1
|
/**
|
2
|
* Copyright (C) 2007 EDIT
|
3
|
* European Distributed Institute of Taxonomy
|
4
|
* http://www.e-taxonomy.eu
|
5
|
*
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
8
|
*/
|
9
|
|
10
|
package eu.etaxonomy.cdm.io.specimen.excel.in;
|
11
|
|
12
|
import java.util.HashMap;
|
13
|
import java.util.Set;
|
14
|
import java.util.UUID;
|
15
|
|
16
|
import org.apache.commons.lang.StringUtils;
|
17
|
import org.apache.log4j.Logger;
|
18
|
import org.springframework.stereotype.Component;
|
19
|
|
20
|
import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
|
21
|
import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade.DerivedUnitType;
|
22
|
import eu.etaxonomy.cdm.common.CdmUtils;
|
23
|
import eu.etaxonomy.cdm.io.common.ICdmIO;
|
24
|
import eu.etaxonomy.cdm.io.excel.common.ExcelImporterBase;
|
25
|
import eu.etaxonomy.cdm.model.common.IdentifiableSource;
|
26
|
import eu.etaxonomy.cdm.model.location.NamedAreaLevel;
|
27
|
import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation;
|
28
|
|
29
|
/**
|
30
|
* @author p.kelbert
|
31
|
* @created 29.10.2008
|
32
|
* @version 1.0
|
33
|
*/
|
34
|
@Component
|
35
|
public class NamedAreaLevelExcelImport extends ExcelImporterBase<SpecimenCdmExcelImportState> implements ICdmIO<SpecimenCdmExcelImportState> {
|
36
|
private static final Logger logger = Logger.getLogger(NamedAreaLevelExcelImport.class);
|
37
|
|
38
|
private static final String WORKSHEET_NAME = "AreaLevels";
|
39
|
|
40
|
private static final String UUID_COLUMN = "UUID";
|
41
|
private static final String LABEL_COLUMN = "Label";
|
42
|
private static final String ABBREVIATION_COLUMN = "Abbreviation";
|
43
|
private static final String DESCRIPTION_COLUMN = "Description";
|
44
|
private static final String POSTFIX_COLUMN = "Postfix";
|
45
|
private static final String GEOSERVER_LABEL_COLUMN = "GeoserverLabel";
|
46
|
private static final String GEOSERVER_ATTRIBUTE_COLUMN = "GeoserverAttribute";
|
47
|
private static final String ORDER_INDEX_COLUMN = "OrderIndex";
|
48
|
|
49
|
|
50
|
public NamedAreaLevelExcelImport() {
|
51
|
super();
|
52
|
}
|
53
|
|
54
|
@Override
|
55
|
protected void analyzeRecord(HashMap<String, String> record, SpecimenCdmExcelImportState state) {
|
56
|
Set<String> keys = record.keySet();
|
57
|
|
58
|
NamedAreaLevellRow row = new NamedAreaLevellRow();
|
59
|
state.setNamedAreaLevelRow(row);
|
60
|
|
61
|
for (String originalKey: keys) {
|
62
|
Integer index = 0;
|
63
|
String indexedKey = CdmUtils.removeDuplicateWhitespace(originalKey.trim()).toString();
|
64
|
String[] split = indexedKey.split("_");
|
65
|
String key = split[0];
|
66
|
if (split.length > 1){
|
67
|
String indexString = split[split.length - 1];
|
68
|
try {
|
69
|
index = Integer.valueOf(indexString);
|
70
|
} catch (NumberFormatException e) {
|
71
|
String message = "Index must be integer";
|
72
|
logger.error(message);
|
73
|
continue;
|
74
|
}
|
75
|
}
|
76
|
|
77
|
String value = (String) record.get(indexedKey);
|
78
|
if (! StringUtils.isBlank(value)) {
|
79
|
if (logger.isDebugEnabled()) { logger.debug(key + ": " + value); }
|
80
|
value = CdmUtils.removeDuplicateWhitespace(value.trim()).toString();
|
81
|
}else{
|
82
|
continue;
|
83
|
}
|
84
|
|
85
|
if (key.equalsIgnoreCase(UUID_COLUMN)) {
|
86
|
row.setUuid(UUID.fromString(value)); //VALIDATE UUID
|
87
|
} else if(key.equalsIgnoreCase(LABEL_COLUMN)) {
|
88
|
row.setLabel(value);
|
89
|
} else if(key.equalsIgnoreCase(ABBREVIATION_COLUMN)) {
|
90
|
row.setAbbreviation(value);
|
91
|
} else if(key.equalsIgnoreCase(DESCRIPTION_COLUMN)) {
|
92
|
row.setDescription(value);
|
93
|
} else if(key.equalsIgnoreCase(POSTFIX_COLUMN)) {
|
94
|
row.setPostfix(value);
|
95
|
} else if(key.equalsIgnoreCase(GEOSERVER_LABEL_COLUMN)) {
|
96
|
row.setGeoserverLabel(value);
|
97
|
} else if(key.equalsIgnoreCase(GEOSERVER_ATTRIBUTE_COLUMN)) {
|
98
|
row.setGeoServerAttribute(value);
|
99
|
} else if(key.equalsIgnoreCase(ORDER_INDEX_COLUMN)) {
|
100
|
row.setOrderIndex(value);
|
101
|
}else {
|
102
|
state.setUnsuccessfull();
|
103
|
logger.error("Unexpected column header " + key);
|
104
|
}
|
105
|
}
|
106
|
return;
|
107
|
}
|
108
|
|
109
|
|
110
|
@Override
|
111
|
protected void firstPass(SpecimenCdmExcelImportState state) {
|
112
|
NamedAreaLevellRow row = state.getNamedAreaLevelRow();
|
113
|
|
114
|
//level
|
115
|
UUID uuid = row.getUuid();
|
116
|
String label = row.getAbbreviation();
|
117
|
String text = row.getDescription();
|
118
|
String labelAbbrev = row.getAbbreviation();
|
119
|
|
120
|
NamedAreaLevel level = getNamedAreaLevel(state, uuid, label, text, labelAbbrev, null);
|
121
|
|
122
|
//TODO orderIndex
|
123
|
|
124
|
//TODO geoserverLabel
|
125
|
|
126
|
//TODO geoserverAttribute
|
127
|
|
128
|
if (StringUtils.isNotBlank(row.getPostfix())){
|
129
|
state.putPostfixLevel(row.getPostfix(), level);
|
130
|
}
|
131
|
|
132
|
//save
|
133
|
getTermService().save(level);
|
134
|
return;
|
135
|
}
|
136
|
|
137
|
|
138
|
|
139
|
@Override
|
140
|
protected void secondPass(SpecimenCdmExcelImportState state) {
|
141
|
//no second path defined yet
|
142
|
return;
|
143
|
}
|
144
|
|
145
|
/* (non-Javadoc)
|
146
|
* @see eu.etaxonomy.cdm.io.common.CdmIoBase#doCheck(eu.etaxonomy.cdm.io.common.IoStateBase)
|
147
|
*/
|
148
|
@Override
|
149
|
protected boolean doCheck(SpecimenCdmExcelImportState state) {
|
150
|
logger.warn("Validation not yet implemented for " + this.getClass().getSimpleName());
|
151
|
return true;
|
152
|
}
|
153
|
|
154
|
protected String getWorksheetName() {
|
155
|
return WORKSHEET_NAME;
|
156
|
}
|
157
|
|
158
|
@Override
|
159
|
protected boolean needsNomenclaturalCode() {
|
160
|
return false;
|
161
|
}
|
162
|
|
163
|
|
164
|
@Override
|
165
|
protected boolean isIgnore(SpecimenCdmExcelImportState state) {
|
166
|
return !state.getConfig().isDoAreaLevels();
|
167
|
}
|
168
|
|
169
|
|
170
|
}
|