/cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/excel/in/SpecimenRow.java - Diff - EDIT - EDIT Project Management

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Revision 531fc7bc

Added by Andreas Müller almost 8 years ago

ID 531fc7bc903553cc55dd137fa3ce809b0ede58fa
Parent 90046bc4
Child c81db8d5

Remove generics from Reference in cdmlib (except for cdmlib-model) #5830

cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/excel/in/SpecimenRow.java
1	1	/**
2	2	* Copyright (C) 2009 EDIT
3		* European Distributed Institute of Taxonomy
	3	* European Distributed Institute of Taxonomy
4	4	* http://www.e-taxonomy.eu
5		*
	5	*
6	6	* The contents of this file are subject to the Mozilla Public License Version 1.1
7	7	* See LICENSE.TXT at the top of this package for the full license terms.
8	8	*/
...	...
55	55
56	56	private String accessionNumber;
57	57	private String barcode;
58
	58
59	59	// private String author;
60	60
61	61	// private String family;
...	...
63	63	// private String specificEpithet;
64	64	private String collectionCode;
65	65	private String collection;
66
67
	66
	67
68	68	private TreeMap<Integer, IdentifiableSource> sources = new TreeMap<Integer, IdentifiableSource>();
69	69	private TreeMap<Integer, String> collectors = new TreeMap<Integer, String>();
70	70	private TreeMap<Integer, String> unitNotes = new TreeMap<Integer, String>();
71	71	private TreeMap<Integer, SpecimenTypeDesignation> types = new TreeMap<Integer, SpecimenTypeDesignation>();
72	72	private TreeMap<Integer, DeterminationLight> determinations = new TreeMap<Integer, DeterminationLight>();
73		private List<PostfixTerm> levels = new ArrayList<PostfixTerm>();
74
	73	private List<PostfixTerm> levels = new ArrayList<PostfixTerm>();
	74
	75
75	76
76
77	77	public SpecimenRow() {
78	78	}
79
80	79
81
	80
	81
82	82	// may be public if necessary
83	83	protected class DeterminationLight{
84	84	String taxonUuid;
...	...
93	93	String determinedBy;
94	94	String determinedWhen;
95	95	String notes;
96
	96
97	97	public boolean hasTaxonInformation() {
98		boolean result = StringUtils.isNotBlank(taxonUuid)
99		\|\| StringUtils.isNotBlank(family)
	98	boolean result = StringUtils.isNotBlank(taxonUuid)
	99	\|\| StringUtils.isNotBlank(family)
100	100	\|\| StringUtils.isNotBlank(genus)
101	101	\|\| StringUtils.isNotBlank(rank)
102	102	\|\| StringUtils.isNotBlank(fullName)
...	...
107	107	}
108	108
109	109	}
110
111
112		// ************************** GETTER / SETTER *******************************/
113
	110
	111
	112	// ************************** GETTER / SETTER *******************************/
	113
114	114	public void setBasisOfRecord(String basisOfRecord) {
115	115	this.basisOfRecord = basisOfRecord;
116	116	}
...	...
174	174	public void setBarcode(String barcode) {
175	175	this.barcode = barcode;
176	176	}
177		//
	177	//
178	178	// /**
179	179	// * @return the author
180	180	// */
...	...
311	311	}
312	312
313	313
314		public void putIdInSource(int key, String id){
	314	@Override
	315	public void putIdInSource(int key, String id){
315	316	IdentifiableSource source = getOrMakeSource(key, OriginalSourceType.Import);
316	317	source.setIdInSource(id);
317	318	}
318		public void putSourceReference(int key, Reference<?> reference){
	319	@Override
	320	public void putSourceReference(int key, Reference reference){
319	321	IdentifiableSource source = getOrMakeSource(key, OriginalSourceType.Unknown);
320	322	source.setCitation(reference);
321	323	}
322	324
323		public List<IdentifiableSource> getSources() {
	325	@Override
	326	public List<IdentifiableSource> getSources() {
324	327	return getOrdered(sources);
325	328	}
326	329
...	...
347	350	}
348	351	}
349	352	}
350
	353
351	354	public void putCollector(int key, String collector){
352	355	this.collectors.put(key, collector);
353	356	}
...	...
355	358	public List<String> getCollectors() {
356	359	return getOrdered(collectors);
357	360	}
358
	361
359	362	public void putUnitNote(int key, String unitNote){
360	363	this.unitNotes.put(key, unitNote);
361	364	}
...	...
363	366	public List<String> getUnitNotes() {
364	367	return getOrdered(unitNotes);
365	368	}
366
367
368
	369
	370
	371
369	372	/**
370	373	* @param key
371	374	* @return
...	...
378	381	}
379	382	return source;
380	383	}
381
382	384
383		public void putTypeCategory(int key, SpecimenTypeDesignationStatus status){
	385
	386	@Override
	387	public void putTypeCategory(int key, SpecimenTypeDesignationStatus status){
384	388	SpecimenTypeDesignation designation = getOrMakeTypeDesignation(key);
385	389	designation.setTypeStatus(status);
386	390	}
387		public void putTypifiedName(int key, TaxonNameBase<?,?> name){
	391	@Override
	392	public void putTypifiedName(int key, TaxonNameBase<?,?> name){
388	393	if (name != null){
389	394	SpecimenTypeDesignation designation = getOrMakeTypeDesignation(key);
390	395	name.addTypeDesignation(designation, false);
391	396	}
392	397	}
393	398
394		public List<SpecimenTypeDesignation> getTypeDesignations() {
	399	@Override
	400	public List<SpecimenTypeDesignation> getTypeDesignations() {
395	401	return getOrdered(types);
396	402	}
397	403
...	...
404	410	}
405	411	return designation;
406	412	}
407
	413
408	414	public void putDeterminationFamily(int key, String family){
409	415	DeterminationLight determinationEvent = getOrMakeDetermination(key);
410	416	determinationEvent.family = family;
...	...
414	420	DeterminationLight determinationEvent = getOrMakeDetermination(key);
415	421	determinationEvent.fullName = fullName;
416	422	}
417
	423
418	424	public void putDeterminationTaxonUuid(int key, String taxonUuid){
419	425	DeterminationLight determinationEvent = getOrMakeDetermination(key);
420	426	determinationEvent.taxonUuid = taxonUuid;
...	...
429	435	DeterminationLight determinationEvent = getOrMakeDetermination(key);
430	436	determinationEvent.genus = genus;
431	437	}
432
	438
433	439	public void putDeterminationSpeciesEpi(int key, String speciesEpi){
434	440	DeterminationLight determinationEvent = getOrMakeDetermination(key);
435	441	determinationEvent.speciesEpi = speciesEpi;
...	...
459	465	DeterminationLight determinationEvent = getOrMakeDetermination(key);
460	466	determinationEvent.notes = notes;
461	467	}
462
	468
463	469	public void putDeterminationDeterminationModifier(int key, String modifier){
464	470	DeterminationLight determinationEvent = getOrMakeDetermination(key);
465	471	determinationEvent.modifier = modifier;
466	472	}
467
468
	473
	474
469	475	public List<DeterminationLight> getDetermination() {
470	476	List<DeterminationLight> result = getOrdered(determinations);
471	477	if (determinations.size() > 1 && getCommonDetermination()!= null ){
...	...
473	479	}
474	480	return result;
475	481	}
476
	482
477	483	/**
478	484	* Returns the determination with key "0".
479	485	* @return
...	...
484	490	}
485	491	return null;
486	492	}
487
488
489
	493
	494
	495
490	496	private DeterminationLight getOrMakeDetermination(int key) {
491	497	DeterminationLight determination = this.determinations.get(key);
492	498	if (determination == null){
...	...
495	501	}
496	502	return determination;
497	503	}
498
	504
499	505
500	506	private<T extends Object> List<T> getOrdered(TreeMap<?, T> tree) {
501	507	List<T> result = new ArrayList<T>();
...	...
504	510	}
505	511	return result;
506	512	}
507
	513
508	514	public void setSex(String sex) {
509	515	this.sex = sex;
510	516	}
...	...
563	569	area.postfix = levelPostfix;
564	570	this.levels.add(area);
565	571	}
566
	572
567	573	public List<PostfixTerm> getLeveledAreas(){
568	574	return levels;
569	575	}
570
	576
571	577	public void setAltitudeMax(String altitudeMax) {
572	578	this.altitudeMax = altitudeMax;
573	579	}
...	...
602	608	public void setLanguage(String language) {
603	609	this.language = language;
604	610	}
605
	611
606	612	}

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Revision 531fc7bc

Added by Andreas Müller almost 8 years ago