/cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/csv/redlist/out/CsvRecordBaseRedlist.java - Diff - EDIT - EDIT Project Management

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Revision 2720ea2c

Added by Andreas Müller over 3 years ago

ID 2720ea2c66c7951dcab5bccad915afd3fbc77ced
Parent 5da100f1
Child de8249cf

cleanup

cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/csv/redlist/out/CsvRecordBaseRedlist.java
1	1	/**
2	2	* Copyright (C) 2009 EDIT
3		* European Distributed Institute of Taxonomy
	3	* European Distributed Institute of Taxonomy
4	4	* http://www.e-taxonomy.eu
5		*
	5	*
6	6	* The contents of this file are subject to the Mozilla Public License Version 1.1
7	7	* See LICENSE.TXT at the top of this package for the full license terms.
8	8	*/
...	...
45	45
46	46	/**
47	47	* @author a.mueller
48		* @since 20.04.2011
49		*
50		*/
51		/**
52	48	* @author alex
53		*
	49	* @since 20.04.2011
54	50	*/
55	51	public abstract class CsvRecordBaseRedlist {
	52
56	53	private static final Logger logger = Logger.getLogger(CsvRecordBaseRedlist.class);
57	54
58	55	//TODO Collection_SEPARATOR
...	...
61	58	protected static final boolean IS_FIRST = false;
62	59	protected static final boolean IS_NOT_FIRST = true;
63	60	// protected static final String SEP = ",";
64
	61
65	62	protected Map<String, URI> knownFields = new HashMap<String, URI>();
66	63	protected Set<TermUri> knownTermFields = new HashSet<TermUri>();
67
	64
68	65	public abstract void write(PrintWriter writer);
69	66	protected abstract void registerKnownFields();
70
	67
71	68	protected int count;
72	69	private CsvMetaDataRecordRedlist metaDataRecord;
73	70	protected CsvTaxExportConfiguratorRedlist config;
...	...
75	72	private Integer id;
76	73	private UUID uuid;
77	74
78
79	75	protected CsvRecordBaseRedlist(CsvMetaDataRecordRedlist metaDataRecord, CsvTaxExportConfiguratorRedlist config){
80	76	this.metaDataRecord = metaDataRecord;
81	77	this.count = metaDataRecord.inc();
82	78	this.config = config;
83	79	}
84
85
	80
86	81	public void setId(Integer id) {
87	82	this.id = id;
88	83	}
...	...
107	102	String value = null;
108	103	print(value, writer, addSeparator, fieldKey);
109	104	}
110
	105
111	106	// protected void print(Object object, PrintWriter writer, boolean addSeparator, TermUri fieldKey) {
112	107	// print(object == null ? null : object.toString(), writer, addSeparator, fieldKey);
113	108	// }
...	...
124	119	print(agent == null ? null : getAgent(agent), writer, addSeparator, fieldKey);
125	120	}
126	121
127
128	122	protected void print(Language language, PrintWriter writer, boolean addSeparator, TermUri fieldKey) {
129	123	print(language, writer, addSeparator, fieldKey.getUriString());
130	124	}
...	...
137	131	protected void print(LSID lsid, PrintWriter writer, boolean addSeparator, String fieldKey) {
138	132	print(lsid == null ? null : String.valueOf(lsid.toString()), writer, addSeparator, fieldKey);
139	133	}
140
	134
141	135	protected void print(Set<Rights> rights, PrintWriter writer, boolean addSeparator, TermUri fieldKey) {
142	136	print(rights, writer, addSeparator, fieldKey.getUriString());
143	137	}
...	...
151	145	protected void print(URI uri, PrintWriter writer, boolean addSeparator, String fieldKey) {
152	146	print(uri == null ? null : String.valueOf(uri), writer, addSeparator, fieldKey);
153	147	}
154
	148
155	149	protected void print(Point point, PrintWriter writer, boolean addSeparator, TermUri latitudeKey, TermUri longitudeKey) {
156	150	print(point, writer, addSeparator, latitudeKey.getUriString(), longitudeKey.getUriString());
157	151	}
158
	152
159	153	protected void print(Point point, PrintWriter writer, boolean addSeparator, String latitudeKey, String longitudeKey) {
160	154	if (point == null){
161	155	String toPrint = null;
...	...
170	164	}
171	165	protected void print(Boolean boolValue, PrintWriter writer, boolean addSeparator, TermUri fieldKey) {
172	166	print(boolValue, writer, addSeparator, fieldKey.getUriString());
173		}
	167	}
174	168	protected void print(Boolean boolValue, PrintWriter writer, boolean addSeparator, String fieldKey) {
175	169	print(boolValue == null ? null : String.valueOf(boolValue), writer, addSeparator, fieldKey);
176	170	}
...	...
181	175	protected void print(Integer intValue, PrintWriter writer, boolean addSeparator, String fieldKey) {
182	176	print(intValue == null ? null : String.valueOf(intValue), writer, addSeparator, fieldKey);
183	177	}
184
	178
185	179	protected void printId(Integer intValue, PrintWriter writer, boolean addSeparator, String fieldKey) {
186	180	print(intValue == null ? null : String.valueOf(intValue), writer, addSeparator, fieldKey);
187	181	}
...	...
196	190	protected void print(String value, PrintWriter writer, boolean addSeparator, TermUri fieldKey, String defaultValue) {
197	191	print(value, writer, addSeparator, fieldKey.getUriString(), defaultValue);
198	192	}
199
	193
200	194	protected void print(String value, PrintWriter writer, boolean addSeparator, String fieldKey) {
201	195	print(value, writer, addSeparator, fieldKey, null);
202	196	}
203
	197
204	198	protected void print(String value, PrintWriter writer, boolean addSeparator, String fieldKey, String defaultValue) {
205	199	if (count == 1 && addSeparator == IS_NOT_FIRST){
206	200	registerFieldKey(URI.create(fieldKey), defaultValue);
...	...
210	204	if (StringUtils.isNotBlank(value)){
211	205	//Replace quotes by double quotes
212	206	value = value.replace("\"", "\"\"");
213
	207
214	208	value = value.replace(config.getLinesTerminatedBy(), "\\r");
215
	209
216	210	//replace all line brakes according to best practices: http://code.google.com/p/gbif-ecat/wiki/BestPractices
217	211	value = value.replace("\r\n", "\\r");
218	212	value = value.replace("\r", "\\r");
219	213	value = value.replace("\n", "\\r");
220
	214
221	215	strToPrint += config.getFieldsEnclosedBy() + value + config.getFieldsEnclosedBy();
222	216	}
223	217	writer.print(strToPrint);
224	218	}
225	219	}
226
	220
227	221	/**
228	222	* @param writer
229	223	* @param list
...	...
245	239	* @param list
246	240	* @param termUri
247	241	* @param writer
248		*
	242	*
249	243	* Method for concatenating strings, especially for the red list use case
250	244	*/
251	245	protected void print(ArrayList<String> list, TermUri termUri, PrintWriter writer){
...	...
266	260	print(element, writer, IS_FIRST, termUri);
267	261	writer.write(",");
268	262	logger.info(element);
269
	263
270	264	}
271	265	}
272	266	}
273	267	}
274
275
	268
	269
276	270	private void registerFieldKey(URI key, String defaultValue) {
277	271	this.metaDataRecord.addFieldEntry(key, defaultValue);
278	272	}
279	273
280
	274
281	275	protected String getRights(Rights rights) {
282	276	if (rights == null){
283	277	return "";
...	...
339	333	return result;
340	334	}
341	335	}
342
	336
343	337	protected String getSex(DefinedTerm sex) {
344	338	String result = CsvTaxExportTransformerRedlist.transformToGbifSex(sex);
345	339	if (result == null){
...	...
352	346	return result;
353	347	}
354	348	}
355
	349
356	350	protected String getLifeStage(DefinedTerm stage) {
357	351	String result = CsvTaxExportTransformerRedlist.transformToGbifLifeStage(stage);
358	352	if (result == null){
...	...
378	372	return result;
379	373	}
380	374	}
381
	375
382	376	protected String getEstablishmentMeans(PresenceAbsenceTerm status) {
383	377	String result = CsvTaxExportTransformerRedlist.transformToGbifEstablishmentMeans(status);
384	378	if (result == null){
...	...
392	386	}
393	387	}
394	388
395
396
	389
	390
397	391	protected String getAgent(AgentBase<?> agent) {
398	392	if (agent == null){
399	393	return "";
...	...
402	396	return agent.getTitleCache();
403	397	}
404	398	}
405
	399
406	400
407	401	protected String getFeature(Feature feature) {
408	402	if (feature == null){
...	...
413	407	}
414	408	}
415	409
416
	410
417	411	protected String getTimePeriod(TimePeriod period) {
418	412	if (period == null){
419	413	return "";
...	...
422	416	return period.toString();
423	417	}
424	418	}
425
	419
426	420	protected String getTimePeriodPart(TimePeriod period, boolean useEnd) {
427	421	if (period == null){
428	422	return "";
...	...
451	445	return result;
452	446	}
453	447	}
454
	448
455	449
456	450	protected String getDesignationType(TypeDesignationStatusBase<?> status) {
457	451	if (status == null){
...	...
471	465	return result;
472	466	}
473	467	}
474
475
	468
476	469	protected void addKnownField(String string, String uri) throws URISyntaxException {
477	470	this.knownFields.put(string, new URI(uri));
478	471	}
479
480		protected void addKnownField(TermUri term) throws URISyntaxException {
	472
	473	protected void addKnownField(TermUri term) {
481	474	this.knownTermFields.add(term);
482	475	}
483		}
	476	}

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Revision 2720ea2c

Added by Andreas Müller over 3 years ago