1
|
/**
|
2
|
* Copyright (C) 2007 EDIT
|
3
|
* European Distributed Institute of Taxonomy
|
4
|
* http://www.e-taxonomy.eu
|
5
|
*
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
8
|
*/
|
9
|
|
10
|
package eu.etaxonomy.cdm.remote.controller;
|
11
|
|
12
|
import java.io.IOException;
|
13
|
import java.util.ArrayList;
|
14
|
import java.util.Arrays;
|
15
|
import java.util.HashSet;
|
16
|
import java.util.List;
|
17
|
import java.util.Set;
|
18
|
import java.util.UUID;
|
19
|
|
20
|
import javax.servlet.http.HttpServletRequest;
|
21
|
import javax.servlet.http.HttpServletResponse;
|
22
|
|
23
|
import org.jboss.logging.Logger;
|
24
|
import org.springframework.beans.factory.annotation.Autowired;
|
25
|
import org.springframework.stereotype.Controller;
|
26
|
import org.springframework.web.bind.annotation.PathVariable;
|
27
|
import org.springframework.web.bind.annotation.RequestMapping;
|
28
|
import org.springframework.web.bind.annotation.RequestMethod;
|
29
|
import org.springframework.web.bind.annotation.RequestParam;
|
30
|
|
31
|
import eu.etaxonomy.cdm.api.service.INameService;
|
32
|
import eu.etaxonomy.cdm.api.service.pager.Pager;
|
33
|
import eu.etaxonomy.cdm.model.common.CdmBase;
|
34
|
import eu.etaxonomy.cdm.model.media.ExternalLink;
|
35
|
import eu.etaxonomy.cdm.model.name.NameRelationship;
|
36
|
import eu.etaxonomy.cdm.model.name.Registration;
|
37
|
import eu.etaxonomy.cdm.model.name.RegistrationStatus;
|
38
|
import eu.etaxonomy.cdm.model.name.TaxonName;
|
39
|
import eu.etaxonomy.cdm.model.name.TypeDesignationBase;
|
40
|
import eu.etaxonomy.cdm.persistence.dao.initializer.EntityInitStrategy;
|
41
|
import eu.etaxonomy.cdm.remote.service.RegistrableEntityFilter;
|
42
|
import eu.etaxonomy.cdm.strategy.cache.TaggedText;
|
43
|
import io.swagger.annotations.Api;
|
44
|
|
45
|
/**
|
46
|
* TODO write controller documentation
|
47
|
*
|
48
|
* @author a.kohlbecker
|
49
|
* @since 24.03.2009
|
50
|
*/
|
51
|
|
52
|
@Controller
|
53
|
@Api("name")
|
54
|
@RequestMapping(value = {"/name/{uuid}"})
|
55
|
public class NameController extends AbstractIdentifiableController<TaxonName, INameService>{
|
56
|
|
57
|
private static Logger logger = Logger.getLogger(NameController.class);
|
58
|
|
59
|
public static final EntityInitStrategy TYPEDESIGNATION_INIT_STRATEGY = new EntityInitStrategy(Arrays.asList(new String []{
|
60
|
"typeStatus.representations",
|
61
|
"typifiedNames",
|
62
|
"typeSpecimen",
|
63
|
"typeName",
|
64
|
"designationSource.citation",
|
65
|
"designationSource.citation.authorship.$",
|
66
|
"registrations", // needed for access control
|
67
|
"text"
|
68
|
}));
|
69
|
|
70
|
public static final EntityInitStrategy FULL_TITLE_CACHE_INIT_STRATEGY = new EntityInitStrategy(Arrays.asList(new String []{
|
71
|
"$",
|
72
|
"relationsFromThisName.$",
|
73
|
"relationsToThisName.$",
|
74
|
"status.$",
|
75
|
"nomenclaturalSource.citation.authorship.$",
|
76
|
"nomenclaturalSource.citation.inReference.authorship.$",
|
77
|
"nomenclaturalSource.citation.inReference.inReference.authorship.$",
|
78
|
"nomenclaturalSource.citation.inReference.inReference.inReference.authorship.$"
|
79
|
}));
|
80
|
|
81
|
public static final EntityInitStrategy NAME_RELATIONS_INIT_STRATEGY = new EntityInitStrategy(Arrays.asList(new String []{
|
82
|
"$",
|
83
|
"source.citation",
|
84
|
"relationsFromThisName.$",
|
85
|
"relationsFromThisName.toName.registrations",
|
86
|
"relationsToThisName.$",
|
87
|
"relationsToThisName.fromName.registrations"
|
88
|
}));
|
89
|
|
90
|
public static final EntityInitStrategy NAME_CACHE_INIT_STRATEGY = new EntityInitStrategy(Arrays.asList(new String []{
|
91
|
|
92
|
}));
|
93
|
|
94
|
public static final EntityInitStrategy NAME_REGISTRATIONS_INIT_STRATEGY = new EntityInitStrategy(Arrays.asList(new String []{
|
95
|
"registrations.typeDesignations.$",
|
96
|
"registrations.institution"
|
97
|
}));
|
98
|
|
99
|
public NameController(){
|
100
|
super();
|
101
|
setInitializationStrategy(Arrays.asList(new String[]{"$"})); //TODO still needed????
|
102
|
}
|
103
|
|
104
|
@Autowired
|
105
|
@Override
|
106
|
public void setService(INameService service) {
|
107
|
this.service = service;
|
108
|
}
|
109
|
|
110
|
|
111
|
@Override
|
112
|
protected <CDM_BASE extends CdmBase> List<String> complementInitStrategy(Class<CDM_BASE> clazz,
|
113
|
List<String> pathProperties) {
|
114
|
|
115
|
if(pathProperties == null){
|
116
|
return pathProperties;
|
117
|
}
|
118
|
|
119
|
EntityInitStrategy initStrategy = new EntityInitStrategy(pathProperties);
|
120
|
|
121
|
if(pathProperties.contains("nameRelations")){
|
122
|
// nameRelations is a transient property!
|
123
|
initStrategy.getPropertyPaths().remove("nameRelations");
|
124
|
initStrategy.extend("relationsFromThisName", TaxonPortalController.NAMERELATIONSHIP_INIT_STRATEGY.getPropertyPaths(), true);
|
125
|
initStrategy.extend("relationsToThisName", TaxonPortalController.NAMERELATIONSHIP_INIT_STRATEGY.getPropertyPaths(), true);
|
126
|
} else {
|
127
|
if(pathProperties.contains("relationsFromThisName")){
|
128
|
initStrategy.getPropertyPaths().remove("relationsFromThisName");
|
129
|
initStrategy.extend("relationsFromThisName", TaxonPortalController.NAMERELATIONSHIP_INIT_STRATEGY.getPropertyPaths(), true);
|
130
|
}
|
131
|
if(pathProperties.contains("relationsToThisName")){
|
132
|
initStrategy.getPropertyPaths().remove("relationsToThisName");
|
133
|
initStrategy.extend("relationsToThisName", TaxonPortalController.NAMERELATIONSHIP_INIT_STRATEGY.getPropertyPaths(), true);
|
134
|
}
|
135
|
}
|
136
|
|
137
|
return initStrategy.getPropertyPaths();
|
138
|
}
|
139
|
|
140
|
|
141
|
/**
|
142
|
* Get the list of {@link TypeDesignationBase}s of the
|
143
|
* {@link TaxonName} instance identified by the <code>{name-uuid}</code>.
|
144
|
* <p>
|
145
|
* URI: <b>/{datasource-name}/name/{name-uuid}/typeDesignations</b>
|
146
|
*
|
147
|
* @param request
|
148
|
* @param response
|
149
|
* @return a List of {@link TypeDesignationBase} entities which are initialized
|
150
|
* using the {@link #TYPEDESIGNATION_INIT_STRATEGY}
|
151
|
* @throws IOException
|
152
|
*/
|
153
|
@RequestMapping(value = { "typeDesignations" }, method = RequestMethod.GET)
|
154
|
public List<TypeDesignationBase> doGetTypeDesignations(
|
155
|
@PathVariable("uuid") UUID uuid, HttpServletRequest request,
|
156
|
HttpServletResponse response) throws IOException {
|
157
|
|
158
|
if (request != null) {
|
159
|
logger.info("doGetTypeDesignations()" + requestPathAndQuery(request));
|
160
|
}
|
161
|
TaxonName tnb = getCdmBaseInstance(uuid, response, (List<String>)null);
|
162
|
if(tnb == null){
|
163
|
return null;
|
164
|
}
|
165
|
Pager<TypeDesignationBase> pager = service.getTypeDesignations(tnb, null,
|
166
|
null, null, TYPEDESIGNATION_INIT_STRATEGY.getPropertyPaths());
|
167
|
return new ArrayList(RegistrableEntityFilter.newInstance(userHelper).filterPublishedOnly(pager.getRecords()));
|
168
|
}
|
169
|
|
170
|
/**
|
171
|
* Get the list of {@link TypeDesignationBase}s associated to any name in the same homotypical group to which
|
172
|
* the {@link TaxonName} identified by the <code>{name-uuid}</code> belongs.
|
173
|
* <p>
|
174
|
* URI: <b>/{datasource-name}/name/{name-uuid}/typeDesignations</b>
|
175
|
*
|
176
|
* @param request
|
177
|
* @param response
|
178
|
* @return a List of {@link TypeDesignationBase} entities which are initialized
|
179
|
* using the {@link #TYPEDESIGNATION_INIT_STRATEGY}
|
180
|
* @throws IOException
|
181
|
*/
|
182
|
@RequestMapping(value = { "typeDesignationsInHomotypicalGroup" }, method = RequestMethod.GET)
|
183
|
public List<TypeDesignationBase> doGetTypeDesignationsInHomotypicalGroup(
|
184
|
@PathVariable("uuid") UUID uuid, HttpServletRequest request,
|
185
|
HttpServletResponse response) throws IOException {
|
186
|
|
187
|
if (request != null) {
|
188
|
logger.info("doGetTypeDesignationsInHomotypicalGroup()" + requestPathAndQuery(request));
|
189
|
}
|
190
|
List<TypeDesignationBase> result = service.getTypeDesignationsInHomotypicalGroup(uuid,
|
191
|
null, null, TYPEDESIGNATION_INIT_STRATEGY.getPropertyPaths());
|
192
|
return new ArrayList(RegistrableEntityFilter.newInstance(userHelper).filterPublishedOnly(result));
|
193
|
}
|
194
|
|
195
|
|
196
|
@RequestMapping(
|
197
|
value = {"nameCache"},
|
198
|
method = RequestMethod.GET)
|
199
|
public List<String> doGetNameCache(@PathVariable("uuid") UUID uuid,
|
200
|
HttpServletRequest request, HttpServletResponse response)throws IOException {
|
201
|
|
202
|
logger.info("doGetNameCache()" + requestPathAndQuery(request));
|
203
|
TaxonName tnb = getCdmBaseInstance(uuid, response, NAME_CACHE_INIT_STRATEGY.getPropertyPaths());
|
204
|
if(tnb == null){
|
205
|
return null;
|
206
|
}
|
207
|
String nameCacheString = tnb.getNameCache();
|
208
|
List<String> result = new ArrayList<>();
|
209
|
result.add(nameCacheString);
|
210
|
return result;
|
211
|
|
212
|
}
|
213
|
|
214
|
@RequestMapping(value = "taggedName", method = RequestMethod.GET)
|
215
|
public List<TaggedText> doGetTaggedName(
|
216
|
@PathVariable("uuid") UUID uuid,
|
217
|
HttpServletRequest request,
|
218
|
HttpServletResponse response) throws IOException {
|
219
|
logger.info("doGetDescriptionElementsByType() - " + requestPathAndQuery(request));
|
220
|
return service.getTaggedName(uuid);
|
221
|
}
|
222
|
|
223
|
@RequestMapping(value = "taggedFullTitle", method = RequestMethod.GET)
|
224
|
public List<TaggedText> doGetTaggedFullTitle(
|
225
|
@PathVariable("uuid") UUID uuid,
|
226
|
HttpServletRequest request,
|
227
|
HttpServletResponse response) throws IOException {
|
228
|
logger.info("doGetTaggedFullTitle() - " + requestPathAndQuery(request));
|
229
|
|
230
|
TaxonName name = service.load(uuid, FULL_TITLE_CACHE_INIT_STRATEGY.getPropertyPaths());
|
231
|
return name.getTaggedFullTitle();
|
232
|
}
|
233
|
|
234
|
@RequestMapping(
|
235
|
value = "registrations",
|
236
|
method = RequestMethod.GET)
|
237
|
public Set<Registration> doGetRegistrations(@PathVariable("uuid") UUID uuid,
|
238
|
HttpServletRequest request, HttpServletResponse response)throws IOException {
|
239
|
|
240
|
logger.info("doGetRegistrations" + requestPathAndQuery(request));
|
241
|
TaxonName tnb = getCdmBaseInstance(uuid, response, NAME_REGISTRATIONS_INIT_STRATEGY.getPropertyPaths());
|
242
|
Set<Registration> regs = tnb.getRegistrations();
|
243
|
if(regs != null && regs.size() > 0){
|
244
|
Set<Registration> regsFiltered = new HashSet<>(regs.size());
|
245
|
for(Registration reg : regs){
|
246
|
if(userHelper.userIsAutheticated() && reg.getStatus().equals(RegistrationStatus.PUBLISHED)) {
|
247
|
regsFiltered.add(reg);
|
248
|
} else {
|
249
|
logger.debug("skipping unpublished registration");
|
250
|
}
|
251
|
}
|
252
|
return regsFiltered;
|
253
|
}
|
254
|
return null;
|
255
|
}
|
256
|
|
257
|
@RequestMapping(
|
258
|
value = "nameRelations",
|
259
|
method = RequestMethod.GET)
|
260
|
public Object doGetNameRelations(
|
261
|
@PathVariable("uuid") UUID uuid,
|
262
|
// doPage request parameters
|
263
|
@RequestParam(value = "pageIndex", required = false) Integer pageIndex,
|
264
|
@RequestParam(value = "pageSize", required = false) Integer pageSize,
|
265
|
// doList request parameters
|
266
|
@RequestParam(value = "start", required = false) Integer start,
|
267
|
@RequestParam(value = "limit", required = false) Integer limit,
|
268
|
HttpServletRequest request,
|
269
|
HttpServletResponse response) throws IOException {
|
270
|
|
271
|
logger.info("doGetNameRelations" + requestPathAndQuery(request));
|
272
|
TaxonName tnb = getCdmBaseInstance(uuid, response, NAME_RELATIONS_INIT_STRATEGY.getPropertyPaths());
|
273
|
|
274
|
Set<NameRelationship> nameRelations = tnb.getNameRelations();
|
275
|
|
276
|
if(nameRelations != null && nameRelations.size() > 0){
|
277
|
Set<NameRelationship> nameRelationsFiltered = RegistrableEntityFilter.
|
278
|
newInstance(userHelper).filterPublishedOnly(tnb, nameRelations);
|
279
|
return pageFromCollection(nameRelationsFiltered, pageIndex, pageSize, start, limit, response);
|
280
|
}
|
281
|
return null;
|
282
|
}
|
283
|
|
284
|
/**
|
285
|
* Provides the „Protologue / original publication“ of the names nomenclatural reference.
|
286
|
*
|
287
|
*/
|
288
|
@RequestMapping(value = "protologueLinks", method = RequestMethod.GET)
|
289
|
public Set<ExternalLink> doGetProtologueLinks(
|
290
|
@PathVariable("uuid") UUID uuid,
|
291
|
HttpServletRequest request,
|
292
|
HttpServletResponse response) throws IOException {
|
293
|
logger.info("doGetProtologueLinks() - " + requestPathAndQuery(request));
|
294
|
TaxonName name = service.load(uuid, Arrays.asList("nomenclaturalSource.links"));
|
295
|
if(name.getNomenclaturalSource() != null) {
|
296
|
return name.getNomenclaturalSource().getLinks();
|
297
|
}
|
298
|
return null;
|
299
|
}
|
300
|
|
301
|
}
|