Revision 531fc7bc
Added by Andreas Müller almost 8 years ago
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/dwca/in/DwcTaxonStreamItem2CdmTaxonConverter.java | ||
|---|---|---|
| 120 | 120 |
List<MappedCdmBase> resultList = new ArrayList<MappedCdmBase>(); |
| 121 | 121 |
|
| 122 | 122 |
//TODO what if not transactional? |
| 123 |
Reference<?> sourceReference = state.getTransactionalSourceReference();
|
|
| 123 |
Reference sourceReference = state.getTransactionalSourceReference(); |
|
| 124 | 124 |
String sourceReferenceDetail = null; |
| 125 | 125 |
|
| 126 | 126 |
//taxon |
| ... | ... | |
| 253 | 253 |
String idNamespace = item.get(TermUri.CDM_SOURCE_IDNAMESPACE); |
| 254 | 254 |
String reference = item.get(TermUri.CDM_SOURCE_REFERENCE); |
| 255 | 255 |
if(StringUtils.isNotBlank(id) && StringUtils.isNotBlank(idNamespace) && StringUtils.isNotBlank(reference)){
|
| 256 |
Reference<?> ref = ReferenceFactory.newGeneric();
|
|
| 256 |
Reference ref = ReferenceFactory.newGeneric(); |
|
| 257 | 257 |
ref.setTitle(reference); |
| 258 | 258 |
Taxon taxon = (Taxon) taxonBase; |
| 259 | 259 |
taxon.addSource(OriginalSourceType.Import, id, idNamespace, ref, null); |
| ... | ... | |
| 394 | 394 |
} |
| 395 | 395 |
|
| 396 | 396 |
|
| 397 |
private void handleDataset(StreamItem item, TaxonBase<?> taxonBase, List<MappedCdmBase> resultList, Reference<?> sourceReference, String sourceReferecenDetail) {
|
|
| 397 |
private void handleDataset(StreamItem item, TaxonBase<?> taxonBase, List<MappedCdmBase> resultList, Reference sourceReference, String sourceReferecenDetail) {
|
|
| 398 | 398 |
TermUri idTerm = TermUri.DWC_DATASET_ID; |
| 399 | 399 |
TermUri strTerm = TermUri.DWC_DATASET_NAME; |
| 400 | 400 |
|
| ... | ... | |
| 436 | 436 |
}else if (config.isDatasetsAsSecundumReference() || config.isDatasetsAsOriginalSource()){
|
| 437 | 437 |
MappedCdmBase<Reference> mappedCitation = getReference(item, resultList, idTerm, strTerm, true); |
| 438 | 438 |
if (mappedCitation != null){
|
| 439 |
Reference<?> ref = mappedCitation.getCdmBase();
|
|
| 439 |
Reference ref = mappedCitation.getCdmBase(); |
|
| 440 | 440 |
if (config.isDatasetsAsSecundumReference()){
|
| 441 | 441 |
//dataset as secundum reference |
| 442 | 442 |
taxonBase.setSec(ref); |
| ... | ... | |
| 573 | 573 |
* @return |
| 574 | 574 |
*/ |
| 575 | 575 |
private MappedCdmBase<Reference> getReference(StreamItem item, List<MappedCdmBase> resultList, TermUri idTerm, TermUri strTerm, boolean idIsInternal) {
|
| 576 |
Reference<?> newRef = null;
|
|
| 577 |
Reference<?> sourceCitation = null;
|
|
| 576 |
Reference newRef = null; |
|
| 577 |
Reference sourceCitation = null; |
|
| 578 | 578 |
|
| 579 | 579 |
MappedCdmBase<Reference> result = null; |
| 580 | 580 |
if (exists(idTerm, item) || exists(strTerm, item)){
|
| ... | ... | |
| 692 | 692 |
*/ |
| 693 | 693 |
private TaxonBase<?> getTaxonBase(StreamItem item) {
|
| 694 | 694 |
TaxonNameBase<?,?> name = null; |
| 695 |
Reference<?> sec = null;
|
|
| 695 |
Reference sec = null; |
|
| 696 | 696 |
TaxonBase<?> result; |
| 697 | 697 |
String taxStatus = item.get(TermUri.DWC_TAXONOMIC_STATUS); |
| 698 | 698 |
String status = ""; |
Also available in: Unified diff
Remove generics from Reference in cdmlib (except for cdmlib-model) #5830