EDIT

/**

* Copyright (C) 2017 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.api.service;

import java.io.IOException;

import java.util.ArrayList;

import java.util.Arrays;

import java.util.Collection;

import java.util.HashMap;

import java.util.List;

import java.util.Map;

import java.util.Optional;

import java.util.Set;

import java.util.UUID;

import java.util.stream.Collectors;

import org.springframework.beans.factory.annotation.Autowired;

import org.springframework.security.core.Authentication;

import org.springframework.stereotype.Service;

import org.springframework.transaction.annotation.Transactional;

import eu.etaxonomy.cdm.api.service.idminter.IdentifierMinter.Identifier;

import eu.etaxonomy.cdm.api.service.idminter.RegistrationIdentifierMinter;

import eu.etaxonomy.cdm.api.service.pager.Pager;

import eu.etaxonomy.cdm.api.service.pager.impl.AbstractPagerImpl;

import eu.etaxonomy.cdm.api.service.pager.impl.DefaultPagerImpl;

import eu.etaxonomy.cdm.api.service.taxonGraph.ITaxonGraphService;

import eu.etaxonomy.cdm.api.utility.UserHelper;

import eu.etaxonomy.cdm.model.name.Registration;

import eu.etaxonomy.cdm.model.name.RegistrationStatus;

import eu.etaxonomy.cdm.model.name.TaxonName;

import eu.etaxonomy.cdm.model.name.TypeDesignationBase;

import eu.etaxonomy.cdm.model.permission.Operation;

import eu.etaxonomy.cdm.model.permission.User;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.persistence.dao.common.Restriction;

import eu.etaxonomy.cdm.persistence.dao.name.IRegistrationDao;

import eu.etaxonomy.cdm.persistence.query.MatchMode;

import eu.etaxonomy.cdm.persistence.query.OrderHint;

/**

 * @author a.kohlbecker

 * @since May 2, 2017

 *

 */

@Service

@Transactional(readOnly = true)

public class RegistrationServiceImpl extends AnnotatableServiceBase<Registration, IRegistrationDao>

    implements IRegistrationService {

    /**

     * {@inheritDoc}

     */

    @Autowired

    @Override

    protected void setDao(IRegistrationDao dao) {

        this.dao = dao;

    }

    @Autowired(required=false)

    private RegistrationIdentifierMinter minter;

    @Autowired

    private UserHelper userHelper;

    @Autowired

    private INameService nameService;

    @Autowired

    private ITaxonGraphService taxonGraphService;

    /**

     * {@inheritDoc}

     */

    @Override

    @Transactional(readOnly = true)

    public Pager<Registration> page(Optional<Reference> reference, Collection<RegistrationStatus> includedStatus,

            Integer pageSize, Integer pageIndex, List<String> propertyPaths) {

        if( !userHelper.userIsAutheticated() || userHelper.userIsAnnonymous() ) {

            includedStatus = Arrays.asList(RegistrationStatus.PUBLISHED);

        }

        long numberOfResults = dao.count(reference, includedStatus);

        List<Registration> results = new ArrayList<>();

        Integer [] limitStart = AbstractPagerImpl.limitStartforRange(numberOfResults, pageIndex, pageSize);

        if(limitStart != null) {

            results = dao.list(reference, includedStatus, limitStart[0], limitStart[1], propertyPaths);

        }

        return new DefaultPagerImpl<>(pageIndex, numberOfResults, pageSize, results);

    }

    @Override

    @Transactional(readOnly = true)

    public Pager<Registration> page(UUID submitterUuid, Collection<RegistrationStatus> includedStatus,

            String identifierFilterPattern, String taxonNameFilterPattern, String referenceFilterPattern,

            Collection<UUID> typeDesignationStatusUuids, Integer pageSize, Integer pageIndex, List<OrderHint> orderHints, List<String> propertyPaths) {

        if( !userHelper.userIsAutheticated() || userHelper.userIsAnnonymous() ) {

            includedStatus = Arrays.asList(RegistrationStatus.PUBLISHED);

        }

        //Logger.getLogger("org.hibernate.SQL").setLevel(Level.DEBUG);

        long numberOfResults = dao.count(submitterUuid, includedStatus, identifierFilterPattern, taxonNameFilterPattern, referenceFilterPattern, typeDesignationStatusUuids);

        //Logger.getLogger("org.hibernate.SQL").setLevel(Level.WARN);

        List<Registration> results = new ArrayList<>();

        if(pageIndex == null){

            pageIndex = 0;

        }

        Integer [] limitStart = AbstractPagerImpl.limitStartforRange(numberOfResults, pageIndex, pageSize);

        if(limitStart != null) {

            results = dao.list(submitterUuid, includedStatus, identifierFilterPattern, taxonNameFilterPattern, referenceFilterPattern, typeDesignationStatusUuids,

                    limitStart[0], limitStart[1], orderHints, propertyPaths);

        }

        return new DefaultPagerImpl<>(pageIndex, numberOfResults, pageSize, results);

    }

    @Override

    @Transactional(readOnly = true)

    public Pager<Registration> pageTaxomicInclusion(UUID submitterUuid, Collection<RegistrationStatus> includedStatus,

            String taxonNameFilterPattern, MatchMode matchMode,

            Integer pageSize, Integer pageIndex, List<OrderHint> orderHints, List<String> propertyPaths) {

        List<TaxonName> includedNames = taxonGraphService.listIncludedNames(taxonNameFilterPattern, matchMode);

        Set<UUID> includedNamesUuids = includedNames.stream().map(TaxonName::getUuid).collect(Collectors.toSet());

        if(includedNames.size() > 0){

            return page(submitterUuid, includedStatus, includedNamesUuids, pageSize, pageIndex, orderHints, propertyPaths);

        } else {

            return new DefaultPagerImpl<>(pageIndex, 0l, pageSize, new ArrayList<Registration>());

        }

    }

    @Override

    @Transactional(readOnly = true)

    public Pager<Registration> page(UUID submitterUuid, Collection<RegistrationStatus> includedStatus,

            Collection<UUID> taxonNameUUIDs,

            Integer pageSize, Integer pageIndex, List<OrderHint> orderHints, List<String> propertyPaths) {

        if( !userHelper.userIsAutheticated() || userHelper.userIsAnnonymous() ) {

            includedStatus = Arrays.asList(RegistrationStatus.PUBLISHED);

        }

        long numberOfResults = dao.count(submitterUuid, includedStatus, taxonNameUUIDs);

        List<Registration> results = new ArrayList<>();

        if(pageIndex == null){

            pageIndex = 0;

        }

        Integer [] limitStart = AbstractPagerImpl.limitStartforRange(numberOfResults, pageIndex, pageSize);

        if(limitStart != null) {

            results = dao.list(submitterUuid, includedStatus, taxonNameUUIDs, limitStart[0], limitStart[1], orderHints, propertyPaths);

        }

        return new DefaultPagerImpl<>(pageIndex, numberOfResults, pageSize, results);

    }

    /**

     * @param identifier

     * @param validateUniqueness

     * @param response

     * @return

     * @throws IOException

     */

    @Override

    @Transactional(readOnly = true)

    public Pager<Registration> pageByIdentifier(String identifier, Integer pageIndex,  Integer pageSize, List<String> propertyPaths) throws IOException {

        List<Restriction<?>> restrictions = new ArrayList<>();

        if( !userHelper.userIsAutheticated() || userHelper.userIsAnnonymous() ) {

            restrictions.add(new Restriction<>("status", null, RegistrationStatus.PUBLISHED));

        }

        Pager<Registration> regPager = pageByParamWithRestrictions(Registration.class, "identifier", identifier, MatchMode.EXACT,

                restrictions, pageSize, pageIndex, null, propertyPaths);

        return regPager;

    }

    @Override

    @Transactional(readOnly = true)

    public Map<UUID, RegistrationStatus> statusByIdentifier(String identifier) throws IOException {

        Pager<Registration> regPager = pageByParamWithRestrictions(Registration.class, "identifier", identifier, MatchMode.EXACT,

                null, null, null, null, Arrays.asList("status"));

        Map<UUID, RegistrationStatus> map = new HashMap<>();

        for(Registration reg : regPager.getRecords()){

            map.put(reg.getUuid(), reg.getStatus());

        }

        return map;

    }

    /**

     * {@inheritDoc}

     */

    @Override

    public Registration save(Registration newInstance) {

        return assureIsPersisted(newInstance);

    }

    /**

     * {@inheritDoc}

     */

    @Override

    public UUID saveOrUpdate(Registration transientObject) {

        transientObject = assureIsPersisted(transientObject);

        return super.saveOrUpdate(transientObject);

    }

    /**

     * {@inheritDoc}

     */

    @Override

    public Map<UUID, Registration> save(Collection<Registration> newInstances) {

        Map<UUID, Registration> regs = new HashMap<>();

        for(Registration newInstance : newInstances) {

            Registration reg = save(newInstance);

            regs.put(reg.getUuid(), reg);

        }

        return regs;

    }

    /**

     * {@inheritDoc}

     */

    @Override

    public Map<UUID, Registration> saveOrUpdate(Collection<Registration> transientInstances) {

        Map<UUID, Registration> regs = new HashMap<>();

        for(Registration transientInstance : transientInstances) {

            UUID uuid = saveOrUpdate(transientInstance);

            regs.put(uuid, transientInstance);

        }

        return regs;

    }

    // ============= functionality to be moved into a "RegistrationManagerBean" => RegistrationServiceImpl ? ==================

    /**

     * Factory Method

     * TODO move into RegistrationFactory

     *

     * @return a new Registration instance with submitter set to the current authentications principal

     */

    @Override

    public Registration newRegistration() {

        Registration reg = Registration.NewInstance(

                null,

                null,

                null,

                null);

        Authentication authentication = userHelper.getAuthentication();

        reg.setSubmitter((User)authentication.getPrincipal());

        return reg;

    }

    @Override

    @Transactional(readOnly=false)

    public Registration createRegistrationForName(UUID taxonNameUuid) {

        Registration reg = Registration.NewInstance(

                null,

                null,

                taxonNameUuid != null ? nameService.load(taxonNameUuid, Arrays.asList("nomenclaturalSource.citation.inReference")) : null,

                        null);

        reg = assureIsPersisted(reg);

        return load(reg.getUuid(), Arrays.asList(new String []{"blockedBy"}));

    }

    @Override

    @Transactional(readOnly=false)

    public Registration assureIsPersisted(Registration reg) {

        if(reg.isPersited()){

            return reg;

        }

        prepareForSave(reg);

        reg = super.save(reg);

        userHelper.createAuthorityForCurrentUser(reg, Operation.UPDATE, RegistrationStatus.PREPARATION.name());

        return reg;

    }

    @Override

    @Transactional(readOnly=false)

    public void addTypeDesignation(UUID registrationUUID, UUID typeDesignationUuid){

        // load the typeDesignations with the registration so that typified names can not be twice in detached sessions

        // otherwise multiple representation problems might occur

        Registration registration = load(registrationUUID, Arrays.asList("typeDesignations"));

        if(registration == null){

            registration = newRegistration();

            registration = assureIsPersisted(registration);

        }

        TypeDesignationBase<?> nameTypeDesignation = nameService.loadTypeDesignation(typeDesignationUuid, Arrays.asList(""));

        registration.getTypeDesignations().add(nameTypeDesignation);

    }

    @Override

    @Transactional(readOnly=false)

    public void addTypeDesignation(Registration registration, UUID typeDesignationUuid){

        if(registration == null){

            registration = newRegistration();

            registration = assureIsPersisted(registration);

        } else {

            if(registration.isPersited()){

                // make sure the the typeDesignations are loaded with the registration so that typified names can not be twice in detached sessions

                // otherwise multiple representation problems might occur

                registration.getTypeDesignations();

            }

        }

        TypeDesignationBase<?> nameTypeDesignation = nameService.loadTypeDesignation(typeDesignationUuid, Arrays.asList(""));

        registration.getTypeDesignations().add(nameTypeDesignation);

    }

    /**

     * Sets the registration identifier and submitter in case the registration is not yet persisted.

     *

     * @param reg

     *   The Registration to prepare for saving.

     */

    private void prepareForSave(Registration reg) {

        if(!reg.isPersited()){

            if(minter != null){

                Identifier<String> identifiers = minter.mint();

                if(identifiers.getIdentifier() == null){

                    throw new RuntimeException("RegistrationIdentifierMinter configuration incomplete.");

                }

                reg.setIdentifier(identifiers.getIdentifier());

                reg.setSpecificIdentifier(identifiers.getLocalId());

            }

            Authentication authentication = userHelper.getAuthentication();

            reg.setSubmitter((User)authentication.getPrincipal());

        }

    }

    /**

     * @param name

     */

    @Override

    public boolean checkRegistrationExistsFor(TaxonName name) {

        for(Registration reg : name.getRegistrations()){

            if(minter != null){

                if(minter.isFromOwnRegistration(reg.getIdentifier())){

                    return true;

                }

            } else {

                return true; // first registrations wins as we can't distinguish them without a minter.

            }

        }

        return false;

    }

    // =============================================================================================

}