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/**
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* Copyright (C) 2009 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.markup;
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import java.net.MalformedURLException;
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import java.util.UUID;
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import javax.xml.stream.FactoryConfigurationError;
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import javax.xml.stream.XMLEventReader;
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import javax.xml.stream.XMLStreamException;
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import javax.xml.stream.events.XMLEvent;
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import org.apache.log4j.Logger;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.stereotype.Component;
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import org.springframework.transaction.TransactionStatus;
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import eu.etaxonomy.cdm.ext.geo.IEditGeoService;
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import eu.etaxonomy.cdm.io.common.ICdmIO;
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import eu.etaxonomy.cdm.io.common.XmlImportBase;
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import eu.etaxonomy.cdm.model.common.AnnotationType;
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import eu.etaxonomy.cdm.model.common.DefinedTerm;
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import eu.etaxonomy.cdm.model.common.ExtensionType;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.MarkerType;
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import eu.etaxonomy.cdm.model.common.TermVocabulary;
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import eu.etaxonomy.cdm.model.description.DescriptionBase;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
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import eu.etaxonomy.cdm.model.description.TextData;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.location.NamedAreaLevel;
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import eu.etaxonomy.cdm.model.location.NamedAreaType;
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import eu.etaxonomy.cdm.model.media.Media;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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/**
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* @author a.mueller
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*
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*/
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@Component
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public class MarkupDocumentImport
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extends XmlImportBase<MarkupImportConfigurator, MarkupImportState>
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implements ICdmIO<MarkupImportState> {
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private static final long serialVersionUID = -961438861319456892L;
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(MarkupDocumentImport.class);
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// TODO make part of state, but state is renewed when invoking the import a
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// second time
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private UnmatchedLeads unmatchedLeads;
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@Autowired
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private IEditGeoService editGeoService;
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public MarkupDocumentImport() {
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super();
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}
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@Override
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public boolean doCheck(MarkupImportState state) {
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state.setCheck(true);
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doInvoke(state);
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state.setCheck(false);
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return state.isSuccess();
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}
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@Override
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public void doInvoke(MarkupImportState state) {
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fireProgressEvent("Start import markup document", "Before start of document");
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TransactionStatus tx = startTransaction();
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// FIXME reset state
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doAllTheOldOtherStuff(state);
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// START
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try {
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// StAX
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XMLEventReader reader = getStaxReader(state);
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state.setReader(reader);
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// start document
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if (!validateStartOfDocument(reader)) {
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state.setUnsuccessfull();
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return;
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}
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MarkupDocumentImportNoComponent x = new MarkupDocumentImportNoComponent(this);
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x.doInvoke(state);
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commitTransaction(tx);
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// //SAX
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// ImportHandlerBase handler= new PublicationHandler(this);
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// parseSAX(state, handler);
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} catch (FactoryConfigurationError e1) {
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fireWarningEvent("Some error occurred while setting up xml factory. Data can't be imported", "Start", 16);
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state.setUnsuccessfull();
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} catch (XMLStreamException e1) {
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fireWarningEvent("An XMLStreamException occurred while parsing. Data can't be imported", "Start", 16);
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state.setUnsuccessfull();
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}
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return;
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}
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/**
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* This comes from the old version, needs to be checked on need
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*
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* @param state
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*/
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private void doAllTheOldOtherStuff(MarkupImportState state) {
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state.putTree(null, null);
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if (unmatchedLeads == null) {
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unmatchedLeads = UnmatchedLeads.NewInstance();
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}
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state.setUnmatchedLeads(unmatchedLeads);
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// TransactionStatus tx = startTransaction();
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unmatchedLeads.saveToSession(getPolytomousKeyNodeService());
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// TODO generally do not store the reference object in the config
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Reference sourceReference = state.getConfig().getSourceReference();
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getReferenceService().saveOrUpdate(sourceReference);
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}
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/*
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* (non-Javadoc)
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*
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* @see
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* eu.etaxonomy.cdm.io.common.CdmIoBase#isIgnore(eu.etaxonomy.cdm.io.common
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* .IImportConfigurator)
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*/
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@Override
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protected boolean isIgnore(MarkupImportState state) {
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return !state.getConfig().isDoTaxa();
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}
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// ************************* OPEN AFTER REFACTORING ****************************************/
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.CdmIoBase#fireWarningEvent(java.lang.String, java.lang.String, java.lang.Integer)
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*/
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@Override
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public void fireWarningEvent(String message, String dataLocation, Integer severity) {
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super.fireWarningEvent(message, dataLocation, severity, 1);
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}
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@Override
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public void fireWarningEvent(String message, String dataLocation, Integer severity, int stackDepth) {
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super.fireWarningEvent(message, dataLocation, severity, stackDepth + 1);
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}
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@Override
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public void fireSchemaConflictEventExpectedStartTag(String elName, XMLEventReader reader) throws XMLStreamException {
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super.fireSchemaConflictEventExpectedStartTag(elName, reader);
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}
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// ************************* END Events ************************************************************
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@Override
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public boolean isStartingElement(XMLEvent event, String elName) throws XMLStreamException {
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return super.isStartingElement(event, elName);
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}
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@Override
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public boolean isEndingElement(XMLEvent event, String elName) throws XMLStreamException {
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return super.isEndingElement(event, elName);
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}
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@Override
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public void fillMissingEpithetsForTaxa(Taxon parentTaxon, Taxon childTaxon) {
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super.fillMissingEpithetsForTaxa(parentTaxon, childTaxon);
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}
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@Override
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public Feature getFeature(MarkupImportState state, UUID uuid, String label, String text, String labelAbbrev, TermVocabulary<Feature> voc){
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return super.getFeature(state, uuid, label, text, labelAbbrev, voc);
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}
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@Override
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public PresenceAbsenceTerm getPresenceTerm(MarkupImportState state, UUID uuid, String label, String text, String labelAbbrev, boolean isAbsenceTerm, TermVocabulary<PresenceAbsenceTerm> voc){
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return super.getPresenceTerm(state, uuid, label, text, labelAbbrev, isAbsenceTerm, voc);
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}
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@Override
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public ExtensionType getExtensionType(MarkupImportState state, UUID uuid, String label, String text, String labelAbbrev){
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return super.getExtensionType(state, uuid, label, text, labelAbbrev);
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}
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public DefinedTerm getIdentifierType(MarkupImportState state, UUID uuid, String label, String text, String labelAbbrev, TermVocabulary<DefinedTerm> voc){
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return super.getIdentiferType(state, uuid, label, text, labelAbbrev, voc);
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}
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@Override
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public AnnotationType getAnnotationType(MarkupImportState state, UUID uuid, String label, String text, String labelAbbrev, TermVocabulary<AnnotationType> voc){
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return super.getAnnotationType(state, uuid, label, text, labelAbbrev, voc);
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}
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@Override
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public MarkerType getMarkerType(MarkupImportState state, UUID uuid, String label, String text, String labelAbbrev, TermVocabulary<MarkerType> voc){
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return super.getMarkerType(state, uuid, label, text, labelAbbrev, voc);
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}
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@Override
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public TextData getFeaturePlaceholder(MarkupImportState state, DescriptionBase<?> description, Feature feature, boolean createIfNotExists) {
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return super.getFeaturePlaceholder(state, description, feature, createIfNotExists);
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}
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@Override
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public NamedAreaLevel getNamedAreaLevel(MarkupImportState state, UUID uuid, String label, String text, String labelAbbrev, TermVocabulary<NamedAreaLevel> voc){
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return super.getNamedAreaLevel(state, uuid, label, text, labelAbbrev, voc);
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}
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@Override
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public NamedArea getNamedArea(MarkupImportState state, UUID uuid, String label, String text, String labelAbbrev, NamedAreaType areaType, NamedAreaLevel level, TermVocabulary voc, TermMatchMode matchMode){
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return super.getNamedArea(state, uuid, label, text, labelAbbrev, areaType, level, voc, matchMode);
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}
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@Override
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public Language getLanguage(MarkupImportState state, UUID uuid, String label, String text, String labelAbbrev, TermVocabulary voc){
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return super.getLanguage(state, uuid, label, text, labelAbbrev, voc);
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}
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public boolean getReadMediaData(){
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return this.READ_MEDIA_DATA;
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}
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@Override
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public Media getImageMedia(String uriString, boolean readMediaData) throws MalformedURLException {
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return super.getImageMedia(uriString, readMediaData);
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}
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public IEditGeoService getEditGeoService() {
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return editGeoService;
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}
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}
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