
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query = "UPDATE DeterminationEvent " +
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" SET taxonname_id = (SELECT name_id FROM TaxonBase tb WHERE tb.id = taxon_id) " +
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" WHERE taxon_id IS NOT NULL ";
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tableName = "DeterminationEvent";
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step = SimpleSchemaUpdaterStep.NewAuditedInstance(stepName, query, "", -99);
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stepList.add(step);
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//#4110 update idInVocabulary for some new databases
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updateAreas(stepList);
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return stepList;
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}
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//#4110 update idInVocabulary for some new databases
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private void updateAreas(List<ISchemaUpdaterStep> stepList) {
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String stepName;
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String uuid;
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ISchemaUpdaterStep step;
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String tableName = "DefinedTermBase";
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//ANSI - SQL
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String queryVocUuid = " UPDATE @@DefinedTermBase@@ "
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+ " SET idInVocabulary = " +
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" (SELECT abbreviatedlabel "
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+ " FROM @@DefinedTermBase_Representation@@ MN "
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+ " INNER JOIN @@Representation@@ r ON r.id = MN.representations_id "
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+ " WHERE MN.DefinedTermBase_id = @@DefinedTermBase@@.id) "
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+ " WHERE idInVocabulary IS NULL AND EXISTS (SELECT * FROM @@TermVocabulary@@ voc WHERE voc.id = @@DefinedTermBase@@.vocabulary_id " +
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" AND voc.uuid = '%s') ";
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// Country => all
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stepName = "Update idInVocabulary for Countries if necessary";
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uuid = Country.uuidCountryVocabulary.toString();
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step = SimpleSchemaUpdaterStep.NewNonAuditedInstance(stepName,
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String.format(queryVocUuid, uuid), 99)
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.setDefaultAuditing(tableName);
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stepList.add(step);
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// TdwgAreas => all
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stepName = "Update idInVocabulary for TDWG areas if necessary";
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uuid = NamedArea.uuidTdwgAreaVocabulary.toString();
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step = SimpleSchemaUpdaterStep.NewNonAuditedInstance(stepName,
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String.format(queryVocUuid, uuid), 99)
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.setDefaultAuditing(tableName);
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stepList.add(step);
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// Waterbody => all
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stepName = "Update idInVocabulary for Waterbody if necessary";
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uuid = NamedArea.uuidWaterbodyVocabulary.toString();
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step = SimpleSchemaUpdaterStep.NewNonAuditedInstance(stepName,
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String.format(queryVocUuid, uuid), 99)
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.setDefaultAuditing(tableName);
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stepList.add(step);
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// Continent => None has an id
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}
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@Override
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public ISchemaUpdater getNextUpdater() {
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return SchemaUpdater_35_36.NewInstance();
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}
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@Override
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public ISchemaUpdater getPreviousUpdater() {
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return SchemaUpdater_34_341.NewInstance();
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}
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}
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