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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.database.update.v47_49;
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import java.util.ArrayList;
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import java.util.List;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.database.update.ISchemaUpdater;
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import eu.etaxonomy.cdm.database.update.ISchemaUpdaterStep;
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import eu.etaxonomy.cdm.database.update.SchemaUpdaterBase;
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import eu.etaxonomy.cdm.database.update.v41_47.SchemaUpdater_41_47;
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/**
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/**
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* @author a.mueller
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* @date 09.06.2017
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*
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*/
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public class SchemaUpdater_47_49 extends SchemaUpdaterBase {
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(SchemaUpdater_47_49.class);
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private static final String endSchemaVersion = "4.9.0.0.20170710";
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private static final String startSchemaVersion = "4.7.0.0.201710040000";
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// ********************** FACTORY METHOD *************************************
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public static SchemaUpdater_47_49 NewInstance() {
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return new SchemaUpdater_47_49();
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}
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/**
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* @param startSchemaVersion
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* @param endSchemaVersion
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*/
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protected SchemaUpdater_47_49() {
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super(startSchemaVersion, endSchemaVersion);
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}
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@Override
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protected List<ISchemaUpdaterStep> getUpdaterList() {
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String stepName;
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String tableName;
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ISchemaUpdaterStep step;
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String newColumnName;
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List<ISchemaUpdaterStep> stepList = new ArrayList<>();
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//remove remaining PolytomousKeyNodes (#6705)
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//delete term version from CdmMetaData (#6699)
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//make all microreferences OriginalSources (#6581) - startet with TaxonName.nomRef
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// //#5149 remove unique index on Sequence_Reference.citations_id
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// tableName = "Sequence_Reference";
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// String columnName = "citations_id";
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// step = UniqueIndexDropper.NewInstance(tableName, columnName, !INCLUDE_AUDIT);
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// stepList.add(step);
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//
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//
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// //#6340 nom status invalid updater
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// step = NomStatusInvalidUpdater.NewInstance();
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// stepList.add(step);
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//
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// //#6529
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// //Extend WorkingSet to allow a more fine grained definiton of taxon set
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// //min rank
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// stepName = "Add minRank column";
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// tableName = "WorkingSet";
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// newColumnName = "minRank_id";
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// String referencedTable = "DefinedTermBase";
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// step = ColumnAdder.NewIntegerInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT, !NOT_NULL, referencedTable);
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// stepList.add(step);
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//
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// //max rank
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// stepName = "Add maxRank column";
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// tableName = "WorkingSet";
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// newColumnName = "maxRank_id";
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// referencedTable = "DefinedTermBase";
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// step = ColumnAdder.NewIntegerInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT, !NOT_NULL, referencedTable);
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// stepList.add(step);
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//
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// //subtree filter
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// stepName= "Add geo filter MN table to WorkingSet";
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// String firstTableName = "WorkingSet";
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// String secondTableAlias = "NamedArea";
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// String secondTableName = "DefinedTermBase";
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// String attributeName = "geoFilter";
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// boolean isList = ! IS_LIST;
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// step = MnTableCreator.NewMnInstance(stepName, firstTableName, null, secondTableName, secondTableAlias, attributeName, INCLUDE_AUDIT, isList, IS_M_TO_M);
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// stepList.add(step);
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//
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// //subtree filter
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// stepName= "Add subtree filter MN table to WorkingSet";
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// firstTableName = "WorkingSet";
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// secondTableName = "TaxonNode";
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// secondTableAlias = null;
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// attributeName = "taxonSubtreeFilter";
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// isList = ! IS_LIST;
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// step = MnTableCreator.NewMnInstance(stepName, firstTableName, null, secondTableName, secondTableAlias, attributeName, INCLUDE_AUDIT, isList, IS_M_TO_M);
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// stepList.add(step);
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//
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// //#6258
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// stepName = "Add Registration table";
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// tableName = "Registration";
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// String[] columnNames = new String[]{"identifier","specificIdentifier","registrationDate","status",
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// "institution_id","name_id","submitter_id"};
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// String[] referencedTables = new String[]{null, null, null, null,
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// "AgentBase","TaxonNameBase","UserAccount"};
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// String[] columnTypes = new String[]{"string_255","string_255","datetime","string_10","int","int","int"};
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// step = TableCreator.NewAnnotatableInstance(stepName, tableName,
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// columnNames, columnTypes, referencedTables, INCLUDE_AUDIT);
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// stepList.add(step);
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//
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// //add blockedBy_id
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// stepName= "Add blockedBy_id to Registration";
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// firstTableName = "Registration";
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// secondTableName = "Registration";
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// attributeName = "blockedBy";
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// isList = ! IS_LIST;
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// step = MnTableCreator.NewMnInstance(stepName, firstTableName, null, secondTableName, null, attributeName, INCLUDE_AUDIT, isList, IS_M_TO_M);
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// stepList.add(step);
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//
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// //add type designations
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// stepName= "Add type designations to Registration";
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// firstTableName = "Registration";
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// String firstColumnName = "registrations";
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// secondTableName = "TypeDesignationBase";
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// attributeName = "typeDesignations";
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// isList = false;
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// step = MnTableCreator.NewMnInstance(stepName, firstTableName, null, firstColumnName, secondTableName, null, attributeName, INCLUDE_AUDIT, isList, IS_M_TO_M);
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// stepList.add(step);
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//
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// //#5258
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// //Add "accessed" to Reference
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// stepName = "Add 'accessed' to Reference";
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// tableName = "Reference";
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// newColumnName = "accessed";
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// step = ColumnAdder.NewDateTimeInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT, !NOT_NULL);
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// stepList.add(step);
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//
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// //#6618 Add structure column to DefinedTermBase (Character)
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// stepName = "Add structure column to DefinedTermBase (Character)";
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// tableName = "DefinedTermBase";
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// newColumnName = "structure_id";
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// referencedTable = "FeatureNode";
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// step = ColumnAdder.NewIntegerInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT, !NOT_NULL, referencedTable);
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// stepList.add(step);
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//
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// //#6618 Add property column to DefinedTermBase (Character)
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// stepName = "Add property column to DefinedTermBase (Character)";
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// tableName = "DefinedTermBase";
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// newColumnName = "property_id";
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// referencedTable = "FeatureNode";
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// step = ColumnAdder.NewIntegerInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT, !NOT_NULL, referencedTable);
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// stepList.add(step);
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//
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// //##6661 Add initials to agent base
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// stepName = "Add initials to AgentBase";
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// tableName = "AgentBase";
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// newColumnName = "initials";
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// int length = 80;
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// step = ColumnAdder.NewStringInstance(stepName, tableName, newColumnName, length, INCLUDE_AUDIT);
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// stepList.add(step);
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//
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// stepName = "Update initials and firstname";
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// step = InitialsUpdater.NewInstance();
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// stepList.add(step);
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//
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// //#6663
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// //Add "lastRetrieved" to Reference
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// stepName = "Add 'lastRetrieved' to Reference";
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// tableName = "Reference";
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// newColumnName = "lastRetrieved";
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// step = ColumnAdder.NewDateTimeInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT, !NOT_NULL);
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// stepList.add(step);
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//
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// stepName = "Add externalId to Reference";
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// tableName = "Reference";
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// newColumnName = "externalId";
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// length = 255;
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// step = ColumnAdder.NewStringInstance(stepName, tableName, newColumnName, length, INCLUDE_AUDIT);
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// stepList.add(step);
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//
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// stepName = "Add externalLink to Reference";
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// tableName = "Reference";
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// newColumnName = "externalLink";
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// step = ColumnAdder.NewClobInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT);
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// stepList.add(step);
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//
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// stepName = "Add authorityType to Reference";
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// tableName = "Reference";
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// newColumnName = "authorityType";
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// length = 10;
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// step = ColumnAdder.NewStringInstance(stepName, tableName, newColumnName, length, INCLUDE_AUDIT);
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// stepList.add(step);
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//
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// //#6472 add key to IntextReference
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// stepName = "Add key to IntextReference";
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// tableName = "IntextReference";
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// newColumnName = "key_id";
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// referencedTable = "PolytomousKey";
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// step = ColumnAdder.NewIntegerInstance(stepName, tableName, newColumnName, INCLUDE_AUDIT, !NOT_NULL, referencedTable);
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// stepList.add(step);
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//
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// //#5817 rename relationshipTermBase_inverseRepresentation
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// stepName = "Rename relationshipTermBase_inverseRepresentation";
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// String oldName = "RelationshipTermBase_inverseRepresentation";
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// String newName = "TermBase_inverseRepresentation";
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// step = TableNameChanger.NewInstance(stepName, oldName, newName, INCLUDE_AUDIT);
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// stepList.add(step);
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//
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// //#5817 rename TermBase_inverseRepresentation.relationshipTermBase_id
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// stepName = "Rename relationshipTermBase_inverseRepresentation.relationshipTermBase_id";
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// tableName = newName;
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// String oldColumnName = "relationshipTermBase_id";
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// newColumnName = "term_id";
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// step = ColumnNameChanger.NewIntegerInstance(stepName, tableName, oldColumnName, newColumnName, INCLUDE_AUDIT);
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// stepList.add(step);
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//
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// //#6226 remove orphaned PolytomousKeyNodes
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// stepName = "remove orphaned PolytomousKeyNodes";
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// String query = " DELETE FROM @@PolytomousKeyNode@@ WHERE key_id NOT IN (SELECT id FROM @@PolytomousKey@@)";
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// String aud_query = " DELETE FROM @@PolytomousKeyNode_AUD@@ WHERE key_id NOT IN (SELECT id FROM @@PolytomousKey_AUD@@)";
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// step = SimpleSchemaUpdaterStep.NewExplicitAuditedInstance(stepName, query, aud_query, -99);
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// stepList.add(step);
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return stepList;
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}
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@Override
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public ISchemaUpdater getNextUpdater() {
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return null;
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}
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@Override
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public ISchemaUpdater getPreviousUpdater() {
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return SchemaUpdater_41_47.NewInstance();
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}
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}
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initialize CDM 4.9 schema update