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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.strategy.cache.name;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertNull;
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import java.util.List;
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import org.apache.log4j.Logger;
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import org.junit.Assert;
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import org.junit.Before;
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import org.junit.Test;
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import eu.etaxonomy.cdm.common.UTF8;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
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import eu.etaxonomy.cdm.model.name.HybridRelationshipType;
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import eu.etaxonomy.cdm.model.name.IBotanicalName;
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import eu.etaxonomy.cdm.model.name.INonViralName;
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import eu.etaxonomy.cdm.model.name.IZoologicalName;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatus;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.model.name.TaxonNameFactory;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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import eu.etaxonomy.cdm.strategy.cache.HTMLTagRules;
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import eu.etaxonomy.cdm.strategy.cache.TagEnum;
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import eu.etaxonomy.cdm.strategy.cache.TaggedCacheHelper;
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import eu.etaxonomy.cdm.strategy.cache.TaggedText;
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import eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl;
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import eu.etaxonomy.cdm.strategy.parser.TimePeriodParser;
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/**
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* @author a.mueller
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* @since 26.11.2008
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*/
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public class TaxonNameDefaultCacheStrategyTest extends NameCacheStrategyTestBase {
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(TaxonNameDefaultCacheStrategyTest.class);
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private TaxonNameDefaultCacheStrategy strategy;
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private static final String familyNameString = "Familia";
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private static final String genusNameString = "Genus";
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private static final String speciesNameString = "Abies alba";
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private static final String subSpeciesNameString = "Abies alba subsp. beta";
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private static final String authorString = "L.";
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private static final String exAuthorString = "Exaut.";
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private static final String basAuthorString = "Basio, A.";
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private static final String exBasAuthorString = "ExBas. N.";
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private static final String referenceTitle = "My Reference";
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private IBotanicalName familyName;
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private IBotanicalName genusName;
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private IBotanicalName subGenusName;
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private TaxonName speciesName;
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private TaxonName subSpeciesName;
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private TeamOrPersonBase<?> author;
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private TeamOrPersonBase<?> exAuthor;
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private TeamOrPersonBase<?> basAuthor;
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private TeamOrPersonBase<?> exBasAuthor;
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private Reference citationRef;
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@Before
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public void setUp() throws Exception {
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strategy = TaxonNameDefaultCacheStrategy.NewInstance();
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familyName = TaxonNameFactory.PARSED_BOTANICAL(familyNameString, Rank.FAMILY());
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genusName = TaxonNameFactory.PARSED_BOTANICAL(genusNameString, Rank.GENUS());
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subGenusName = TaxonNameFactory.NewBotanicalInstance(Rank.SUBGENUS());
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subGenusName.setGenusOrUninomial("Genus");
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subGenusName.setInfraGenericEpithet("InfraGenericPart");
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speciesName = TaxonNameFactory.PARSED_BOTANICAL(speciesNameString);
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subSpeciesName = TaxonNameFactory.PARSED_BOTANICAL(subSpeciesNameString);
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author = Person.NewInstance();
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author.setNomenclaturalTitle(authorString);
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exAuthor = Person.NewInstance();
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exAuthor.setNomenclaturalTitle(exAuthorString);
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basAuthor = Person.NewInstance();
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basAuthor.setNomenclaturalTitle(basAuthorString);
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exBasAuthor = Person.NewInstance();
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exBasAuthor.setNomenclaturalTitle(exBasAuthorString);
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citationRef = ReferenceFactory.newGeneric();
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citationRef.setTitleCache(referenceTitle, true);
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}
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//**************************** TESTS **************************************************
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@Test
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public void testGetTitleCache() {
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Assert.assertEquals(speciesNameString, speciesName.getTitleCache());
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//TODO not yet completed
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}
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@Test
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public void testGetFullTitleCache() {
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subSpeciesName.setNomenclaturalReference(citationRef);
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Assert.assertEquals(subSpeciesNameString + ", " + referenceTitle, subSpeciesName.getFullTitleCache());
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//TODO not yet completed
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}
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@Test
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public void testGattungsAutonyme() {
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IBotanicalName botName = TaxonNameFactory.NewBotanicalInstance(Rank.SECTION_BOTANY());
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String strTaraxacum = "Traxacum";
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botName.setGenusOrUninomial(strTaraxacum);
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botName.setInfraGenericEpithet(strTaraxacum);
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botName.setAuthorshipCache("Author");
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Assert.assertFalse(botName.getFullTitleCache().contains("bot."));
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//TODO #4288
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// System.out.println(botName.getFullTitleCache());
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}
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@Test
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public void testGetNameCache() {
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assertEquals("Species Name should be Abies alba", speciesNameString, speciesName.getNameCache());
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speciesName.setNameCache("Any species");
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assertEquals("Species Name should be Any species", "Any species", speciesName.getNameCache());
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assertEquals("Species Name should be Any species", "Any species", speciesName.getTitleCache());
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assertEquals("subSpeciesNameString should be correct", subSpeciesNameString, subSpeciesName.getNameCache());
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IBotanicalName botName = TaxonNameFactory.NewBotanicalInstance(Rank.VARIETY());
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botName.setGenusOrUninomial("Lepidocaryum");
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botName.setSpecificEpithet("tenue");
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botName.setInfraSpecificEpithet("tenue");
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assertEquals("", "Lepidocaryum tenue var. tenue", botName.getNameCache());
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IBotanicalName specName = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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specName.setGenusOrUninomial("Genus");
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specName.setSpecificEpithet("");
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assertEquals("Empty species string must not result in trailing whitespace", "Genus", specName.getNameCache());
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//unranked taxa
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String unrankedCache;
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TaxonName unrankedName = TaxonNameFactory.NewBotanicalInstance(Rank.INFRASPECIFICTAXON());
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unrankedName.setGenusOrUninomial("Genus");
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TaxonNameDefaultCacheStrategy strategy = TaxonNameDefaultCacheStrategy.NewInstance();
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//infraspecific
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unrankedName.setInfraSpecificEpithet("infraspecific");
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unrankedName.setSpecificEpithet("species");
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unrankedCache = strategy.getNameCache(unrankedName);
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Assert.assertEquals("Correct unranked cache expected", "Genus species [infraspec.] infraspecific", unrankedCache);
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//infrageneric
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unrankedName.setRank(Rank.INFRAGENERICTAXON());
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unrankedName.setInfraSpecificEpithet(null);
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unrankedName.setSpecificEpithet(null);
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unrankedName.setInfraGenericEpithet("Infrageneric");
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unrankedCache = strategy.getNameCache(unrankedName);
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Assert.assertEquals("Correct unranked cache expected", "Genus [unranked] Infrageneric", unrankedCache);
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//bot. specific ranks
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botName = TaxonNameFactory.NewBotanicalInstance(Rank.SECTION_BOTANY());
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botName.setGenusOrUninomial("Genus");
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botName.setInfraGenericEpithet("Infragenus");
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Assert.assertEquals("", "Genus sect. Infragenus", botName.getNameCache());
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botName.setRank(Rank.SUBSECTION_BOTANY());
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Assert.assertEquals("", "Genus subsect. Infragenus", botName.getNameCache());
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//zool. specific ranks (we don't have markers here therefore no problem should exist
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IZoologicalName zooName = TaxonNameFactory.NewZoologicalInstance(Rank.SECTION_ZOOLOGY());
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zooName.setGenusOrUninomial("Genus");
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zooName.setInfraGenericEpithet("Infragenus");
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Assert.assertEquals("", "Genus", zooName.getNameCache());
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zooName.setRank(Rank.SUBSECTION_ZOOLOGY());
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Assert.assertEquals("", "Genus", zooName.getNameCache());
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}
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@Test
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public void testNameCacheWithInfraGenericEpithet() {
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speciesName.setInfraGenericEpithet("Infraabies");
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assertEquals("Species Name should be Abies (Infraabies) alba", "Abies (Infraabies) alba", speciesName.getNameCache());
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IBotanicalName botName = TaxonNameFactory.NewBotanicalInstance(Rank.VARIETY());
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botName.setGenusOrUninomial("Lepidocaryum");
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botName.setInfraGenericEpithet("Infralepi");
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botName.setSpecificEpithet("tenue");
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botName.setInfraSpecificEpithet("tenue");
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assertEquals("Name cache should be Lepidocaryum (Infralepi) tenue var. tenue", "Lepidocaryum (Infralepi) tenue var. tenue", botName.getNameCache());
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botName.setInfraGenericEpithet(" ");
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//Note: This test may fail if aspectj doesn't work correctly
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assertEquals("Empty infrageneric epithet must be neglegted", "Lepidocaryum tenue var. tenue", botName.getNameCache());
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}
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@Test
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public void testGetAuthorshipCache() {
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this.speciesName.setCombinationAuthorship(author);
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assertEquals(author.getNomenclaturalTitle(), speciesName.getAuthorshipCache());
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this.speciesName.setBasionymAuthorship(basAuthor);
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String expected = strategy.getBasionymStart()+ basAuthor.getNomenclaturalTitle()+strategy.getBasionymEnd()+strategy.getBasionymAuthorCombinationAuthorSeperator()+author.getNomenclaturalTitle();
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assertEquals(expected, speciesName.getAuthorshipCache());
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String authorshipcache = "authorshipcache";
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speciesName.setAuthorshipCache(authorshipcache);
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assertEquals(authorshipcache, speciesName.getAuthorshipCache());
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speciesName.setCombinationAuthorship(exAuthor);
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assertEquals(authorshipcache, speciesName.getAuthorshipCache()); //cache is protected
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assertEquals(speciesNameString + " " + authorshipcache, speciesName.getFullTitleCache());
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//unprotected
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speciesName.setProtectedAuthorshipCache(false);
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String atomizedAuthorCache = strategy.getBasionymStart()+ basAuthor.getNomenclaturalTitle()+strategy.getBasionymEnd()+strategy.getBasionymAuthorCombinationAuthorSeperator()+exAuthor.getNomenclaturalTitle();
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assertEquals(atomizedAuthorCache, speciesName.getAuthorshipCache());
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String atomizedTitleCache = speciesNameString + " "+ strategy.getBasionymStart()+ basAuthor.getNomenclaturalTitle()+strategy.getBasionymEnd()+strategy.getBasionymAuthorCombinationAuthorSeperator()+exAuthor.getNomenclaturalTitle();
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//Note: This test may fail if aspectj doesn't work correctly
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assertEquals(atomizedTitleCache, speciesName.getTitleCache());
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assertEquals(atomizedTitleCache, speciesName.getFullTitleCache());
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}
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@Test
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public void testHybridNames() {
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//Note \u00D7 : hybrid sign (multiplication sign)
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this.speciesName.setCombinationAuthorship(author);
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Assert.assertEquals(author.getNomenclaturalTitle(), speciesName.getAuthorshipCache());
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Assert.assertEquals("Should be Abies alba L.", "Abies alba L.", speciesName.getTitleCache());
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speciesName.setBinomHybrid(true);
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//Note: This test may fail if aspectj doesn't work correctly
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Assert.assertEquals("Should be Abies \u00D7alba L.", "Abies \u00D7alba L.", speciesName.getTitleCache());
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speciesName.setMonomHybrid(true);
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Assert.assertEquals("Should be '\u00D7Abies \u00D7alba L.'", "\u00D7Abies \u00D7alba L.", speciesName.getTitleCache());
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Assert.assertEquals("Should be 'Genus'", "Genus", genusName.getTitleCache());
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genusName.setMonomHybrid(true);
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Assert.assertEquals("Should be '\u00D7Genus'", "\u00D7Genus", genusName.getTitleCache());
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Assert.assertEquals("Should be 'Abies alba subsp. beta'", subSpeciesNameString, subSpeciesName.getTitleCache());
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subSpeciesName.setTrinomHybrid(true);
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Assert.assertEquals("Should be 'Abies alba nothosubsp. beta or nbeta'", "Abies alba nothosubsp. beta", subSpeciesName.getTitleCache());
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subSpeciesName.setMonomHybrid(true);
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Assert.assertEquals("Should be '\u00D7Abies alba nothosubsp. beta'", "\u00D7Abies alba nothosubsp. beta", subSpeciesName.getTitleCache());
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Assert.assertEquals("Should be 'Genus subg. InfraGenericPart'", "Genus subg. InfraGenericPart", subGenusName.getTitleCache());
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subGenusName.setBinomHybrid(true);
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Assert.assertEquals("Should be 'Genus nothosubg. InfraGenericPart'", "Genus nothosubg. InfraGenericPart", subGenusName.getTitleCache());
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}
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@Test
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public void testHybridFormula(){
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this.speciesName.setCombinationAuthorship(author);
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Assert.assertEquals(author.getNomenclaturalTitle(), speciesName.getAuthorshipCache());
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Assert.assertEquals("Should be 'Abies alba L.'", "Abies alba L.", speciesName.getTitleCache());
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INonViralName hybridName = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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INonViralName secondParent = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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secondParent.setTitleCache("Second parent Mill.", true);
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hybridName.addHybridParent(speciesName, HybridRelationshipType.FIRST_PARENT(), null);
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hybridName.addHybridParent(secondParent, HybridRelationshipType.SECOND_PARENT(), null);
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hybridName.setHybridFormula(true);
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Assert.assertEquals("", "Abies alba L. \u00D7 Second parent Mill.", hybridName.getTitleCache());
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//Note: handling of empty nameCache of parents may change in future
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Assert.assertEquals("", "Abies alba \u00D7", hybridName.getNameCache());
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secondParent.setGenusOrUninomial("Second");
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secondParent.setSpecificEpithet("parent");
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hybridName.setNameCache(null, false);
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Assert.assertEquals("", "Abies alba \u00D7 Second parent", hybridName.getNameCache());
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}
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//TODO add more tests when specification is clearer
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//3665
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@Test
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public void testOriginalSpelling() {
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TaxonName originalName = speciesName.clone();
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originalName.setSpecificEpithet("alpa");
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Assert.assertEquals("Preconditions are wrong", "Abies alpa", originalName.getTitleCache());
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Assert.assertEquals("Name cache should not show original spelling", "Abies alpa", originalName.getNameCache());
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speciesName.setOriginalSpelling(originalName);
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Assert.assertEquals("Abies alba [as \"alpa\"]", speciesName.getFullTitleCache());
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Assert.assertEquals("Abies alba", speciesName.getTitleCache());
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Assert.assertEquals("Name cache should not show original spelling", "Abies alba", speciesName.getNameCache());
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originalName.setGenusOrUninomial("Apies");
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speciesName.setNameCache(null, false);
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//TODO update cache of current name (species name)
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Assert.assertEquals("Abies alba [as \"Apies alpa\"]", speciesName.getFullTitleCache());
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Assert.assertEquals("Abies alba", speciesName.getTitleCache());
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Assert.assertEquals("Name cache should not show original spelling", "Abies alba", speciesName.getNameCache());
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//#3665
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INonViralName correctName = NonViralNameParserImpl.NewInstance().parseFullName("Nepenthes glabrata J.R.Turnbull & A.T.Middleton");
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TaxonName originalSpelling = (TaxonName)NonViralNameParserImpl.NewInstance().parseFullName("Nepenthes glabratus");
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correctName.setOriginalSpelling(originalSpelling);
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Assert.assertEquals("Nepenthes glabrata", correctName.getNameCache());
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Assert.assertEquals("Nepenthes glabrata J.R.Turnbull & A.T.Middleton", correctName.getTitleCache());
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Assert.assertEquals("Nepenthes glabrata J.R.Turnbull & A.T.Middleton [as \"glabratus\"]", correctName.getFullTitleCache());
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correctName.setNomenclaturalReference(citationRef);
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Assert.assertEquals("Nepenthes glabrata J.R.Turnbull & A.T.Middleton, My Reference [as \"glabratus\"]", correctName.getFullTitleCache());
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citationRef.setProtectedTitleCache(false);
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citationRef.setTitle("Sp. Pl.");
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citationRef.setDatePublished(TimePeriodParser.parseStringVerbatim("1988"));
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correctName.setFullTitleCache(null, false);
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Assert.assertEquals("Nepenthes glabrata J.R.Turnbull & A.T.Middleton, Sp. Pl. 1988 [as \"glabratus\"]", correctName.getFullTitleCache());
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correctName.addStatus(NomenclaturalStatus.NewInstance(NomenclaturalStatusType.ILLEGITIMATE()));
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correctName.setFullTitleCache(null, false);
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Assert.assertEquals("Nepenthes glabrata J.R.Turnbull & A.T.Middleton, Sp. Pl. 1988 [as \"glabratus\"], nom. illeg.", correctName.getFullTitleCache());
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//TODO add more tests when specification of exact behaviour is clearer
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}
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@Test
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public void testCacheListener() {
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Reference ref = ReferenceFactory.newGeneric();
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ref.setTitleCache("GenericRef",true);
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this.subSpeciesName.setNomenclaturalReference(ref);
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Assert.assertEquals("Expected full title cache has error", "Abies alba subsp. beta, GenericRef", subSpeciesName.getFullTitleCache());
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subSpeciesName.setCombinationAuthorship(author);
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subSpeciesName.setBasionymAuthorship(basAuthor);
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Assert.assertEquals("Expected full title cache has error", "Abies alba subsp. beta (Basio, A.) L., GenericRef", subSpeciesName.getFullTitleCache());
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//cascade name change to fullTitleCache
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subSpeciesName.setRank(Rank.SPECIES());
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subSpeciesName.setProtectedNameCache(true);
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Assert.assertNull("name cache should be null", subSpeciesName.getNameCache());
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subSpeciesName.setProtectedNameCache(false);
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Assert.assertNotNull("name cache should not be null", subSpeciesName.getNameCache());
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336
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Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) L., GenericRef", subSpeciesName.getFullTitleCache());
|
337
|
Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) L.", subSpeciesName.getTitleCache());
|
338
|
Assert.assertEquals("Expected full title cache has error", "Abies alba", subSpeciesName.getNameCache());
|
339
|
|
340
|
subSpeciesName.setProtectedNameCache(true);
|
341
|
subSpeciesName.setSpecificEpithet("gamma");
|
342
|
Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) L., GenericRef", subSpeciesName.getFullTitleCache());
|
343
|
Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) L.", subSpeciesName.getTitleCache());
|
344
|
Assert.assertEquals("Expected full title cache has error", "Abies alba", subSpeciesName.getNameCache());
|
345
|
//make original status
|
346
|
subSpeciesName.setRank(Rank.SUBSPECIES());
|
347
|
Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) L., GenericRef", subSpeciesName.getFullTitleCache());
|
348
|
|
349
|
//author change
|
350
|
author.setNomenclaturalTitle("M.");
|
351
|
Assert.assertEquals("Expected full title cache has error", "(Basio, A.) M.", subSpeciesName.getAuthorshipCache());
|
352
|
Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
|
353
|
Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) M.", subSpeciesName.getTitleCache());
|
354
|
|
355
|
//protectedTitleCache
|
356
|
subSpeciesName.setProtectedTitleCache(true);
|
357
|
subSpeciesName.setProtectedNameCache(false);
|
358
|
subSpeciesName.setGenusOrUninomial("Pinus");
|
359
|
subSpeciesName.setSpecificEpithet("alba");
|
360
|
Assert.assertEquals("Expected full title cache has error", "Pinus alba subsp. beta", subSpeciesName.getNameCache());
|
361
|
Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
|
362
|
Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) M.", subSpeciesName.getTitleCache());
|
363
|
|
364
|
subSpeciesName.setTitleCache("Pinus beta C.", true);
|
365
|
Assert.assertEquals("Expected full title cache has error", "Pinus beta C., GenericRef", subSpeciesName.getFullTitleCache());
|
366
|
subSpeciesName.setProtectedTitleCache(false);
|
367
|
|
368
|
Assert.assertEquals("Expected full title cache has error", "Pinus alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
|
369
|
|
370
|
//protected full title cache set
|
371
|
subSpeciesName.setFullTitleCache("ABC");
|
372
|
Assert.assertEquals("Expected full title cache has error", "ABC", subSpeciesName.getFullTitleCache());
|
373
|
subSpeciesName.setProtectedFullTitleCache(false);
|
374
|
Assert.assertEquals("Expected full title cache has error", "Pinus alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
|
375
|
|
376
|
//protected title cache set
|
377
|
subSpeciesName.setProtectedTitleCache(false);
|
378
|
Assert.assertEquals("Expected full title cache has error", "Pinus alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
|
379
|
|
380
|
//protectedNameCache set
|
381
|
subSpeciesName.setProtectedNameCache(true);
|
382
|
Assert.assertEquals("Expected full title cache has error", "Pinus alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
|
383
|
subSpeciesName.setNameCache("P. alba subsp. beta");
|
384
|
Assert.assertEquals("Expected full title cache has error", "P. alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
|
385
|
|
386
|
subSpeciesName.setGenusOrUninomial("A.");
|
387
|
subSpeciesName.setProtectedNameCache(false);
|
388
|
Assert.assertEquals("Expected full title cache has error", "A. alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
|
389
|
subSpeciesName.setNameCache("P. alba subsp. beta");
|
390
|
Assert.assertEquals("Expected full title cache has error", "P. alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
|
391
|
|
392
|
//protected authorship
|
393
|
subSpeciesName.setProtectedAuthorshipCache(true);
|
394
|
Assert.assertEquals("Expected full title cache has error", "P. alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
|
395
|
subSpeciesName.setAuthorshipCache("Ciard.");
|
396
|
Assert.assertEquals("Expected full title cache has error", "P. alba subsp. beta Ciard., GenericRef", subSpeciesName.getFullTitleCache());
|
397
|
|
398
|
author.setNomenclaturalTitle("X.");
|
399
|
subSpeciesName.setProtectedAuthorshipCache(false);
|
400
|
Assert.assertEquals("Expected full title cache has error", "P. alba subsp. beta (Basio, A.) X., GenericRef", subSpeciesName.getFullTitleCache());
|
401
|
|
402
|
//clear
|
403
|
subSpeciesName.setProtectedNameCache(false);
|
404
|
Assert.assertEquals("Expected full title cache has error", "A. alba subsp. beta (Basio, A.) X., GenericRef", subSpeciesName.getFullTitleCache());
|
405
|
|
406
|
//appended phrase
|
407
|
subSpeciesName.setProtectedNameCache(true);
|
408
|
Assert.assertEquals("Expected full title cache has error", "A. alba subsp. beta (Basio, A.) X., GenericRef", subSpeciesName.getFullTitleCache());
|
409
|
subSpeciesName.setAppendedPhrase("app phrase");
|
410
|
Assert.assertEquals("Expected full title cache has error", "A. alba subsp. beta (Basio, A.) X., GenericRef", subSpeciesName.getFullTitleCache());
|
411
|
subSpeciesName.setProtectedNameCache(false);
|
412
|
Assert.assertEquals("Expected full title cache has error", "A. alba subsp. beta app phrase (Basio, A.) X., GenericRef", subSpeciesName.getFullTitleCache());
|
413
|
subSpeciesName.setAppendedPhrase("app2 phrase2");
|
414
|
subSpeciesName.setProtectedNameCache(true);
|
415
|
Assert.assertNull("NameCache should be null", subSpeciesName.getNameCache());
|
416
|
subSpeciesName.setProtectedNameCache(false);
|
417
|
subSpeciesName.setAppendedPhrase(null);
|
418
|
|
419
|
//ref + nomRef
|
420
|
Reference book = ReferenceFactory.newBook();
|
421
|
book.setTitle("Booktitle");
|
422
|
Assert.assertNotNull("TitleCache should not be null", subSpeciesName.getTitleCache());
|
423
|
subSpeciesName.setNomenclaturalReference(book);
|
424
|
subSpeciesName.setNomenclaturalMicroReference("22");
|
425
|
Assert.assertEquals("Expected full title cache has error", "A. alba subsp. beta (Basio, A.) X., Booktitle: 22", subSpeciesName.getFullTitleCache());
|
426
|
subSpeciesName.setProtectedTitleCache(true);
|
427
|
Assert.assertNotNull("TitleCache should not be null", subSpeciesName.getTitleCache());
|
428
|
|
429
|
//year
|
430
|
IZoologicalName zooName = TaxonNameFactory.NewZoologicalInstance(Rank.SPECIES());
|
431
|
zooName.setGenusOrUninomial("Homo");
|
432
|
zooName.setSpecificEpithet("sapiens");
|
433
|
zooName.setBasionymAuthorship(basAuthor);
|
434
|
zooName.setCombinationAuthorship(author);
|
435
|
zooName.setNomenclaturalReference(book);
|
436
|
zooName.setNomenclaturalMicroReference("22");
|
437
|
Assert.assertEquals("Expected full title cache has error", "Homo sapiens (Basio, A.) X., Booktitle: 22", zooName.getFullTitleCache());
|
438
|
|
439
|
zooName.setOriginalPublicationYear(1922);
|
440
|
zooName.setPublicationYear(1948);
|
441
|
Assert.assertEquals("Expected full title cache has error", "Homo sapiens (Basio, A., 1922) X., 1948, Booktitle: 22", zooName.getFullTitleCache());
|
442
|
zooName.setOriginalPublicationYear(1923);
|
443
|
zooName.setProtectedAuthorshipCache(true);
|
444
|
Assert.assertNull("AuthorshipCache should be null", zooName.getAuthorshipCache());
|
445
|
zooName.setProtectedAuthorshipCache(false);
|
446
|
Assert.assertNotNull("AuthorshipCache should not be null", zooName.getAuthorshipCache());
|
447
|
zooName.setPublicationYear(1949);
|
448
|
zooName.setProtectedAuthorshipCache(true);
|
449
|
Assert.assertNull("AuthorshipCache should be null", zooName.getAuthorshipCache());
|
450
|
|
451
|
}
|
452
|
|
453
|
@Test
|
454
|
public void testGetSetNameAuthorSeperator() {
|
455
|
String authorSeparator = "authorSeparator";
|
456
|
strategy.setNameAuthorSeperator(authorSeparator);
|
457
|
assertEquals(authorSeparator, strategy.getNameAuthorSeperator());
|
458
|
strategy.setNameAuthorSeperator(null);
|
459
|
assertNull(strategy.getNameAuthorSeperator());
|
460
|
}
|
461
|
|
462
|
@Test
|
463
|
public void testGetSetBasionymStart() {
|
464
|
String basStart = "start";
|
465
|
strategy.setBasionymStart(basStart);
|
466
|
assertEquals(basStart, strategy.getBasionymStart());
|
467
|
strategy.setBasionymStart(null);
|
468
|
assertNull(strategy.getBasionymStart());
|
469
|
}
|
470
|
|
471
|
@Test
|
472
|
public void testGetSetBasionymEnd() {
|
473
|
String basEnd = "end";
|
474
|
strategy.setBasionymEnd(basEnd);
|
475
|
assertEquals(basEnd, strategy.getBasionymEnd());
|
476
|
strategy.setBasionymEnd(null);
|
477
|
assertNull(strategy.getBasionymEnd());
|
478
|
}
|
479
|
|
480
|
@Test
|
481
|
public void testGetSetExAuthorSeperator() {
|
482
|
String exAuthorSeparator = "exAuthorSeparator";
|
483
|
strategy.setExAuthorSeperator(exAuthorSeparator);
|
484
|
assertEquals(exAuthorSeparator, strategy.getExAuthorSeperator());
|
485
|
strategy.setExAuthorSeperator(null);
|
486
|
assertNull(strategy.getExAuthorSeperator());
|
487
|
}
|
488
|
|
489
|
@Test
|
490
|
public void testSetBasionymAuthorCombinationAuthorSeperator() {
|
491
|
String basComSeparator = "basComSeparator";
|
492
|
strategy.setBasionymAuthorCombinationAuthorSeperator(basComSeparator);
|
493
|
assertEquals(basComSeparator, strategy.getBasionymAuthorCombinationAuthorSeperator());
|
494
|
strategy.setBasionymAuthorCombinationAuthorSeperator(null);
|
495
|
assertNull(strategy.getBasionymAuthorCombinationAuthorSeperator());
|
496
|
}
|
497
|
|
498
|
@Test
|
499
|
public void testGetInfraGenericNames(){
|
500
|
String author = "Anyauthor";
|
501
|
TaxonName nonViralName = TaxonNameFactory.NewNonViralInstance(Rank.SUBGENUS());
|
502
|
nonViralName.setGenusOrUninomial("Genus");
|
503
|
nonViralName.setInfraGenericEpithet("subgenus");
|
504
|
nonViralName.setAuthorshipCache(author);
|
505
|
|
506
|
//test ordinary infrageneric
|
507
|
List<TaggedText> subGenusNameCacheTagged = strategy.getInfraGenusTaggedNameCache(nonViralName);
|
508
|
String subGenusNameCache = TaggedCacheHelper.createString(subGenusNameCacheTagged);
|
509
|
assertEquals("Subgenus name should be 'Genus subg. subgenus'.", "Genus subg. subgenus", subGenusNameCache);
|
510
|
String subGenusTitle = strategy.getTitleCache(nonViralName);
|
511
|
assertEquals("Subgenus name should be 'Genus subg. subgenus Anyauthor'.", "Genus subg. subgenus Anyauthor", subGenusTitle);
|
512
|
|
513
|
//test species aggregates and species groups
|
514
|
nonViralName.setRank(Rank.SPECIESAGGREGATE());
|
515
|
nonViralName.setSpecificEpithet("myspecies");
|
516
|
nonViralName.setInfraGenericEpithet(null);
|
517
|
nonViralName.setAuthorshipCache(null);
|
518
|
|
519
|
List<TaggedText> aggrNameCacheTagged = strategy.getInfraGenusTaggedNameCache(nonViralName);
|
520
|
|
521
|
String aggrNameCache = TaggedCacheHelper.createString(aggrNameCacheTagged);
|
522
|
assertEquals("Species aggregate name should be 'Genus myspecies aggr.'.", "Genus myspecies aggr.", aggrNameCache);
|
523
|
String aggrNameTitle = strategy.getTitleCache(nonViralName);
|
524
|
Assert.assertTrue("Species aggregate should not include author information.", aggrNameTitle.indexOf(author) == -1);
|
525
|
assertEquals("Species aggregate name should be 'Genus myspecies aggr.'.", "Genus myspecies aggr.", aggrNameTitle);
|
526
|
nonViralName.setRank(Rank.SPECIESGROUP());
|
527
|
String groupNameTitle = strategy.getTitleCache(nonViralName);
|
528
|
assertEquals("Species group name should be 'Genus myspecies species group'.", "Genus myspecies species group", groupNameTitle);
|
529
|
|
530
|
//test species aggregates and species groups with infrageneric information
|
531
|
//TODO check if groups do ever have infrageneric epithets
|
532
|
nonViralName.setRank(Rank.SPECIESAGGREGATE());
|
533
|
nonViralName.setSpecificEpithet("myspecies");
|
534
|
nonViralName.setInfraGenericEpithet("Infragenus");
|
535
|
|
536
|
aggrNameCacheTagged = strategy.getInfraGenusTaggedNameCache(nonViralName);
|
537
|
aggrNameCache = TaggedCacheHelper.createString(aggrNameCacheTagged);
|
538
|
assertEquals("Species aggregate name should be 'Genus (Infragenus) myspecies aggr.'.", "Genus (Infragenus) myspecies aggr.", aggrNameCache);
|
539
|
|
540
|
aggrNameTitle = strategy.getTitleCache(nonViralName);
|
541
|
Assert.assertTrue("Species aggregate should not include author information.", aggrNameTitle.indexOf(author) == -1);
|
542
|
assertEquals("Species aggregate name should be 'Genus (Infragenus) myspecies aggr.'.", "Genus (Infragenus) myspecies aggr.", aggrNameTitle);
|
543
|
|
544
|
nonViralName.setRank(Rank.SPECIESGROUP());
|
545
|
groupNameTitle = strategy.getTitleCache(nonViralName);
|
546
|
assertEquals("Species group name should be 'Genus (Infragenus) myspecies species group'.", "Genus (Infragenus) myspecies species group", groupNameTitle);
|
547
|
|
548
|
//aggregates with author and nom.ref. information #4288
|
549
|
nonViralName.setRank(Rank.SPECIESAGGREGATE());
|
550
|
nonViralName.setSpecificEpithet("myspecies");
|
551
|
nonViralName.setInfraGenericEpithet(null);
|
552
|
nonViralName.setAuthorshipCache("L.");
|
553
|
|
554
|
aggrNameCacheTagged = strategy.getTaggedTitle(nonViralName);
|
555
|
aggrNameCache = TaggedCacheHelper.createString(aggrNameCacheTagged);
|
556
|
assertEquals("Species aggregate name should be 'Genus myspecies L.'.", "Genus myspecies L.", aggrNameCache);
|
557
|
|
558
|
}
|
559
|
|
560
|
@Test
|
561
|
public void testGetTaggedNameSpeciesAggregate() {
|
562
|
TaxonName speciesAggregate = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIESAGGREGATE());
|
563
|
speciesAggregate.setGenusOrUninomial("Mygenus");
|
564
|
speciesAggregate.setSpecificEpithet("myspecies");
|
565
|
List<TaggedText> taggedName = strategy.getTaggedName(speciesAggregate);
|
566
|
Assert.assertEquals("1rd tag must be genus epithet", "Mygenus", taggedName.get(0).getText());
|
567
|
Assert.assertEquals("2rd tag must be species epithet", "myspecies", taggedName.get(1).getText());
|
568
|
Assert.assertEquals("3rd tag must be aggregate marker", "aggr.",taggedName.get(2).getText());
|
569
|
}
|
570
|
|
571
|
@Test
|
572
|
public void testGetTaggedNameSubspecies(){
|
573
|
List<TaggedText> taggedName = strategy.getTaggedName(subSpeciesName);
|
574
|
Assert.assertEquals("First tag should be 'Abies'", "Abies", taggedName.get(0).getText());
|
575
|
Assert.assertEquals("Second tag should be 'alba'", "alba", taggedName.get(1).getText());
|
576
|
Assert.assertEquals("Third tag should be subspecies rank, and rank abbreviatioin should be subsp.", "subsp.", taggedName.get(2).getText());
|
577
|
Assert.assertEquals("Fourth tag should be 'beta'", "beta", taggedName.get(3).getText());
|
578
|
//to be continued
|
579
|
}
|
580
|
|
581
|
@Test
|
582
|
public void testTitleCacheHtmlTagged(){
|
583
|
HTMLTagRules rules = new HTMLTagRules().addRule(TagEnum.name, "i");
|
584
|
Assert.assertEquals("<i>Abies alba</i>", strategy.getTitleCache(speciesName, rules));
|
585
|
rules.addRule(TagEnum.name, "b");
|
586
|
Assert.assertEquals("<b><i>Abies alba</i></b>", strategy.getTitleCache(speciesName, rules));
|
587
|
speciesName.setCombinationAuthorship(author);
|
588
|
Assert.assertEquals("<b><i>Abies alba</i></b> L.", strategy.getTitleCache(speciesName, rules));
|
589
|
rules.addRule(TagEnum.authors, "i");
|
590
|
Assert.assertEquals("<b><i>Abies alba</i></b> <i>L.</i>", strategy.getTitleCache(speciesName, rules));
|
591
|
rules = new HTMLTagRules().addRule(TagEnum.name, "i").addRule(TagEnum.name, "b").addRule(TagEnum.authors, "b");
|
592
|
Assert.assertEquals("<b><i>Abies alba</i> L.</b>", strategy.getTitleCache(speciesName, rules));
|
593
|
}
|
594
|
|
595
|
@Test //#2888
|
596
|
public void testAutonymWithExAuthor(){
|
597
|
IBotanicalName name = TaxonNameFactory.NewBotanicalInstance(Rank.FORM());
|
598
|
name.setGenusOrUninomial("Euphorbia");
|
599
|
name.setSpecificEpithet("atropurpurea");
|
600
|
name.setInfraSpecificEpithet("atropurpurea");
|
601
|
Team combTeam = Team.NewTitledInstance("Combauthor", "Combauthor");
|
602
|
name.setCombinationAuthorship(combTeam);
|
603
|
Team exCombTeam = Team.NewTitledInstance("Excomb", "Excomb");
|
604
|
name.setExCombinationAuthorship(exCombTeam);
|
605
|
|
606
|
Assert.assertEquals("", "Euphorbia atropurpurea Excomb ex Combauthor f. atropurpurea", name.getTitleCache());
|
607
|
}
|
608
|
|
609
|
@Test //#6656
|
610
|
public void testAutonymHybrids(){
|
611
|
IBotanicalName name = TaxonNameFactory.NewBotanicalInstance(Rank.SUBSPECIES());
|
612
|
name.setGenusOrUninomial("Ophrys");
|
613
|
name.setSpecificEpithet("kastelli");
|
614
|
name.setInfraSpecificEpithet("kastelli");
|
615
|
Team combTeam = Team.NewTitledInstance("E. Klein", "E. Klein");
|
616
|
name.setCombinationAuthorship(combTeam);
|
617
|
name.setBinomHybrid(true);
|
618
|
name.setTrinomHybrid(true);
|
619
|
|
620
|
String expected = String.format("Ophrys %skastelli E. Klein nothosubsp. kastelli", UTF8.HYBRID.toString());
|
621
|
Assert.assertEquals("", expected, name.getTitleCache());
|
622
|
}
|
623
|
}
|