|
1
|
/**
|
|
2
|
* Copyright (C) 2011 EDIT
|
|
3
|
* European Distributed Institute of Taxonomy
|
|
4
|
* http://www.e-taxonomy.eu
|
|
5
|
*
|
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
|
8
|
*/
|
|
9
|
package eu.etaxonomy.cdm.api.service;
|
|
10
|
|
|
11
|
import java.util.ArrayList;
|
|
12
|
import java.util.Collections;
|
|
13
|
|
|
14
|
import org.apache.log4j.Logger;
|
|
15
|
import org.junit.Assert;
|
|
16
|
import org.junit.Ignore;
|
|
17
|
import org.junit.Test;
|
|
18
|
|
|
19
|
import eu.etaxonomy.cdm.compare.taxon.TaxonNodeNaturalComparator;
|
|
20
|
import eu.etaxonomy.cdm.compare.taxon.TaxonNodeByNameComparator;
|
|
21
|
import eu.etaxonomy.cdm.model.name.IBotanicalName;
|
|
22
|
import eu.etaxonomy.cdm.model.name.Rank;
|
|
23
|
import eu.etaxonomy.cdm.model.name.TaxonNameFactory;
|
|
24
|
import eu.etaxonomy.cdm.model.reference.Reference;
|
|
25
|
import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
|
|
26
|
import eu.etaxonomy.cdm.model.taxon.Classification;
|
|
27
|
import eu.etaxonomy.cdm.model.taxon.Taxon;
|
|
28
|
import eu.etaxonomy.cdm.model.taxon.TaxonNode;
|
|
29
|
import eu.etaxonomy.cdm.persistence.dto.TaxonNodeDto;
|
|
30
|
import eu.etaxonomy.cdm.persistence.dto.TaxonNodeDtoByNameComparator;
|
|
31
|
|
|
32
|
/**
|
|
33
|
* @author a.kohlbecker
|
|
34
|
* @since 18.07.2011
|
|
35
|
*/
|
|
36
|
public class TaxonNodeDtoByNameComparatorTest {
|
|
37
|
|
|
38
|
private static final Logger logger = Logger.getLogger(TaxonNodeDtoByNameComparatorTest.class);
|
|
39
|
|
|
40
|
@Test
|
|
41
|
@Ignore
|
|
42
|
public void testCompare() {
|
|
43
|
Classification classification = Classification.NewInstance("Greuther, 1993");
|
|
44
|
|
|
45
|
Reference sec = ReferenceFactory.newBook();
|
|
46
|
|
|
47
|
IBotanicalName botname_1 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
48
|
String nameCache_1 = "Epilobium \u00D7aschersonianum Hausskn.";
|
|
49
|
botname_1.setNameCache(nameCache_1, true);
|
|
50
|
Taxon taxon_1 = Taxon.NewInstance(botname_1, sec);
|
|
51
|
|
|
52
|
IBotanicalName botname_2 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
53
|
String nameCache_2 = "\u00D7Epilobium \u00D7angustifolium";
|
|
54
|
botname_2.setNameCache(nameCache_2, true);
|
|
55
|
Taxon taxon_2 = Taxon.NewInstance(botname_2, sec);
|
|
56
|
|
|
57
|
IBotanicalName botname_3 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
58
|
String nameCache_3 = "Epilobium lamyi";
|
|
59
|
botname_3.setNameCache(nameCache_3, true);
|
|
60
|
Taxon taxon_3 = Taxon.NewInstance(botname_3, sec);
|
|
61
|
|
|
62
|
IBotanicalName botname_4 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
63
|
String nameCache_4 = "Epilobium tournefortii";
|
|
64
|
botname_4.setNameCache(nameCache_4, true);
|
|
65
|
Taxon taxon_4 = Taxon.NewInstance(botname_4, sec);
|
|
66
|
|
|
67
|
classification.addChildTaxon(taxon_1, sec, null);
|
|
68
|
classification.addChildTaxon(taxon_2, sec, null);
|
|
69
|
classification.addChildTaxon(taxon_3, sec, null);
|
|
70
|
classification.addChildTaxon(taxon_4, sec, null);
|
|
71
|
|
|
72
|
classification.getChildNodes();
|
|
73
|
ArrayList<TaxonNode> taxonNodes = new ArrayList<TaxonNode>();
|
|
74
|
taxonNodes.addAll(classification.getChildNodes());
|
|
75
|
|
|
76
|
// order using default settings
|
|
77
|
TaxonNodeByNameComparator taxonNodeByNameComparator = new TaxonNodeByNameComparator();
|
|
78
|
|
|
79
|
// Collections.sort(taxonNodes, taxonNodeByNameComparator);
|
|
80
|
int i = 0;
|
|
81
|
logger.debug("order using default settings");
|
|
82
|
logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
|
|
83
|
Assert.assertEquals(nameCache_2, taxonNodes.get(i++).getTaxon().getName().getNameCache());
|
|
84
|
logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
|
|
85
|
Assert.assertEquals(nameCache_1, taxonNodes.get(i++).getTaxon().getName().getNameCache());
|
|
86
|
logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
|
|
87
|
Assert.assertEquals(nameCache_3, taxonNodes.get(i++).getTaxon().getName().getNameCache());
|
|
88
|
logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
|
|
89
|
Assert.assertEquals(nameCache_4, taxonNodes.get(i++).getTaxon().getName().getNameCache());
|
|
90
|
|
|
91
|
// order without ignoring hybrid signs
|
|
92
|
taxonNodeByNameComparator.setIgnoreHybridSign(false);
|
|
93
|
|
|
94
|
Collections.sort(taxonNodes, taxonNodeByNameComparator);
|
|
95
|
|
|
96
|
i = 0;
|
|
97
|
logger.debug("order without ignoring hybrid signs");
|
|
98
|
logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
|
|
99
|
Assert.assertEquals(nameCache_3, taxonNodes.get(i++).getTaxon().getName().getNameCache());
|
|
100
|
logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
|
|
101
|
Assert.assertEquals(nameCache_4, taxonNodes.get(i++).getTaxon().getName().getNameCache());
|
|
102
|
logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
|
|
103
|
Assert.assertEquals(nameCache_1, taxonNodes.get(i++).getTaxon().getName().getNameCache());
|
|
104
|
logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
|
|
105
|
Assert.assertEquals(nameCache_2, taxonNodes.get(i++).getTaxon().getName().getNameCache());
|
|
106
|
|
|
107
|
}
|
|
108
|
|
|
109
|
@Test
|
|
110
|
public void testNullSave() {
|
|
111
|
Classification classification = Classification.NewInstance("Greuther, 1993");
|
|
112
|
|
|
113
|
Reference sec = ReferenceFactory.newBook();
|
|
114
|
|
|
115
|
IBotanicalName botname_1 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
116
|
String nameCache_1 = "Epilobium \u00D7aschersonianum Hausskn.";
|
|
117
|
botname_1.setNameCache(nameCache_1, true);
|
|
118
|
Taxon taxon_1 = Taxon.NewInstance(botname_1, sec);
|
|
119
|
|
|
120
|
IBotanicalName botname_2 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
121
|
String nameCache_2 = "\u00D7Epilobium \u00D7angustifolium";
|
|
122
|
botname_2.setNameCache(nameCache_2, true);
|
|
123
|
Taxon taxon_2 = Taxon.NewInstance(botname_2, sec);
|
|
124
|
|
|
125
|
TaxonNodeDto node1 = new TaxonNodeDto(classification.addChildTaxon(taxon_1, sec, null));
|
|
126
|
TaxonNodeDto node2 = new TaxonNodeDto(classification.addChildTaxon(taxon_2, sec, null));
|
|
127
|
|
|
128
|
TaxonNodeDtoByNameComparator taxonNodeByNameComparator = new TaxonNodeDtoByNameComparator();
|
|
129
|
|
|
130
|
Assert.assertEquals(0, taxonNodeByNameComparator.compare(null, null));
|
|
131
|
Assert.assertEquals(-1, taxonNodeByNameComparator.compare(node1, null));
|
|
132
|
Assert.assertEquals(1, taxonNodeByNameComparator.compare(null, node1));
|
|
133
|
|
|
134
|
}
|
|
135
|
|
|
136
|
@Test
|
|
137
|
@Ignore
|
|
138
|
public void testCompareNaturalOrder() {
|
|
139
|
Classification classification = Classification.NewInstance("Greuther, 1993");
|
|
140
|
|
|
141
|
Reference sec = ReferenceFactory.newBook();
|
|
142
|
|
|
143
|
IBotanicalName botname_1 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
144
|
String nameCache_1 = "Epilobium \u00D7aschersonianum Hausskn.";
|
|
145
|
botname_1.setNameCache(nameCache_1, true);
|
|
146
|
Taxon taxon_1 = Taxon.NewInstance(botname_1, sec);
|
|
147
|
|
|
148
|
IBotanicalName botname_2 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
149
|
String nameCache_2 = "\u00D7Epilobium \u00D7angustifolium";
|
|
150
|
botname_2.setNameCache(nameCache_2, true);
|
|
151
|
Taxon taxon_2 = Taxon.NewInstance(botname_2, sec);
|
|
152
|
|
|
153
|
IBotanicalName botname_3 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
154
|
String nameCache_3 = "Epilobium lamyi";
|
|
155
|
botname_3.setNameCache(nameCache_3, true);
|
|
156
|
Taxon taxon_3 = Taxon.NewInstance(botname_3, sec);
|
|
157
|
|
|
158
|
IBotanicalName botname_4 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
159
|
String nameCache_4 = "Epilobium tournefortii";
|
|
160
|
botname_4.setNameCache(nameCache_4, true);
|
|
161
|
Taxon taxon_4 = Taxon.NewInstance(botname_4, sec);
|
|
162
|
|
|
163
|
IBotanicalName botname_5 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
164
|
String nameCache_5= "Epilobium hirsutum L.";
|
|
165
|
botname_5.setNameCache(nameCache_5, true);
|
|
166
|
Taxon taxon_5 = Taxon.NewInstance(botname_5, sec);
|
|
167
|
|
|
168
|
TaxonNode node1 = classification.addChildTaxon(taxon_1, sec, null);
|
|
169
|
node1.addChildTaxon(taxon_2, sec, null);
|
|
170
|
TaxonNode node2 = classification.addChildTaxon(taxon_3, sec, null);
|
|
171
|
node2.addChildTaxon(taxon_4, sec, null);
|
|
172
|
|
|
173
|
classification.getChildNodes();
|
|
174
|
|
|
175
|
ArrayList<TaxonNode> taxonNodes = new ArrayList<TaxonNode>();
|
|
176
|
taxonNodes.addAll(classification.getChildNodes());
|
|
177
|
|
|
178
|
// order using default settings
|
|
179
|
TaxonNodeNaturalComparator taxonNodeComparator = new TaxonNodeNaturalComparator();
|
|
180
|
// Collections.sort(taxonNodes, taxonNodeComparator);
|
|
181
|
|
|
182
|
int i = 0;
|
|
183
|
logger.debug("order using default settings");
|
|
184
|
logger.debug(taxonNodes.get(i).getTaxon().getName().getNameCache());
|
|
185
|
Assert.assertEquals(nameCache_1, taxonNodes.get(i).getTaxon().getName().getNameCache());
|
|
186
|
logger.debug(taxonNodes.get(i++).getTaxon().getName().getNameCache());
|
|
187
|
Assert.assertEquals(nameCache_2, taxonNodes.get(i).getTaxon().getName().getNameCache());
|
|
188
|
logger.debug(taxonNodes.get(i++).getTaxon().getName().getNameCache());
|
|
189
|
Assert.assertEquals(nameCache_3, taxonNodes.get(i).getTaxon().getName().getNameCache());
|
|
190
|
logger.debug(taxonNodes.get(i++).getTaxon().getName().getNameCache());
|
|
191
|
Assert.assertEquals(nameCache_4, taxonNodes.get(i).getTaxon().getName().getNameCache());
|
|
192
|
|
|
193
|
TaxonNode result = classification.addChildTaxon(taxon_5, 2, null, null);
|
|
194
|
Assert.assertTrue(result.getSortIndex() == 2);
|
|
195
|
|
|
196
|
i = 0;
|
|
197
|
|
|
198
|
logger.debug(classification.getChildNodes().get(i).getTaxon().getName().getNameCache());
|
|
199
|
Assert.assertEquals(nameCache_1, classification.getChildNodes().get(i).getTaxon().getName().getNameCache());
|
|
200
|
logger.debug(classification.getChildNodes().get(i++).getTaxon().getName().getNameCache());
|
|
201
|
Assert.assertEquals(nameCache_2, classification.getChildNodes().get(i).getTaxon().getName().getNameCache());
|
|
202
|
logger.debug(classification.getChildNodes().get(i++).getTaxon().getName().getNameCache());
|
|
203
|
Assert.assertEquals(nameCache_5, classification.getChildNodes().get(i).getTaxon().getName().getNameCache());
|
|
204
|
logger.debug(classification.getChildNodes().get(i++).getTaxon().getName().getNameCache());
|
|
205
|
Assert.assertEquals(nameCache_3, classification.getChildNodes().get(i).getTaxon().getName().getNameCache());
|
|
206
|
|
|
207
|
}
|
|
208
|
}
|