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/**
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* Copyright (C) 2019 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.api.service;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertNotNull;
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import static org.junit.Assert.assertNull;
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import static org.junit.Assert.assertTrue;
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import java.io.FileNotFoundException;
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import java.util.Arrays;
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import java.util.Collection;
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import java.util.HashSet;
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import java.util.List;
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import java.util.UUID;
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import org.junit.Test;
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import org.springframework.beans.factory.annotation.Qualifier;
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import org.unitils.dbunit.annotation.DataSet;
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import org.unitils.spring.annotation.SpringBeanByType;
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import eu.etaxonomy.cdm.api.application.ICdmRepository;
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import eu.etaxonomy.cdm.api.service.pager.Pager;
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import eu.etaxonomy.cdm.model.name.NameTypeDesignation;
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import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.Registration;
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import eu.etaxonomy.cdm.model.name.RegistrationStatus;
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation;
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.model.name.TaxonNameFactory;
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import eu.etaxonomy.cdm.model.permission.User;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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import eu.etaxonomy.cdm.persistence.permission.Role;
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import eu.etaxonomy.cdm.persistence.query.OrderHint;
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import eu.etaxonomy.cdm.persistence.query.OrderHint.SortOrder;
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import eu.etaxonomy.cdm.test.integration.CdmTransactionalIntegrationTestWithSecurity;
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/**
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* @author a.kohlbecker
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* @since Jun 28, 2019
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*/
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public class RegistrationServiceTest extends CdmTransactionalIntegrationTestWithSecurity {
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public static final UUID USER2_UUID = UUID.fromString("669f582c-e97f-425b-97f6-bc3b0c08f2a5");
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public static final UUID USER1_UUID = UUID.fromString("68033f81-9947-4b61-b33b-3d05bd438579");
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public static final UUID NDT1_UUID = UUID.fromString("be66964a-ea2b-480e-9dcf-0ee1dd7313eb");
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public static final UUID STD2_UUID = UUID.fromString("8cd056fb-259a-45aa-ab4f-b34033eef2e9");
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public static final UUID STD1_UUID = UUID.fromString("1c29e80a-2611-4be4-9b2f-15bbd15066bf");
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public static final UUID NAME1_UUID = UUID.fromString("6ffa3217-f520-43d9-99d7-755b8c11d049");
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public static final UUID NAME2_UUID = UUID.fromString("c739163e-c1fa-4ea6-b992-78fe050a6d2c");
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public static final UUID NAME3_UUID = UUID.fromString("fdcaf5a8-aa6d-4f5c-86e5-6e3d93dc0c72");
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@SpringBeanByType
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@Qualifier("CdmRepository")
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private ICdmRepository repo;
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@Test
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@DataSet
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public void testPageWithPatternFilters(){
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OrderHint orderBySpecificIdentifier = new OrderHint("specificIdentifier", SortOrder.ASCENDING);
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// OrderHint orderById = new OrderHint("id", SortOrder.ASCENDING);
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repo.authenticate("user1", "00000");
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Pager<Registration> pager;
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pager = repo.getRegistrationService().page((UUID)null, null, null, null, null, null, null, null, null, null);
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assertEquals(pager.getRecords().size(), pager.getCount().intValue());
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assertEquals("with authenticated user expecting all 4 Registrations", 4l, pager.getCount().longValue());
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pager = repo.getRegistrationService().page(USER1_UUID, null, null, null, null, null, null, null, null, null);
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assertEquals(2l, pager.getCount().longValue());
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pager = repo.getRegistrationService().page(USER2_UUID, null, null, null, null, null, null, null, null, null);
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assertEquals(2l, pager.getCount().longValue());
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// status filter
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pager = repo.getRegistrationService().page((UUID)null, Arrays.asList(RegistrationStatus.PREPARATION), null, null, null, null, null, null, null, null);
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assertEquals(1l, pager.getCount().longValue());
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assertEquals(RegistrationStatus.PREPARATION, pager.getRecords().get(0).getStatus());
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pager = repo.getRegistrationService().page((UUID)null, Arrays.asList(RegistrationStatus.PREPARATION, RegistrationStatus.PUBLISHED), null, null, null, null, null, null, null, null);
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assertEquals(2l, pager.getCount().longValue());
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// status filter with submitter
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pager = repo.getRegistrationService().page(USER1_UUID, Arrays.asList(RegistrationStatus.PREPARATION, RegistrationStatus.PUBLISHED), null, null, null, null, null, null, null, null);
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assertEquals(2l, pager.getCount().longValue());
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pager = repo.getRegistrationService().page(USER2_UUID, Arrays.asList(RegistrationStatus.PREPARATION, RegistrationStatus.PUBLISHED), null, null, null, null, null, null, null, null);
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assertEquals(0l, pager.getCount().longValue());
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pager = repo.getRegistrationService().page(USER2_UUID, Arrays.asList(RegistrationStatus.CURATION), null, null, null, null, null, null, null, null);
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assertEquals(1l, pager.getCount().longValue());
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// identifier filter
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pager = repo.getRegistrationService().page((UUID)null, null, "100", null, null, null, null, null, null, null);
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assertEquals(4l, pager.getCount().longValue());
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pager = repo.getRegistrationService().page((UUID)null, null, "test/1001", null, null, null, null, null, null, null);
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assertEquals(1l, pager.getCount().longValue());
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// identifier filter with submitter
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pager = repo.getRegistrationService().page(USER1_UUID, null, "100", null, null, null, null, null, null, null);
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assertEquals(2l, pager.getCount().longValue());
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pager = repo.getRegistrationService().page(USER2_UUID, null, "1002", null, null, null, null, null, null, null);
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assertEquals(1l, pager.getCount().longValue());
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// taxon name filter
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pager = repo.getRegistrationService().page((UUID)null, null, null, "Digitalus", null, null, null, null, null, null);
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assertEquals(4l, pager.getCount().longValue());
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pager = repo.getRegistrationService().page((UUID)null, null, null, "Dig*lus", null, null, null, null, null, null);
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assertEquals(4l, pager.getCount().longValue());
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pager = repo.getRegistrationService().page((UUID)null, null, null, "Digitalus prim", null, null, null, null, null, null);
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assertEquals(1l, pager.getCount().longValue());
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pager = repo.getRegistrationService().page((UUID)null, null, null, "Digitalus secundus", null, null, null, null, Arrays.asList(orderBySpecificIdentifier), null);
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assertEquals(2l, pager.getCount().longValue());
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assertEquals("test/1001", pager.getRecords().get(0).getIdentifier());
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assertNotNull("expecting registration test/1001 to be with name", pager.getRecords().get(0).getName());
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assertTrue("expecting registration test/1001 to be witout type designation", pager.getRecords().get(0).getTypeDesignations().isEmpty());
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assertEquals("test/1003", pager.getRecords().get(1).getIdentifier());
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assertNull("Expecting the registration test/1003 to be without name", pager.getRecords().get(1).getName());
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assertEquals(STD2_UUID, pager.getRecords().get(1).getTypeDesignations().iterator().next().getUuid());
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pager = repo.getRegistrationService().page((UUID)null, null, null, "Digita*", null, null, null, null, null, null);
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assertEquals(4l, pager.getCount().longValue());
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pager = repo.getRegistrationService().page((UUID)null, null, null, "*imus", null, null, null, null, null, null);
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assertEquals(1l, pager.getCount().longValue());
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// taxon name filter with user
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pager = repo.getRegistrationService().page(USER2_UUID, null, null, "Digitalus", null, null, null, null, null, null);
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assertEquals(2l, pager.getCount().longValue());
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// taxon name filter with user and status
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pager = repo.getRegistrationService().page(USER1_UUID, Arrays.asList(RegistrationStatus.PREPARATION), null, "Digitalus", null, null, null, null, null, null);
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assertEquals(1l, pager.getCount().longValue());
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pager = repo.getRegistrationService().page(USER1_UUID, Arrays.asList(RegistrationStatus.PREPARATION, RegistrationStatus.PUBLISHED), "1001", "Digitalus", null, null, null, null, null, null);
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assertEquals(1l, pager.getCount().longValue());
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// type designation status
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// assure the terms are loaded
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assertNotNull(SpecimenTypeDesignationStatus.HOLOTYPE());
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assertNotNull(NameTypeDesignationStatus.TAUTONYMY());
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pager = repo.getRegistrationService().page((UUID)null, null, null, null, null,
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Arrays.asList(SpecimenTypeDesignationStatus.HOLOTYPE().getUuid()), null, null, null, null);
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assertEquals(1l, pager.getCount().longValue());
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assertEquals(STD1_UUID, pager.getRecords().get(0).getTypeDesignations().iterator().next().getUuid());
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pager = repo.getRegistrationService().page((UUID)null, null, null, null, null,
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Arrays.asList(NameTypeDesignationStatus.TAUTONYMY().getUuid()), null, null, Arrays.asList(orderBySpecificIdentifier), null);
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assertEquals(1l, pager.getCount().longValue());
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assertEquals(NDT1_UUID, pager.getRecords().get(0).getTypeDesignations().iterator().next().getUuid());
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pager = repo.getRegistrationService().page((UUID)null, null, null, null, null,
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Arrays.asList(SpecimenTypeDesignationStatus.HOLOTYPE().getUuid(), NameTypeDesignationStatus.TAUTONYMY().getUuid()), null, null, Arrays.asList(orderBySpecificIdentifier), null);
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assertEquals(2l, pager.getCount().longValue());
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assertEquals("test/1000", pager.getRecords().get(0).getIdentifier());
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assertEquals(STD1_UUID, pager.getRecords().get(0).getTypeDesignations().iterator().next().getUuid());
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assertEquals("test/1002", pager.getRecords().get(1).getIdentifier());
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assertEquals(NDT1_UUID, pager.getRecords().get(1).getTypeDesignations().iterator().next().getUuid());
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// type designation status with user
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pager = repo.getRegistrationService().page(USER2_UUID, null, null, null, null,
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Arrays.asList(SpecimenTypeDesignationStatus.HOLOTYPE().getUuid(), NameTypeDesignationStatus.TAUTONYMY().getUuid()), null, null, null, null);
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assertEquals(1l, pager.getCount().longValue());
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assertEquals(NDT1_UUID, pager.getRecords().get(0).getTypeDesignations().iterator().next().getUuid());
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// type designation status with name
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pager = repo.getRegistrationService().page((UUID)null, null, null, "Digital",
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null,
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Arrays.asList(SpecimenTypeDesignationStatus.HOLOTYPE().getUuid(), NameTypeDesignationStatus.TAUTONYMY().getUuid()), null, null, Arrays.asList(orderBySpecificIdentifier), null);
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assertEquals(2l, pager.getCount().longValue());
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assertEquals(STD1_UUID, pager.getRecords().get(0).getTypeDesignations().iterator().next().getUuid());
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assertEquals(NDT1_UUID, pager.getRecords().get(1).getTypeDesignations().iterator().next().getUuid());
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// reference
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pager = repo.getRegistrationService().page((UUID)null, null, null, null,
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"book1", null, null, null, Arrays.asList(orderBySpecificIdentifier), null);
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assertEquals(2l, pager.getCount().longValue());
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pager = repo.getRegistrationService().page((UUID)null, null, null, null,
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"book*", null, null, null, Arrays.asList(orderBySpecificIdentifier), null);
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assertEquals(4l, pager.getCount().longValue());
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}
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@Test
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@DataSet
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public void testPageByNameUUID(){
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OrderHint orderBySpecificIdentifier = new OrderHint("specificIdentifier", SortOrder.ASCENDING);
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OrderHint orderById = new OrderHint("id", SortOrder.ASCENDING);
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repo.authenticate("user1", "00000");
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Pager<Registration> pager;
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List<UUID> nameUuids = Arrays.asList(NAME2_UUID);
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pager = repo.getRegistrationService().page((UUID)null, null, nameUuids, null, null, Arrays.asList(orderBySpecificIdentifier), null);
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assertEquals(2l, pager.getCount().longValue());
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assertEquals("test/1001", pager.getRecords().get(0).getIdentifier());
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assertEquals("test/1003", pager.getRecords().get(1).getIdentifier());
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}
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@Test
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public void testPageByNameUUID_unautheticated(){
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Collection<UUID> nameUuids = null;
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Pager<Registration> pager = repo.getRegistrationService().page((UUID)null, null, nameUuids , null, null, null, null);
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assertEquals(pager.getRecords().size(), pager.getCount().intValue());
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assertEquals("expecting no Registration, since the user is not authenticated", 0l, pager.getCount().longValue());
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}
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@Test
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public void testPageWithPatternFilters_unautheticated(){
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Pager<Registration> pager = repo.getRegistrationService().page((UUID)null, null, null, null, null, null, null, null, null, null);
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assertEquals(pager.getRecords().size(), pager.getCount().intValue());
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assertEquals("expecting only the PUBLISHED Registration, since the user is not authenticated", 1l, pager.getCount().longValue());
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}
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@Override
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// @Test
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public void createTestDataSet() throws FileNotFoundException {
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User user1 = User.NewInstance("user1", "00000");
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User user2 = User.NewInstance("user2", "00000");
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// granted authorities are irrelevant for the test but are required to allow creating the test data
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user1.getAuthorities().add(Role.ROLE_ADMIN);
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user2.getAuthorities().add(Role.ROLE_ADMIN);
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user1.setUuid(USER1_UUID);
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user2.setUuid(USER2_UUID);
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repo.getUserService().save(user1);
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repo.getUserService().save(user2);
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Reference book1 = ReferenceFactory.newBook();
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book1.setTitle("book1");
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Reference book2 = ReferenceFactory.newBook();
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book2.setTitle("book2");
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repo.getReferenceService().save(book1);
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repo.getReferenceService().save(book2);
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TaxonName species1 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES(), "Digitalus", null, "primus", null, null, book1, "11", null);
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species1.setUuid(NAME1_UUID);
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TaxonName species2 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES(), "Digitalus", null, "secundus", null, null, book2, "22", null);
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species2.setUuid(NAME2_UUID);
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TaxonName genus = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS(), "Digitalus", null, null, null, null, book1, "33", null);
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genus.setUuid(NAME2_UUID);
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repo.getNameService().save(Arrays.asList(species1, species2, genus));
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SpecimenTypeDesignation std1 = SpecimenTypeDesignation.NewInstance();
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std1.setCitation(book1);
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std1.setUuid(STD1_UUID);
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std1.setTypeStatus(SpecimenTypeDesignationStatus.HOLOTYPE());
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SpecimenTypeDesignation std2 = SpecimenTypeDesignation.NewInstance();
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std2.setCitation(book2);
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std2.setUuid(STD2_UUID);
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std2.setTypeStatus(SpecimenTypeDesignationStatus.EPITYPE());
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NameTypeDesignation ntd1 = NameTypeDesignation.NewInstance();
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ntd1.setCitation(book1);
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ntd1.setTypeName(species1);
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ntd1.setUuid(NDT1_UUID);
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290
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ntd1.setTypeStatus(NameTypeDesignationStatus.TAUTONYMY());
|
|
291
|
|
|
292
|
genus.addTypeDesignation(ntd1, false);
|
|
293
|
species1.addTypeDesignation(std1, false);
|
|
294
|
species2.addTypeDesignation(std2, false);
|
|
295
|
|
|
296
|
repo.getNameService().saveOrUpdate(Arrays.asList(species1, species2, genus));
|
|
297
|
|
|
298
|
repo.authenticate("user1", "00000");
|
|
299
|
Registration reg1 = Registration.NewInstance("test/1000", "1000", species1, new HashSet(Arrays.asList(std1))); // --> book1
|
|
300
|
reg1.setStatus(RegistrationStatus.PUBLISHED);
|
|
301
|
// the authenticated user will be set as submitter in new Registrations
|
|
302
|
// see RegistrationServiceImpl.prepareForSave(Registration reg)
|
|
303
|
repo.getRegistrationService().save(reg1);
|
|
304
|
|
|
305
|
// the authenticated user will be set as submitter in new Registrations
|
|
306
|
// see RegistrationServiceImpl.prepareForSave(Registration reg)
|
|
307
|
Registration reg2 = Registration.NewInstance("test/1001", "1001", species2, null); // --> book2
|
|
308
|
reg2.setStatus(RegistrationStatus.PREPARATION);
|
|
309
|
repo.getRegistrationService().save(reg2);
|
|
310
|
|
|
311
|
repo.authenticate("user2", "00000");
|
|
312
|
// the authenticated user will be set as submitter in new Registrations
|
|
313
|
// see RegistrationServiceImpl.prepareForSave(Registration reg)
|
|
314
|
Registration reg3 = Registration.NewInstance("test/1002", "1002", genus, new HashSet(Arrays.asList(ntd1))); // --> book1
|
|
315
|
repo.getRegistrationService().save(reg3);
|
|
316
|
reg3.setStatus(RegistrationStatus.CURATION);
|
|
317
|
|
|
318
|
Registration reg4 = Registration.NewInstance("test/1003", "1003", null, new HashSet(Arrays.asList(std2))); // --> book2
|
|
319
|
repo.getRegistrationService().save(reg4);
|
|
320
|
reg4.setStatus(RegistrationStatus.READY);
|
|
321
|
|
|
322
|
// 2. end the transaction so that all data is actually written to the db
|
|
323
|
setComplete();
|
|
324
|
endTransaction();
|
|
325
|
|
|
326
|
// use the fileNameAppendix if you are creating a data set file which need to be named differently
|
|
327
|
// from the standard name. For example if a single test method needs different data then the other
|
|
328
|
// methods the test class you may want to set the fileNameAppendix when creating the data for this method.
|
|
329
|
String fileNameAppendix = null;
|
|
330
|
|
|
331
|
// 3.
|
|
332
|
writeDbUnitDataSetFile(new String[] {
|
|
333
|
"UserAccount",
|
|
334
|
"REFERENCE",
|
|
335
|
"Registration", "Registration_TypeDesignationBase",
|
|
336
|
"TaxonName", "TaxonName_TypeDesignationBase",
|
|
337
|
"TypeDesignationBase",
|
|
338
|
"AGENTBASE", "HOMOTYPICALGROUP",
|
|
339
|
"OriginalSourceBase",
|
|
340
|
"HIBERNATE_SEQUENCES" // IMPORTANT!!!
|
|
341
|
},
|
|
342
|
fileNameAppendix, true );
|
|
343
|
}
|
|
344
|
}
|