Revision 51171c9d
Added by Andreas Müller over 12 years ago
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/JaxbImport.java | ||
|---|---|---|
| 64 | 64 |
// protected boolean doInvoke(IImportConfigurator config, |
| 65 | 65 |
// Map<String, MapWrapper<? extends CdmBase>> stores) {
|
| 66 | 66 |
@Override |
| 67 |
protected boolean doInvoke(JaxbImportState state) {
|
|
| 67 |
protected void doInvoke(JaxbImportState state) {
|
|
| 68 | 68 |
|
| 69 | 69 |
state.getConfig(); |
| 70 |
boolean success = true; |
|
| 71 |
URI uri = null; |
|
| 70 |
URI uri = null; |
|
| 72 | 71 |
JaxbImportConfigurator jaxbImpConfig = (JaxbImportConfigurator)state.getConfig(); |
| 73 | 72 |
|
| 74 | 73 |
String urlFileName = jaxbImpConfig.getSource().toString(); |
| ... | ... | |
| 78 | 77 |
logger.debug("uri: " + uri.toString());
|
| 79 | 78 |
} catch (URISyntaxException ex) {
|
| 80 | 79 |
logger.error("File not found");
|
| 81 |
return false; |
|
| 80 |
state.setUnsuccessfull(); |
|
| 81 |
return; |
|
| 82 | 82 |
} |
| 83 | 83 |
|
| 84 | 84 |
logger.info("Deserializing " + urlFileName + " to DB " ); //+ dbname
|
| ... | ... | |
| 101 | 101 |
// save data in DB |
| 102 | 102 |
logger.error("Saving data to DB... "); //+ dbname
|
| 103 | 103 |
|
| 104 |
success = saveData(jaxbImpConfig, dataSet);
|
|
| 104 |
saveData(state, dataSet);
|
|
| 105 | 105 |
|
| 106 |
return success;
|
|
| 106 |
return; |
|
| 107 | 107 |
} |
| 108 | 108 |
|
| 109 | 109 |
|
| 110 | 110 |
/** Saves data in DB */ |
| 111 |
private boolean saveData (JaxbImportConfigurator jaxbImpConfig, DataSet dataSet) {
|
|
| 112 |
|
|
| 113 |
boolean ret = true; |
|
| 111 |
private void saveData (JaxbImportState state, DataSet dataSet) {
|
|
| 112 |
JaxbImportConfigurator jaxbImpConfig = state.getConfig(); |
|
| 113 |
|
|
| 114 |
boolean success = true; |
|
| 114 | 115 |
Collection<TaxonBase> taxonBases; |
| 115 | 116 |
List<? extends AgentBase> agents; |
| 116 | 117 |
List<DefinedTermBase> terms; |
| ... | ... | |
| 146 | 147 |
if ((jaxbImpConfig.isDoTerms() == true) |
| 147 | 148 |
&& (terms = dataSet.getTerms()).size() > 0) {
|
| 148 | 149 |
//txStatus = startTransaction(); |
| 149 |
ret &= saveTerms(terms);
|
|
| 150 |
success &= saveTerms(terms);
|
|
| 150 | 151 |
|
| 151 | 152 |
//commitTransaction(txStatus); |
| 152 | 153 |
} |
| 153 | 154 |
if ((jaxbImpConfig.isDoTermVocabularies() == true) |
| 154 | 155 |
&& (termVocabularies = dataSet.getTermVocabularies()).size() > 0) {
|
| 155 | 156 |
//txStatus = startTransaction(); |
| 156 |
ret &= saveTermVocabularies(termVocabularies);
|
|
| 157 |
success &= saveTermVocabularies(termVocabularies);
|
|
| 157 | 158 |
|
| 158 | 159 |
} |
| 159 | 160 |
|
| ... | ... | |
| 182 | 183 |
} |
| 183 | 184 |
} catch (Exception ex) {
|
| 184 | 185 |
logger.error("Error saving users");
|
| 185 |
ret = false;
|
|
| 186 |
success = false;
|
|
| 186 | 187 |
} |
| 187 | 188 |
|
| 188 | 189 |
//txStatus = startTransaction(); |
| ... | ... | |
| 195 | 196 |
} |
| 196 | 197 |
} catch (Exception ex) {
|
| 197 | 198 |
logger.error("Error saving agents");
|
| 198 |
ret = false;
|
|
| 199 |
success = false;
|
|
| 199 | 200 |
} |
| 200 | 201 |
//commitTransaction(txStatus); |
| 201 | 202 |
|
| ... | ... | |
| 212 | 213 |
} catch (Exception ex) {
|
| 213 | 214 |
ex.printStackTrace(); |
| 214 | 215 |
logger.error("Error saving references");
|
| 215 |
ret = false;
|
|
| 216 |
success = false;
|
|
| 216 | 217 |
} |
| 217 | 218 |
//commitTransaction(txStatus); |
| 218 | 219 |
|
| ... | ... | |
| 227 | 228 |
} |
| 228 | 229 |
} catch (Exception ex) {
|
| 229 | 230 |
logger.error("Error saving taxon names");
|
| 230 |
ret = false;
|
|
| 231 |
success = false;
|
|
| 231 | 232 |
} |
| 232 | 233 |
//commitTransaction(txStatus); |
| 233 | 234 |
|
| ... | ... | |
| 243 | 244 |
} |
| 244 | 245 |
} catch (Exception ex) {
|
| 245 | 246 |
logger.error("Error saving homotypical groups");
|
| 246 |
ret = false;
|
|
| 247 |
success = false;
|
|
| 247 | 248 |
} |
| 248 | 249 |
//commitTransaction(txStatus); |
| 249 | 250 |
|
| ... | ... | |
| 265 | 266 |
} catch (Exception ex) {
|
| 266 | 267 |
logger.error("Error saving taxa");
|
| 267 | 268 |
ex.printStackTrace(); |
| 268 |
ret = false;
|
|
| 269 |
success = false;
|
|
| 269 | 270 |
} |
| 270 | 271 |
//commitTransaction(txStatus); |
| 271 | 272 |
|
| ... | ... | |
| 281 | 282 |
} |
| 282 | 283 |
} catch (Exception ex) {
|
| 283 | 284 |
logger.error("Error saving type designations");
|
| 284 |
ret = false;
|
|
| 285 |
success = false;
|
|
| 285 | 286 |
} |
| 286 | 287 |
//commitTransaction(txStatus); |
| 287 | 288 |
|
| ... | ... | |
| 302 | 303 |
} |
| 303 | 304 |
} catch (Exception ex) {
|
| 304 | 305 |
logger.error("Error saving occurrences");
|
| 305 |
ret = false;
|
|
| 306 |
success = false;
|
|
| 306 | 307 |
} |
| 307 | 308 |
//commitTransaction(txStatus); |
| 308 | 309 |
|
| ... | ... | |
| 317 | 318 |
} |
| 318 | 319 |
} catch (Exception ex) {
|
| 319 | 320 |
logger.error("Error saving feature data");
|
| 320 |
ret = false;
|
|
| 321 |
success = false;
|
|
| 321 | 322 |
} |
| 322 | 323 |
//commitTransaction(txStatus); |
| 323 | 324 |
|
| ... | ... | |
| 332 | 333 |
} |
| 333 | 334 |
} catch (Exception ex) {
|
| 334 | 335 |
logger.error("Error saving media");
|
| 335 |
ret = false;
|
|
| 336 |
success = false;
|
|
| 336 | 337 |
} |
| 337 | 338 |
|
| 338 | 339 |
if (jaxbImpConfig.isDoClassificationData() == true) {
|
| ... | ... | |
| 349 | 350 |
|
| 350 | 351 |
commitTransaction(txStatus); |
| 351 | 352 |
logger.info("All data saved");
|
| 352 |
|
|
| 353 |
return ret; |
|
| 353 |
if (!success){
|
|
| 354 |
state.setUnsuccessfull(); |
|
| 355 |
} |
|
| 356 |
|
|
| 357 |
return; |
|
| 354 | 358 |
|
| 355 | 359 |
} |
| 356 | 360 |
|
Also available in: Unified diff
last updates for Taxon Excel Import and moving all success variables to state