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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.strategy.match;
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import java.net.URI;
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import org.apache.log4j.Logger;
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import org.joda.time.DateTime;
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import org.junit.Assert;
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import org.junit.Before;
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import org.junit.BeforeClass;
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import org.junit.Test;
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import eu.etaxonomy.cdm.model.agent.Contact;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.common.AnnotatableEntity;
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import eu.etaxonomy.cdm.model.common.Annotation;
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import eu.etaxonomy.cdm.model.common.LSID;
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import eu.etaxonomy.cdm.model.common.VerbatimTimePeriod;
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import eu.etaxonomy.cdm.model.location.Country;
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import eu.etaxonomy.cdm.model.location.Point;
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import eu.etaxonomy.cdm.model.location.ReferenceSystem;
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import eu.etaxonomy.cdm.model.name.IBotanicalName;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.model.name.TaxonNameFactory;
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import eu.etaxonomy.cdm.model.reference.IBook;
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import eu.etaxonomy.cdm.model.reference.IBookSection;
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import eu.etaxonomy.cdm.model.reference.IPrintSeries;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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import eu.etaxonomy.cdm.model.term.DefaultTermInitializer;
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/**
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* @author a.mueller
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* @since 03.08.2009
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*/
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public class DefaultMatchStrategyTest {
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(DefaultMatchStrategyTest.class);
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private DefaultMatchStrategy matchStrategy;
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private IBook book1;
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private String editionString1 ="Ed.1";
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private String volumeString1 ="Vol.1";
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private Team team1;
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private IPrintSeries printSeries1;
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private Annotation annotation1;
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private String title1 = "Title1";
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private VerbatimTimePeriod datePublished1 = VerbatimTimePeriod.NewVerbatimInstance(2000);
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private int hasProblem1 = 1;
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private LSID lsid1;
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private IBook book2;
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private String editionString2 ="Ed.2";
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private String volumeString2 ="Vol.2";
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private Team team2;
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private IPrintSeries printSeries2;
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private Annotation annotation2;
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private String annotationString2;
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private String title2 = "Title2";
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private DateTime created2 = new DateTime(1999, 3, 1, 0, 0, 0, 0);
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private VerbatimTimePeriod datePublished2 = VerbatimTimePeriod.NewVerbatimInstance(2002);
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private int hasProblem2 = 1;
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private LSID lsid2;
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private IBook book3;
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@BeforeClass
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public static void setUpBeforeClass() throws Exception {
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DefaultTermInitializer termInitializer = new DefaultTermInitializer();
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termInitializer.initialize();
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}
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@Before
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public void setUp() throws Exception {
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team1 = Team.NewInstance();
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team1.setTitleCache("Team1",true);
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team2 = Team.NewInstance();
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team2.setTitleCache("Team2",true);
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printSeries1 = ReferenceFactory.newPrintSeries("Series1");
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printSeries1.setTitle("print series");
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printSeries2 = ReferenceFactory.newPrintSeries("Series2");
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annotation1 = Annotation.NewInstance("Annotation1", null);
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annotationString2 = "Annotation2";
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annotation2 = Annotation.NewInstance(annotationString2, null);
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book1 = ReferenceFactory.newBook();
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book1.setAuthorship(team1);
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book1.setTitle(title1);
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book1.setEdition(editionString1);
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book1.setVolume(volumeString1);
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book1.setInSeries(printSeries1);
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((AnnotatableEntity) book1).addAnnotation(annotation1);
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book1.setDatePublished(datePublished1);
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book1.setParsingProblem(hasProblem1);
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lsid1 = new LSID("authority1", "namespace1", "object1", "revision1");
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book1.setLsid(lsid1);
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((Reference) book1).setNomenclaturallyRelevant(false);
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book2 = ReferenceFactory.newBook();
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book2.setAuthorship(team2);
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book2.setTitle(title2);
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book2.setEdition(editionString2);
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book2.setVolume(volumeString2);
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book2.setInSeries(printSeries2);
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( (AnnotatableEntity) book2).addAnnotation(annotation2);
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book2.setCreated(created2);
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book2.setDatePublished(datePublished2);
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book2.setParsingProblem(hasProblem2);
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lsid2 = new LSID("authority2", "namespace2", "object2", "revision2");
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book2.setLsid(lsid2);
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((Reference) book2).setNomenclaturallyRelevant(true);
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}
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//********************* TEST *********************************************/
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.match.DefaultMatchStrategy#NewInstance(java.lang.Class)}.
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*/
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@Test
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public void testNewInstance() {
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matchStrategy = DefaultMatchStrategy.NewInstance(Reference.class);
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Assert.assertNotNull(matchStrategy);
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// Assert.assertEquals(Reference.class, matchStrategy.getMatchClass());
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.match.DefaultMatchStrategy#getMatchMode(java.lang.String)}.
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*/
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@Test
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public void testGetMatchMode() {
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matchStrategy = DefaultMatchStrategy.NewInstance(Reference.class);
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// Assert.assertEquals("Match mode for isbn should be MatchMode.EQUAL_", MatchMode.EQUAL, matchStrategy.getMatchMode("isbn"));
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// Assert.assertEquals("Match mode for title should be MatchMode.EQUAL_REQUIRED", MatchMode.EQUAL_REQUIRED, matchStrategy.getMatchMode("title"));
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.match.DefaultMatchStrategy#getMatchMode(java.lang.String)}.
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*/
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@Test
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public void testGetSetMatchMode() {
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//legal value
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try {
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matchStrategy = DefaultMatchStrategy.NewInstance(Reference.class);
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matchStrategy.setMatchMode("edition", MatchMode.EQUAL_REQUIRED);
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matchStrategy.getMatching().getFieldMatcher("edition");
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// Assert.assertEquals("Match mode for edition should be", MatchMode.EQUAL_REQUIRED, matchStrategy.getMatchMode("edition"));
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} catch (MatchException e1) {
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Assert.fail();
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}
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//illegalValue
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try {
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matchStrategy.setMatchMode("xxx", MatchMode.EQUAL_REQUIRED);
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Assert.fail("A property name must exist, otherwise an exception must be thrown");
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} catch (Exception e) {
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//ok
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}
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//illegalValue
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try {
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matchStrategy.setMatchMode("cacheStrategy", MatchMode.EQUAL_REQUIRED);
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Assert.fail("CacheStrategy is transient and therefore not a legal match parameter");
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} catch (Exception e) {
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//ok
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}
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}
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@Test
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public void testInvokeCache() throws MatchException {
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matchStrategy = DefaultMatchStrategy.NewInstance(Reference.class);
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Assert.assertTrue("Same object should always match", matchStrategy.invoke(book1, book1).isSuccessful());
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IBook bookClone = (IBook) book1.clone();
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Assert.assertTrue("Cloned book should match", matchStrategy.invoke(book1, bookClone).isSuccessful());
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book1.setTitleCache("cache1",true);
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Assert.assertFalse("Cached book should not match", matchStrategy.invoke(book1, bookClone).isSuccessful());
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bookClone.setTitleCache("cache1",true);
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Assert.assertTrue("Cached book with same cache should match", matchStrategy.invoke(book1, bookClone).isSuccessful());
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bookClone.setTitleCache("cache2",true);
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Assert.assertFalse("Cached book with differings caches should not match", matchStrategy.invoke(book1, bookClone).isSuccessful());
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bookClone.setTitleCache("cache1",true); //restore
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bookClone.setEdition(null);
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Assert.assertTrue("Cached book with a defined and a null edition should match", matchStrategy.invoke(book1, bookClone).isSuccessful());
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matchStrategy = DefaultMatchStrategy.NewInstance(TaxonName.class);
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IBotanicalName botName1 = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS());
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IBotanicalName botName2 = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS());
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Assert.assertNotNull("Rank should not be null", botName1.getRank());
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botName1.setGenusOrUninomial("Genus1");
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botName2.setGenusOrUninomial("Genus1");
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Assert.assertTrue("Names with equal genus should match", matchStrategy.invoke(botName1, botName2).isSuccessful());
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botName1.setCombinationAuthorship(team1);
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botName2.setCombinationAuthorship(null);
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Assert.assertFalse("Names one having an author the other one not should not match", matchStrategy.invoke(botName1, botName2).isSuccessful());
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botName1.setAuthorshipCache("authorCache1");
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botName2.setAuthorshipCache("authorCache1");
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Assert.assertTrue("Names with cached authors should match", matchStrategy.invoke(botName1, botName2).isSuccessful());
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}
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@Test
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public void testInvokeReferences() throws MatchException {
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matchStrategy = DefaultMatchStrategy.NewInstance(Reference.class);
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Assert.assertTrue("Same object should always match", matchStrategy.invoke(book1, book1).isSuccessful());
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IBook bookClone = ((Reference) book1).clone();
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Assert.assertTrue("Cloned book should match", matchStrategy.invoke(book1, bookClone).isSuccessful());
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bookClone.setTitle("Any title");
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Assert.assertFalse("Books with differing titles should not match", matchStrategy.invoke(book1, bookClone).isSuccessful());
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String originalTitle = book1.getTitle();
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bookClone.setTitle(originalTitle);
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Assert.assertTrue("Cloned book should match", matchStrategy.invoke(book1, bookClone).isSuccessful());
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book1.setTitle(null);
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bookClone.setTitle(null);
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Assert.assertFalse("Books with no title should not match", matchStrategy.invoke(book1, bookClone).isSuccessful());
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book1.setTitle(originalTitle);
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bookClone.setTitle(originalTitle);
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bookClone.setInSeries(printSeries2);
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Assert.assertFalse("Cloned book with differing print series should not match", matchStrategy.invoke(book1, bookClone).isSuccessful());
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IPrintSeries seriesClone = ((Reference)printSeries1).clone();
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bookClone.setInSeries(seriesClone);
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Assert.assertTrue("Cloned book with cloned bookSeries should match", matchStrategy.invoke(book1, bookClone).isSuccessful());
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seriesClone.setTitle("Another title");
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Assert.assertFalse("Cloned book should not match with differing series title", matchStrategy.invoke(book1, bookClone).isSuccessful());
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bookClone.setInSeries(printSeries1);
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Assert.assertTrue("Original printSeries should match", matchStrategy.invoke(book1, bookClone).isSuccessful());
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IBook bookTitle1 = ReferenceFactory.newBook();
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IBook bookTitle2 = ReferenceFactory.newBook();
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Assert.assertFalse("Books without title should not match", matchStrategy.invoke(bookTitle1, bookTitle2).isSuccessful());
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String title = "Any title";
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bookTitle1.setTitle(title);
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bookTitle2.setTitle(title);
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Assert.assertTrue("Books with same title (not empty) should match", matchStrategy.invoke(bookTitle1, bookTitle2).isSuccessful());
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bookTitle1.setTitle("");
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bookTitle2.setTitle("");
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Assert.assertFalse("Books with empty title should not match", matchStrategy.invoke(bookTitle1, bookTitle2).isSuccessful());
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//Time period
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bookTitle1.setTitle(title);
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bookTitle2.setTitle(title);
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bookTitle1.setDatePublished(VerbatimTimePeriod.NewVerbatimInstance(1999, 2002));
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Assert.assertFalse("Books with differing publication dates should not match", matchStrategy.invoke(bookTitle1, bookTitle2).isSuccessful());
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bookTitle2.setDatePublished(VerbatimTimePeriod.NewVerbatimInstance(1998));
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Assert.assertFalse("Books with differing publication dates should not match", matchStrategy.invoke(bookTitle1, bookTitle2).isSuccessful());
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bookTitle2.setDatePublished(VerbatimTimePeriod.NewVerbatimInstance(1999));
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Assert.assertFalse("Books with differing publication dates should not match", matchStrategy.invoke(bookTitle1, bookTitle2).isSuccessful());
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bookTitle2.setDatePublished(VerbatimTimePeriod.NewVerbatimInstance(1999, 2002));
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Assert.assertTrue("Books with same publication dates should match", matchStrategy.invoke(bookTitle1, bookTitle2).isSuccessful());
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//BookSection
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IBookSection section1 = ReferenceFactory.newBookSection();
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section1.setInBook(bookTitle1);
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section1.setTitle("SecTitle");
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section1.setPages("22-33");
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IBookSection section2 = ReferenceFactory.newBookSection();
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section2.setInBook(bookTitle1);
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section2.setTitle("SecTitle");
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section2.setPages("22-33");
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IMatchStrategyEqual bookSectionMatchStrategy = DefaultMatchStrategy.NewInstance(Reference.class);
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Assert.assertTrue("Equal BookSections should match", bookSectionMatchStrategy.invoke(section1, section2).isSuccessful());
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section2.setInBook(bookTitle2);
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Assert.assertTrue("Matching books should result in matching book sections", bookSectionMatchStrategy.invoke(section1, section2).isSuccessful());
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bookTitle2.setPages("xx");
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Assert.assertFalse("Sections with differing books should not match", bookSectionMatchStrategy.invoke(section1, section2).isSuccessful());
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//restore
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bookTitle2.setPages(null);
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Assert.assertTrue("Matching books should result in matching book sections", bookSectionMatchStrategy.invoke(section1, section2).isSuccessful());
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printSeries2.setTitle("A new series title");
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IMatchStrategyEqual printSeriesMatchStrategy = DefaultMatchStrategy.NewInstance(Reference.class);
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Assert.assertFalse("Print series with differing titles should not match", printSeriesMatchStrategy.invoke(printSeries1, printSeries2).isSuccessful());
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bookTitle1.setInSeries(printSeries1);
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bookTitle2.setInSeries(printSeries2);
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Assert.assertFalse("Books with not matching in series should not match", matchStrategy.invoke(bookTitle1, bookTitle2).isSuccessful());
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Assert.assertFalse("Sections with differing print series should not match", bookSectionMatchStrategy.invoke(section1, section2).isSuccessful());
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//Authorship
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Person person1 = Person.NewTitledInstance("person");
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Person person2 = Person.NewTitledInstance("person");
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person1.setPrefix("pre1");
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person2.setPrefix("pre2");
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book2= ((Reference) book1).clone();
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Assert.assertTrue("Equal books should match", matchStrategy.invoke(book1, book2).isSuccessful());
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book1.setAuthorship(person1);
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book2.setAuthorship(person1);
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Assert.assertTrue("Books with same author should match", matchStrategy.invoke(book1, book2).isSuccessful());
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book2.setAuthorship(person2);
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Assert.assertFalse("Books with different authors should not match", matchStrategy.invoke(book1, book2).isSuccessful());
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person2.setPrefix("pre1");
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Assert.assertTrue("Books with matching authors should not match", matchStrategy.invoke(book1, book2).isSuccessful());
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}
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319
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/**
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320
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* Test method for {@link eu.etaxonomy.cdm.strategy.match.DefaultMatchStrategy#invoke(eu.etaxonomy.cdm.strategy.match.IMergable, eu.etaxonomy.cdm.strategy.match.IMergable)}.
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321
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* @throws MatchException
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322
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*/
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323
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@Test
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324
|
public void testInvokeTaxonNames() throws MatchException {
|
|
325
|
matchStrategy = DefaultMatchStrategy.NewInstance(TaxonName.class);
|
|
326
|
|
|
327
|
TaxonName botName1 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
328
|
TaxonName botName2 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
329
|
IBotanicalName botName3 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
|
330
|
|
|
331
|
Assert.assertFalse("Names without title should not match", matchStrategy.invoke(botName1, botName2).isSuccessful());
|
|
332
|
|
|
333
|
botName1.setGenusOrUninomial("Genus1");
|
|
334
|
botName1.setSpecificEpithet("species1");
|
|
335
|
|
|
336
|
botName2.setGenusOrUninomial("Genus1");
|
|
337
|
botName2.setSpecificEpithet("species1");
|
|
338
|
Assert.assertTrue("Similar names with titles set should match", matchStrategy.invoke(botName1, botName2).isSuccessful());
|
|
339
|
|
|
340
|
|
|
341
|
botName1.setAnamorphic(true);
|
|
342
|
botName2.setAnamorphic(false);
|
|
343
|
Assert.assertFalse("Similar names with differing boolean marker values should not match", matchStrategy.invoke(botName1, botName2).isSuccessful());
|
|
344
|
botName2.setAnamorphic(true);
|
|
345
|
Assert.assertTrue("Similar names with same boolean marker values should match", matchStrategy.invoke(botName1, botName2).isSuccessful());
|
|
346
|
|
|
347
|
|
|
348
|
|
|
349
|
// //name relations
|
|
350
|
// botName2.addBasionym(botName3, book1, "p.22", null);
|
|
351
|
// Specimen specimen1 = Specimen.NewInstance();
|
|
352
|
// botName2.addSpecimenTypeDesignation(specimen1, SpecimenTypeDesignationStatus.HOLOTYPE(), book2, "p.56", "originalNameString", false, true);
|
|
353
|
//
|
|
354
|
// //descriptions
|
|
355
|
// TaxonNameDescription description1 = TaxonNameDescription.NewInstance();
|
|
356
|
// botName1.addDescription(description1);
|
|
357
|
// TaxonNameDescription description2 = TaxonNameDescription.NewInstance();
|
|
358
|
// botName2.addDescription(description2);
|
|
359
|
|
|
360
|
//authors
|
|
361
|
Team team1 = Team.NewInstance();
|
|
362
|
Team team2 = Team.NewInstance();
|
|
363
|
botName1.setCombinationAuthorship(team1);
|
|
364
|
botName2.setCombinationAuthorship(team2);
|
|
365
|
Assert.assertTrue("Similar teams should match", DefaultMatchStrategy.NewInstance(Team.class).invoke(team1, team2).isSuccessful());
|
|
366
|
Assert.assertTrue("Similar names with matching authors should match", matchStrategy.invoke(botName1, botName2).isSuccessful());
|
|
367
|
|
|
368
|
}
|
|
369
|
|
|
370
|
/**
|
|
371
|
* Test method for {@link eu.etaxonomy.cdm.strategy.match.DefaultMatchStrategy#invoke(IMatchable, IMatchable), eu.etaxonomy.cdm.strategy.match.IMatchable)}.
|
|
372
|
* @throws MatchException
|
|
373
|
*/
|
|
374
|
@Test
|
|
375
|
public void testInvokeAgents() throws MatchException {
|
|
376
|
IMatchStrategyEqual matchStrategy = DefaultMatchStrategy.NewInstance(Team.class);
|
|
377
|
|
|
378
|
Team team1 = Team.NewInstance();
|
|
379
|
Team team2 = Team.NewInstance();
|
|
380
|
Team team3 = Team.NewInstance();
|
|
381
|
|
|
382
|
Assert.assertTrue("Teams should match", matchStrategy.invoke(team1, team2).isSuccessful());
|
|
383
|
Assert.assertTrue("Teams should match", matchStrategy.invoke(team1, team3).isSuccessful());
|
|
384
|
|
|
385
|
String street1 = "Strasse1";
|
|
386
|
team1.setContact(Contact.NewInstance(street1, "12345", "Berlin", Country.ARGENTINAARGENTINEREPUBLIC(),"pobox" , "Region", "a@b.de", "f12345", "+49-30-123456", URI.create("www.abc.de"), Point.NewInstance(2.4, 3.2, ReferenceSystem.WGS84(), 3)));
|
|
387
|
team2.setContact(Contact.NewInstance("Street2", null, "London", null, null, null, null, "874599873", null, null, null));
|
|
388
|
Assert.assertTrue("Contacts should be ignoredin default match strategy", matchStrategy.invoke(team1, team2).isSuccessful());
|
|
389
|
|
|
390
|
team1.setNomenclaturalTitle("nomTitle1");
|
|
391
|
team2.setNomenclaturalTitle("nomTitle2");
|
|
392
|
Assert.assertFalse("Agents with differing nomenclatural titles should not match", matchStrategy.invoke(team1, team2).isSuccessful());
|
|
393
|
//restore
|
|
394
|
team2.setNomenclaturalTitle("nomTitle1");
|
|
395
|
Assert.assertTrue("Agents with equal nomenclatural titles should match", matchStrategy.invoke(team1, team2).isSuccessful());
|
|
396
|
|
|
397
|
|
|
398
|
Person person1 = Person.NewTitledInstance("person1");
|
|
399
|
person1.setProtectedTitleCache(true);
|
|
400
|
Person person2 = Person.NewTitledInstance("person2");
|
|
401
|
person2.setProtectedTitleCache(true);
|
|
402
|
Person person3 = Person.NewTitledInstance("person3");
|
|
403
|
person3.setProtectedTitleCache(true);
|
|
404
|
|
|
405
|
team1.addTeamMember(person1);
|
|
406
|
team2.addTeamMember(person1);
|
|
407
|
Assert.assertTrue("Teams with same team members should match", matchStrategy.invoke(team1, team2).isSuccessful());
|
|
408
|
|
|
409
|
team1.addTeamMember(person2);
|
|
410
|
Assert.assertFalse("Teams with differing team members should not match", matchStrategy.invoke(team1, team2).isSuccessful());
|
|
411
|
team2.addTeamMember(person2);
|
|
412
|
Assert.assertTrue("Teams with same team members should match", matchStrategy.invoke(team1, team2).isSuccessful());
|
|
413
|
team2.removeTeamMember(person2);
|
|
414
|
person3.setPrefix("pre3");
|
|
415
|
team2.addTeamMember(person3);
|
|
416
|
Assert.assertFalse("Teams with differing team members should not match", matchStrategy.invoke(team1, team2).isSuccessful());
|
|
417
|
person3.setTitleCache(person2.getTitleCache(),true);
|
|
418
|
person2.setPrefix("pre3");
|
|
419
|
Assert.assertTrue("Teams with matching members in right order should match", matchStrategy.invoke(team1, team2).isSuccessful());
|
|
420
|
team2.removeTeamMember(person1);
|
|
421
|
team2.addTeamMember(person1);
|
|
422
|
Assert.assertFalse("Teams with matching members in wrong order should not match", matchStrategy.invoke(team1, team2).isSuccessful());
|
|
423
|
|
|
424
|
}
|
|
425
|
|
|
426
|
@Test
|
|
427
|
public void testInvokeTeamOrPersonBase(){
|
|
428
|
|
|
429
|
}
|
|
430
|
|
|
431
|
}
|