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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.specimen.excel.in;
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import java.util.HashMap;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import org.springframework.stereotype.Component;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.io.common.ICdmIO;
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import eu.etaxonomy.cdm.io.excel.common.ExcelImporterBase;
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import eu.etaxonomy.cdm.model.common.ExtensionType;
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/**
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* @author p.kelbert
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* @created 29.10.2008
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* @version 1.0
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*/
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@Component
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public class ExtensionTypeExcelImport extends ExcelImporterBase<SpecimenCdmExcelImportState> implements ICdmIO<SpecimenCdmExcelImportState> {
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private static final Logger logger = Logger.getLogger(ExtensionTypeExcelImport.class);
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private static final String WORKSHEET_NAME = "ExtensionTypes";
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private static final String UUID_COLUMN = "UUID";
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private static final String LABEL_COLUMN = "Label";
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private static final String ABBREVIATION_COLUMN = "Abbreviation";
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private static final String DESCRIPTION_COLUMN = "Description";
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private static final String POSTFIX_COLUMN = "Postfix";
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public ExtensionTypeExcelImport() {
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super();
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}
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@Override
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protected void analyzeRecord(HashMap<String, String> record, SpecimenCdmExcelImportState state) {
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Set<String> keys = record.keySet();
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NamedAreaLevellRow row = new NamedAreaLevellRow();
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state.setNamedAreaLevelRow(row);
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for (String originalKey: keys) {
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Integer index = 0;
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String indexedKey = CdmUtils.removeDuplicateWhitespace(originalKey.trim()).toString();
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String[] split = indexedKey.split("_");
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String key = split[0];
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if (split.length > 1){
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String indexString = split[split.length - 1];
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try {
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index = Integer.valueOf(indexString);
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} catch (NumberFormatException e) {
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String message = "Index must be integer";
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logger.error(message);
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continue;
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}
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}
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String value = (String) record.get(indexedKey);
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if (! StringUtils.isBlank(value)) {
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if (logger.isDebugEnabled()) { logger.debug(key + ": " + value); }
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value = CdmUtils.removeDuplicateWhitespace(value.trim()).toString();
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}else{
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continue;
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}
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if (key.equalsIgnoreCase(UUID_COLUMN)) {
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row.setUuid(UUID.fromString(value)); //VALIDATE UUID
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} else if(key.equalsIgnoreCase(LABEL_COLUMN)) {
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row.setLabel(value);
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} else if(key.equalsIgnoreCase(ABBREVIATION_COLUMN)) {
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row.setAbbreviation(value);
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} else if(key.equalsIgnoreCase(DESCRIPTION_COLUMN)) {
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row.setDescription(value);
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} else if(key.equalsIgnoreCase(POSTFIX_COLUMN)) {
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row.setPostfix(value);
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}else {
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state.setUnsuccessfull();
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logger.error("Unexpected column header " + key);
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}
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}
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return;
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}
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@Override
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protected void firstPass(SpecimenCdmExcelImportState state) {
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NamedAreaLevellRow row = state.getNamedAreaLevelRow();
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//level
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UUID uuid = row.getUuid();
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String label = row.getAbbreviation();
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String text = row.getDescription();
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String labelAbbrev = row.getAbbreviation();
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ExtensionType term = getExtensionType(state, uuid, label, text, labelAbbrev);
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if (StringUtils.isNotBlank(row.getPostfix())){
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state.putPostfixExtensionType(row.getPostfix(), term);
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}
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//save
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getTermService().save(term);
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return;
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}
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@Override
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protected void secondPass(SpecimenCdmExcelImportState state) {
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//no second path defined yet
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return;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.CdmIoBase#doCheck(eu.etaxonomy.cdm.io.common.IoStateBase)
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*/
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@Override
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protected boolean doCheck(SpecimenCdmExcelImportState state) {
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logger.warn("Validation not yet implemented for " + this.getClass().getSimpleName());
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return true;
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}
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protected String getWorksheetName() {
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return WORKSHEET_NAME;
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}
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@Override
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protected boolean needsNomenclaturalCode() {
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return false;
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}
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@Override
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protected boolean isIgnore(SpecimenCdmExcelImportState state) {
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return !state.getConfig().isDoExtensionTypes();
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}
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}
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