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package eu.etaxonomy.cdm.remote.dto.occurrencecatalogue;
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import java.util.ArrayList;
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import java.util.List;
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import java.util.Set;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
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import eu.etaxonomy.cdm.model.common.IdentifiableSource;
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import eu.etaxonomy.cdm.model.common.TimePeriod;
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import eu.etaxonomy.cdm.model.location.Point;
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import eu.etaxonomy.cdm.model.media.Rights;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
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import eu.etaxonomy.cdm.remote.controller.BaseListController;
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import eu.etaxonomy.cdm.remote.dto.common.RemoteResponse;
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/**
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* The class representing the response from the CDM Remote Web Service API to a single UUID search query.
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* All information contained in this class originates from a call to {@link SpecimenOrObservationBase}
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* <P>
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*
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* @author p.kelbert
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* @since march 10 2014
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*/
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public class OccurrenceSearch implements RemoteResponse {
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private OccurrenceSearchRequest request;
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private final List<OccurrenceSearchResponse> response;
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public static final Logger logger = Logger.getLogger(BaseListController.class);
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public OccurrenceSearch() {
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this.response = new ArrayList<OccurrenceSearchResponse>();
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}
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public void setRequest(String q) {
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request = new OccurrenceSearchRequest();
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request.setQuery(q);
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}
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public OccurrenceSearchRequest getRequest() {
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return this.request;
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}
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public class OccurrenceSearchRequest {
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private String taxonUuid;
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public OccurrenceSearchRequest() {
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this.taxonUuid = "";
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}
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public void setQuery(String q) {
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this.taxonUuid = q;
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}
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public String getQuery() {
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return this.taxonUuid;
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}
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}
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public void addToResponse(String acceptedTaxon,
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String acceptedTaxonUuid,
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DerivedUnitFacade duf) {
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OccurrenceSearch.OccurrenceSearchResponse osr =
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new OccurrenceSearch.OccurrenceSearchResponse();
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osr.setAcceptedTaxon(acceptedTaxon);
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osr.setAcceptedTaxonUuid(acceptedTaxonUuid);
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if(duf.getCollector() != null) {
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osr.setCollector(duf.getCollector().getTitleCache());
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}
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if(duf.getCollection() != null) {
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osr.setCollection(duf.getCollection().getName());
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if(duf.getCollection().getInstitute() != null) {
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osr.setInstitution(duf.getCollection().getInstitute().getName());
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}
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}
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osr.setFieldNotes(duf.getFieldNotes());
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if(duf.getType() != null) {
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osr.setType(duf.getType().name());
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}
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osr.setUnitCount(duf.getIndividualCount());
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if(duf.getDerivedUnitKindOfUnit() != null) {
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osr.setKindOfUnit(duf.getDerivedUnitKindOfUnit().getLabel());
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}
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osr.setElevation(duf.getAbsoluteElevation());
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osr.setMaxElevation(duf.getAbsoluteElevationMaximum());
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osr.setDepth(duf.getDistanceToGround());
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osr.setMaxDepth(duf.getDistanceToGroundMax());
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if(duf.getGatheringPeriod() != null) {
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TimePeriod tp = duf.getGatheringPeriod();
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if(tp.getStart() != null) {
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osr.setStartGatheringDate(tp.getStart().toString());
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}
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if(tp.getEnd() != null) {
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osr.setEndGatheringDate(tp.getEnd().toString());
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}
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}
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OccurrenceSearch.OccurrenceSearchResponse.Location loc =
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osr.getLocation();
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Point exactLocation = duf.getExactLocation();
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if(exactLocation != null) {
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loc.setDecimalLatitude(exactLocation.getLatitude());
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loc.setDecimalLongitude(exactLocation.getLongitude());
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loc.setErrorRadius(exactLocation.getErrorRadius());
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if(exactLocation.getReferenceSystem() != null) {
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loc.setReferenceSystem(exactLocation.getReferenceSystem().getTitleCache());
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}
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}
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if(duf.getCountry() != null) {
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loc.setCountry(duf.getCountry().getTitleCache());
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}
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if(duf.getLocality() != null) {
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loc.setLocality(duf.getLocality().getText());
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}
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osr.setFieldNumber(duf.getFieldNumber());
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osr.setAccessionNumber(duf.getAccessionNumber());
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osr.setCatalogNumber(duf.getCatalogNumber());
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Set<IdentifiableSource> sources = duf.getSources();
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boolean dateFound = false;
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String datePublishedString = null;
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List<String> sourceTitleList = new ArrayList<String>();
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for (IdentifiableSource source:sources) {
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String citation = source.getCitation().getTitleCache();
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datePublishedString = source.getCitation().getDatePublishedString();
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if (!dateFound && !StringUtils.isEmpty(datePublishedString)){
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osr.setPublicationDate(datePublishedString);
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dateFound=true;
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}
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String micro = source.getCitationMicroReference();
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if(citation == null) {
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citation = "";
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}
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if(micro == null) {
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micro = "";
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}
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sourceTitleList.add(citation + " " + micro);
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}
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osr.setSources(sourceTitleList);
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osr.setPublicationDate(datePublishedString);
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List<String> rightsTextList = new ArrayList<String>();
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Set<Rights> rightsSet = duf.innerDerivedUnit().getRights();
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for(Rights rights : rightsSet) {
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if(rights.getAbbreviatedText() != null) {
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rightsTextList.add(rights.getAbbreviatedText());
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}
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}
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osr.setRights(rightsTextList);
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response.add(osr);
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}
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public List<OccurrenceSearchResponse> getResponse() {
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return this.response;
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}
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public OccurrenceSearchResponse createResponse(DerivedUnitFacade duFacade) {
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OccurrenceSearch.OccurrenceSearchResponse osResponse =
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new OccurrenceSearch.OccurrenceSearchResponse();
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return osResponse;
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}
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public class OccurrenceSearchResponse {
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private String acceptedTaxon;
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private String acceptedTaxonUuid;
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private String collector;
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private String collection;
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private String institution;
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private String fieldNotes;
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//
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private String type;
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private String unitCount;
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private String kindOfUnit;
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//ELEVATION
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private Object elevation;
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private Object maxElevation;
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//DEPTH
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private Object depth;
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private Object maxDepth;
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private String startGatherinDate;
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private String endGatheringDate;
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private Location location;
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private String fieldNumber;
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private String accessionNumber;
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private String catalogNumber;
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private String barcode;
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private String publicationDate;
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private List<String> rights;
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private List<String> sources;
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//FIXME: Ignoring the fields below for the moment
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// Will come back to them when requested and
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// when the model allows it properly
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// private String citation;
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public OccurrenceSearchResponse() {
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location = new Location();
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rights = new ArrayList<String>();
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sources = new ArrayList<String>();
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}
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/**
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* @return the specimenOrObservationType
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*/
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public String getType() {
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return type;
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}
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/**
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* @param specimenOrObservationType the specimenOrObservationType to set
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*/
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public void setType(String type) {
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this.type = type;
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}
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/**
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* @return the acceptedTaxon
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*/
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public String getAcceptedTaxon() {
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return acceptedTaxon;
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}
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/**
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* @param acceptedTaxon the acceptedTaxon to set
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*/
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public void setAcceptedTaxon(String acceptedTaxon) {
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if (acceptedTaxon !=null) {
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this.acceptedTaxon = acceptedTaxon.split(" sec.")[0];
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} else {
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this.acceptedTaxon = acceptedTaxon;
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}
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}
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/**
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* @return the collector
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*/
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public String getCollector() {
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return collector;
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}
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/**
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* @param collector the collector to set
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*/
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public void setCollector(String collector) {
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this.collector = collector;
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}
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/**
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* @param acceptedTaxonUuid the acceptedTaxonUuid to set
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*/
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public void setAcceptedTaxonUuid(String acceptedTaxonUuid) {
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this.acceptedTaxonUuid = acceptedTaxonUuid;
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}
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/**
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* @return the nameUuid
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*/
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public String getAcceptedTaxonUuid() {
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return acceptedTaxonUuid;
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}
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/**
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* @return the accessionNumber
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*/
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public String getAccessionNumber() {
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return accessionNumber;
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}
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/**
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* @param accessionNumber the accessionNumber to set
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*/
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public void setAccessionNumber(String accessionNumber) {
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this.accessionNumber = accessionNumber;
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}
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/**
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* @return the catalogNumber
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*/
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public String getCatalogNumber() {
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return catalogNumber;
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}
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/**
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* @param catalogNumber the catalogNumber to set
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*/
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public void setCatalogNumber(String catalogNumber) {
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this.catalogNumber = catalogNumber;
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}
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/**
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* @return the fieldNumber
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*/
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public String getFieldNumber() {
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return fieldNumber;
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}
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/**
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* @param fieldNumber the fieldNumber to set
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*/
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public void setFieldNumber(String fieldNumber) {
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this.fieldNumber = fieldNumber;
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}
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/**
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* @return the minElevation
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*/
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public Object getElevation() {
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return elevation;
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}
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/**
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* @param minElevation the minElevation to set
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*/
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public void setElevation(Integer elevation) {
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this.elevation = elevation;
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}
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/**
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* @return the maxElevation
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*/
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public Object getMaxElevation() {
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return maxElevation;
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}
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/**
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* @param maxElevation the maxElevation to set
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*/
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public void setMaxElevation(Integer maxElevation) {
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this.maxElevation = maxElevation;
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}
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/**
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* @return the dateBegin
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*/
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public String getStartGatheringDate() {
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return startGatherinDate;
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}
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/**
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* @param dateBegin the dateBegin to set
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*/
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public void setStartGatheringDate(String dateBegin) {
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this.startGatherinDate = dateBegin;
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}
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/**
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* @return the dateEnd
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*/
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public String getEndGatheringDate() {
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return endGatheringDate;
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}
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/**
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* @param dateEnd the dateEnd to set
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*/
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public void setEndGatheringDate(String dateEnd) {
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this.endGatheringDate = dateEnd;
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}
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/**
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* @return the unitCount
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*/
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public String getUnitCount() {
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return unitCount;
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}
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/**
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* @param unitCount the unitCount to set
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*/
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public void setUnitCount(String unitCount) {
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this.unitCount = unitCount;
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}
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/**
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* @return the barcode
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*/
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public String getBarcode() {
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return barcode;
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}
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/**
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* @param barcode the barcode to set
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*/
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public void setBarcode(String barcode) {
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this.barcode = barcode;
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}
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public String getPublicationDate() {
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return publicationDate;
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}
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public void setPublicationDate(String publicationDate) {
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this.publicationDate = publicationDate;
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}
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/**
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* @return the kindOfUnit
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*/
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public String getKindOfUnit() {
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return kindOfUnit;
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}
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/**
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* @param kindOfUnit the kindOfUnit to set
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*/
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public void setKindOfUnit(String kindOfUnit) {
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this.kindOfUnit = kindOfUnit;
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}
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/**
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* @return the sources
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*/
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public List<String> getSources() {
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return sources;
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}
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457
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/**
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* @param sources the sources to set
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*/
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public void setSources(List<String> sources) {
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this.sources = sources;
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}
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/**
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* @return the collection
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*/
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public String getCollection() {
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return collection;
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}
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/**
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* @param collection the collection to set
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*/
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public void setCollection(String collection) {
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this.collection = collection;
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}
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/**
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* @return the institution
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*/
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public String getInstitution() {
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return institution;
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}
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485
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/**
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* @param institution the institution to set
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*/
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public void setInstitution(String institution) {
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this.institution = institution;
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}
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/**
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* @return the depth
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*/
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495
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public Object getDepth() {
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return depth;
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}
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499
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/**
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* @param depth the depth to set
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*/
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502
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public void setDepth(Double depth) {
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this.depth = depth;
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}
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505
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506
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/**
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* @return the maxDepth
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*/
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509
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public Object getMaxDepth() {
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510
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return maxDepth;
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}
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513
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/**
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514
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* @param maxDepth the maxDepth to set
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515
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*/
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516
|
public void setMaxDepth(Double maxDepth) {
|
517
|
this.maxDepth = maxDepth;
|
518
|
}
|
519
|
|
520
|
/**
|
521
|
* @return the fieldNotes
|
522
|
*/
|
523
|
public String getFieldNotes() {
|
524
|
return fieldNotes;
|
525
|
}
|
526
|
|
527
|
/**
|
528
|
* @param fieldNotes the fieldNotes to set
|
529
|
*/
|
530
|
public void setFieldNotes(String fieldNotes) {
|
531
|
this.fieldNotes = fieldNotes;
|
532
|
}
|
533
|
|
534
|
// /**
|
535
|
// * @return the dataResourceCitation
|
536
|
// */
|
537
|
// public String getCitation() {
|
538
|
// return citation;
|
539
|
// }
|
540
|
//
|
541
|
// /**
|
542
|
// * @param dataResourceCitation the dataResourceCitation to set
|
543
|
// */
|
544
|
// public void setCitation(String citation) {
|
545
|
// this.citation = citation;
|
546
|
// }
|
547
|
|
548
|
/**
|
549
|
* @return the dataResourceRights
|
550
|
*/
|
551
|
public List<String> getRights() {
|
552
|
return rights;
|
553
|
}
|
554
|
|
555
|
/**
|
556
|
* @param dataResourceRights the dataResourceRights to set
|
557
|
*/
|
558
|
public void setRights(List<String> rights) {
|
559
|
this.rights = rights;
|
560
|
}
|
561
|
|
562
|
public Location getLocation() {
|
563
|
return location;
|
564
|
}
|
565
|
|
566
|
public void setLocation(Location location) {
|
567
|
this.location = location;
|
568
|
}
|
569
|
|
570
|
public class Location {
|
571
|
private Object decimalLatitude;
|
572
|
private Object decimalLongitude;
|
573
|
private Object errorRadius;
|
574
|
private String country;
|
575
|
private String locality;
|
576
|
private String referenceSystem;
|
577
|
|
578
|
public Object getDecimalLatitude() {
|
579
|
return decimalLatitude;
|
580
|
}
|
581
|
public void setDecimalLatitude(Double decimalLatitude) {
|
582
|
this.decimalLatitude = decimalLatitude;
|
583
|
}
|
584
|
public Object getDecimalLongitude() {
|
585
|
return decimalLongitude;
|
586
|
}
|
587
|
public void setDecimalLongitude(Double decimalLongitude) {
|
588
|
this.decimalLongitude = decimalLongitude;
|
589
|
}
|
590
|
public Object getErrorRadius() {
|
591
|
return errorRadius;
|
592
|
}
|
593
|
public void setErrorRadius(Integer errorRadius) {
|
594
|
this.errorRadius = errorRadius;
|
595
|
}
|
596
|
public String getCountry() {
|
597
|
return country;
|
598
|
}
|
599
|
public void setCountry(String country) {
|
600
|
this.country = country;
|
601
|
}
|
602
|
public String getLocality() {
|
603
|
return locality;
|
604
|
}
|
605
|
public void setLocality(String locality) {
|
606
|
this.locality = locality;
|
607
|
}
|
608
|
public String getReferenceSystem() {
|
609
|
return referenceSystem;
|
610
|
}
|
611
|
public void setReferenceSystem(String referenceSystem) {
|
612
|
this.referenceSystem = referenceSystem;
|
613
|
}
|
614
|
|
615
|
}
|
616
|
|
617
|
}
|
618
|
|
619
|
}
|