Revision 379eb203
Added by Andreas Müller over 3 years ago
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/excel/in/SpecimenSythesysExcelImport.java | ||
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* The contents of this file are subject to the Mozilla Public License Version 1.1 |
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* See LICENSE.TXT at the top of this package for the full license terms. |
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*/ |
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package eu.etaxonomy.cdm.io.specimen.excel.in; |
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import java.io.FileNotFoundException; |
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* @author p.kelbert |
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* @since 29.10.2008 |
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* @since 13 mars 2013 |
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* |
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*/ |
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@Component |
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public class SpecimenSythesysExcelImport extends CdmImportBase<SpecimenSynthesysExcelImportConfigurator, SpecimenSynthesysExcelImportState> |
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implements ICdmIO<SpecimenSynthesysExcelImportState> {
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private static final long serialVersionUID = -1145031415387024364L; |
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private static final Logger logger = Logger.getLogger(SpecimenSythesysExcelImport.class); |
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protected String fullScientificNameString; |
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* return empty string instead of null |
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* */ |
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public class MyHashMap<K,V> extends HashMap<K,V> {
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/** |
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* |
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*/ |
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private static final long serialVersionUID = -6230407405666753405L; |
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@SuppressWarnings("unchecked")
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} |
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getClassificationService().saveOrUpdate(classification); |
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} |
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} |
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} |
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|
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identifier = unit.get("identifier");
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} |
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private Institution getInstitution(SpecimenSynthesysExcelImportConfigurator config){
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Institution institution; |
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List<Institution> institutions; |
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return collection; |
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} |
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/* |
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* |
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* @param app |
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* @param derivedThing |
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* @param sec |
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*/ |
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private void setTaxonName(SpecimenSynthesysExcelImportConfigurator config){
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TaxonName taxonName = null; |
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Taxon taxon = null; |
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taxon = addTaxonNode(taxon, config); |
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} |
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DeterminationEvent determinationEvent = DeterminationEvent.NewInstance(); |
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determinationEvent.setTaxon(getTaxonService().find(taxon.getUuid())); |
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determinationEvent.setPreferredFlag(preferredFlag); |
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getOccurrenceService().saveOrUpdate(derivedUnitBase); |
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} |
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} |
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/** |
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* @param taxon |
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* @param taxonName |
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* @param config |
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* @return |
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*/ |
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private Taxon addTaxonNode(Taxon taxon, SpecimenSynthesysExcelImportConfigurator config) {
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if (DEBUG) {
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logger.info("link taxon to a taxonNode");
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} |
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} |
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if (collteam.size()>0) {
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collectorinteams.add(new ArrayList<String>(new HashSet<String>(collteam)));
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collectorinteams.add(new ArrayList<String>(new HashSet<>(collteam))); |
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} |
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} |
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else |
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} |
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} |
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List<String> collectorsU = new ArrayList<String>(new HashSet<String>(collectors));
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List<String> teamsU = new ArrayList<String>(new HashSet<String>(teams));
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List<String> collectorsU = new ArrayList<String>(new HashSet<>(collectors)); |
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List<String> teamsU = new ArrayList<String>(new HashSet<>(teams)); |
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//existing teams in DB |
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Map<String,Team> titleCacheTeam = new HashMap<String, Team>(); |
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List<UuidAndTitleCache<Team>> hiberTeam = getAgentService().getTeamUuidAndTitleCache(); |
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Set<UUID> uuids = new HashSet<UUID>();
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Set<UUID> uuids = new HashSet<>(); |
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for (UuidAndTitleCache<Team> hibernateT:hiberTeam){
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uuids.add(hibernateT.getUuid()); |
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} |
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} |
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Map<String,UUID> teamMap = new HashMap<String, UUID>();
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Map<String,UUID> teamMap = new HashMap<>(); |
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for (UuidAndTitleCache<Team> uuidt:hiberTeam){
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teamMap.put(uuidt.getTitleCache(), uuidt.getUuid()); |
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} |
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//existing persons in DB |
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List<UuidAndTitleCache<Person>> hiberPersons = getAgentService().getPersonUuidAndTitleCache(); |
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Map<String,Person> titleCachePerson = new HashMap<String, Person>();
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Map<String,Person> titleCachePerson = new HashMap<>(); |
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uuids = new HashSet<UUID>(); |
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for (UuidAndTitleCache<Person> hibernateP:hiberPersons){
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uuids.add(hibernateP.getUuid()); |
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personMap.put(person.getTitleCache(), person.getUuid()); |
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} |
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java.util.Collection<AgentBase> personsToAdd = new ArrayList<AgentBase>();
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java.util.Collection<AgentBase> teamsToAdd = new ArrayList<AgentBase>();
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java.util.Collection<AgentBase> personsToAdd = new ArrayList<>(); |
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java.util.Collection<AgentBase> teamsToAdd = new ArrayList<>(); |
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for (String collector:collectorsU){
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Person p = Person.NewInstance(); |
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titleCachePerson.put(uuuidPerson.get(u).getTitleCache(),CdmBase.deproxy(uuuidPerson.get(u), Person.class) ); |
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} |
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Person ptmp ; |
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Map <String,Integer>teamdone = new HashMap<String, Integer>(); |
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for (List<String> collteam: collectorinteams){
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