EDIT

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.model.name;

import java.util.Map;

import javax.persistence.Column;

import javax.persistence.Entity;

import javax.persistence.Transient;

import javax.xml.bind.annotation.XmlAccessType;

import javax.xml.bind.annotation.XmlAccessorType;

import javax.xml.bind.annotation.XmlElement;

import javax.xml.bind.annotation.XmlRootElement;

import javax.xml.bind.annotation.XmlType;

import org.apache.commons.lang.StringUtils;

import org.apache.log4j.Logger;

import org.hibernate.envers.Audited;

import org.hibernate.search.annotations.Field;

import org.hibernate.search.annotations.Indexed;

import org.springframework.beans.factory.annotation.Configurable;

import eu.etaxonomy.cdm.common.CdmUtils;

import eu.etaxonomy.cdm.model.common.CdmBase;

import eu.etaxonomy.cdm.strategy.cache.name.INameCacheStrategy;

/**

 * The taxon name class for viral taxa. The scientific name will be stored

 * as a string (consisting eventually of several words even combined also with

 * non alphabetical characters) in the inherited {@link eu.etaxonomy.cdm.model.common.IdentifiableEntity#setTitleCache(String) titleCache} attribute.

 * Classification has no influence on the names of viral taxon names and no

 * viral taxon must be taxonomically included in another viral taxon with

 * higher rank. For examples see ICTVdb:

 * "http://www.ncbi.nlm.nih.gov/ICTVdb/Ictv/vn_indxA.htm"

 * <P>

 * This class corresponds to: NameViral according to the ABCD schema.

 *

 * @author m.doering

 * @version 1.0

 * @created 08-Nov-2007 13:07:02

 */

@XmlAccessorType(XmlAccessType.FIELD)

@XmlType(name = "", propOrder = {

    "acronym"

})

@XmlRootElement(name = "ViralName")

@Entity

@Indexed(index = "eu.etaxonomy.cdm.model.name.TaxonNameBase")

@Audited

@Configurable

public class ViralName extends TaxonNameBase<ViralName, INameCacheStrategy<ViralName>> implements Cloneable {

	private static final long serialVersionUID = 4516625507432071817L;

	private static final Logger logger = Logger.getLogger(ViralName.class);

//    @XmlTransient

//    @Transient

//	protected INameCacheStrategy<ViralName> cacheStrategy;

	@XmlElement(name = "Acronym")

	@Field

    //TODO Val #3379

//	@NullOrNotEmpty

	@Column(length=255)

	private String acronym;

	// ************* CONSTRUCTORS *************/

	protected ViralName(){

		super();

	}

	/**

	 * Class constructor: creates a new viral taxon name instance

	 * only containing its {@link Rank rank}.

	 *

	 * @param	rank  the rank to be assigned to <i>this</i> viral taxon name

	 * @see 	TaxonNameBase#TaxonNameBase(Rank)

	 */

	public ViralName(Rank rank) {

		super(rank);

	}

//***********************

	private static Map<String, java.lang.reflect.Field> allFields = null;

	@Override

    protected Map<String, java.lang.reflect.Field> getAllFields(){

    	if (allFields == null){

			allFields = CdmUtils.getAllFields(this.getClass(), CdmBase.class, false, false, false, true);

		}

    	return allFields;

    }

//*************************

	//********* METHODS **************************************/

	/**

	 * Creates a new viral taxon name instance only containing its {@link Rank rank}.

	 *

	 * @param	rank  the rank to be assigned to <i>this</i> viral taxon name

	 * @see 	#ViralName(Rank)

	 */

	public static ViralName NewInstance(Rank rank){

		return new ViralName(rank);

	}

	/**

	 * Returns the accepted acronym (an assigned abbreviation) string for <i>this</i>

	 * viral taxon name. For instance PCV stays for Peanut Clump Virus.

	 *

	 * @return  the string containing the accepted acronym of <i>this</i> viral taxon name

	 */

	public String getAcronym(){

		return this.acronym;

	}

	/**

	 * @see  #getAcronym()

	 */

	public void setAcronym(String acronym){

		this.acronym = StringUtils.isBlank(acronym)? null : acronym;

	}

	/**

	 * Generates and returns the string with the scientific name of <i>this</i>

	 * viral taxon name. This string may be stored in the inherited

	 * {@link eu.etaxonomy.cdm.model.common.IdentifiableEntity#getTitleCache() titleCache} attribute.

	 * This method overrides the generic and inherited

	 * method from {@link TaxonNameBase TaxonNameBase} .

	 *

	 * @return  the string with the composed name of <i>this</i> viral taxon name with authorship (and maybe year)

	 * @see  	eu.etaxonomy.cdm.model.common.IdentifiableEntity#generateTitle()

	 * @see  	eu.etaxonomy.cdm.model.common.IdentifiableEntity#getTitleCache()

	 * @see  	TaxonNameBase#generateTitle()

	 */

//	@Override

//	public String generateTitle(){

//		logger.warn("not yet implemented");

//		return this.toString();

//	}

	@Override

	public String generateFullTitle(){

		logger.warn("not yet implemented");

		return this.toString();

	}

	/**

	 * Returns the boolean value "true" if the components of <i>this</i> viral taxon name

	 * follow the rules of the corresponding

	 * {@link NomenclaturalCode International Code of Virus Classification and Nomenclature},

	 * "false" otherwise.

	 * This method overrides and implements the isCodeCompliant method from

	 * the abstract {@link TaxonNameBase#isCodeCompliant() TaxonNameBase} class.

	 *

	 * @return  the boolean value expressing the compliance of <i>this</i> viral taxon name to its nomenclatural code

	 * @see	   	TaxonNameBase#isCodeCompliant()

	 */

	@Override

	@Transient

	public boolean isCodeCompliant() {

		logger.warn("not yet implemented");

		return false;

	}

	/**

	 * Returns the {@link NomenclaturalCode nomenclatural code} that governs

	 * the construction of <i>this</i> viral taxon name, that is the

	 * International Code of Virus Classification and Nomenclature.

	 * This method overrides the getNomenclaturalCode method from {@link TaxonNameBase TaxonNameBase}.

	 *

	 * @return  the nomenclatural code for viruses

	 * @see  	#isCodeCompliant()

	 * @see  	TaxonNameBase#getHasProblem()

	 * @see  	TaxonNameBase#getNomenclaturalCode()

	 */

	@Override

	public NomenclaturalCode getNomenclaturalCode(){

		return NomenclaturalCode.ICVCN;

	}

	/**

	 * Returns the {@link eu.etaxonomy.cdm.strategy.cache.name.INameCacheStrategy cache strategy} used to generate

	 * several strings corresponding to <i>this</i> viral taxon name.

	 *

	 * @return  the cache strategy used for <i>this</i> viral taxon name

	 * @see 	eu.etaxonomy.cdm.strategy.cache.name.INameCacheStrategy

	 * @see     eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy

	 */

//	@Override

//	@Transient

//	public INameCacheStrategy getCacheStrategy() {

//		return cacheStrategy;

//	}

	/**

	 * @see  #getCacheStrategy()

	 */

//	@Override

//	public void setCacheStrategy(INameCacheStrategy cacheStrategy) {

//		this.cacheStrategy = cacheStrategy;

//	}

//*********************** CLONE ********************************************************/

	/**

	 * Clones <i>this</i> viral name. This is a shortcut that enables to create

	 * a new instance that differs only slightly from <i>this</i> viral name by

	 * modifying only some of the attributes.

	 *

	 * @see eu.etaxonomy.cdm.model.name.TaxonNameBase#clone()

	 * @see java.lang.Object#clone()

	 */

	@Override

	public Object clone() {

		ViralName result = (ViralName)super.clone();

		//no changes to: acronym

		return result;

	}

}