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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.persistence.dao.hibernate.name;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertNotNull;
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import static org.junit.Assert.assertTrue;
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import java.io.FileNotFoundException;
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import java.util.List;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.logging.log4j.LogManager;import org.apache.logging.log4j.Logger;
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import org.junit.Assert;
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import org.junit.Test;
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import org.unitils.dbunit.annotation.DataSet;
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import org.unitils.dbunit.annotation.ExpectedDataSet;
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import org.unitils.spring.annotation.SpringBeanByType;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.name.IBotanicalName;
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import eu.etaxonomy.cdm.model.name.NameTypeDesignation;
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import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation;
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.model.name.TaxonNameFactory;
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import eu.etaxonomy.cdm.model.name.TypeDesignationBase;
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import eu.etaxonomy.cdm.model.name.TypeDesignationStatusBase;
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import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
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import eu.etaxonomy.cdm.persistence.dao.name.ITaxonNameDao;
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import eu.etaxonomy.cdm.persistence.dao.name.ITypeDesignationDao;
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import eu.etaxonomy.cdm.persistence.dao.occurrence.IOccurrenceDao;
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import eu.etaxonomy.cdm.test.integration.CdmTransactionalIntegrationTest;
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/**
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* @author a.babadshanjan
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* @author a.mueller
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* @since 25.05.2009
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*/
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public class TypeDesignationDaoHibernateImplTest extends CdmTransactionalIntegrationTest {
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@SuppressWarnings("unused")
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private static final Logger logger = LogManager.getLogger(TypeDesignationDaoHibernateImplTest.class);
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@SpringBeanByType
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private ITypeDesignationDao typeDesignationDao;
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@SpringBeanByType
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private ITaxonNameDao nameDao;
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@SpringBeanByType
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private IOccurrenceDao occurrenceDao;
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@Test
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public void testInit() {
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assertNotNull("Instance of ITypeDesignationDao expected", typeDesignationDao);
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}
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@Test
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@DataSet
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public void testGetAllTypeDesignations() {
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List<TypeDesignationBase<?>> typeDesignations = typeDesignationDao.getAllTypeDesignations(100, 0);
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assertEquals(2, typeDesignations.size());
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SpecimenTypeDesignation specTypeDesig = null;
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for (TypeDesignationBase<?> typeDesignation : typeDesignations) {
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typeDesignation= CdmBase.deproxy(typeDesignation);
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if (typeDesignation instanceof NameTypeDesignation) {
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NameTypeDesignation ntd = (NameTypeDesignation)typeDesignation;
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NameTypeDesignationStatus status = ntd.getTypeStatus();
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assertTrue(status.isInstanceOf(NameTypeDesignationStatus.class));
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} else if (typeDesignation instanceof SpecimenTypeDesignation) {
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Assert.assertNull("There should be only 1 specimen type designation but this is already the second", specTypeDesig);
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TypeDesignationStatusBase<?> typeDesignationStatus = ((SpecimenTypeDesignation)typeDesignation).getTypeStatus();
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assertTrue(typeDesignationStatus.isInstanceOf(SpecimenTypeDesignationStatus.class));
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specTypeDesig = CdmBase.deproxy(typeDesignation,SpecimenTypeDesignation.class);
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}
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}
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@SuppressWarnings("null")
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Set<TaxonName> names = specTypeDesig.getTypifiedNames();
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Assert.assertEquals("There should be exactly 1 typified name for the the specimen type designation", 1, names.size());
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TaxonName singleName = names.iterator().next();
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Assert.assertEquals("", UUID.fromString("61b1dcae-8aa6-478a-bcd6-080cf0eb6ad7"), singleName.getUuid());
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}
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@Test
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@DataSet
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@ExpectedDataSet //not yet necessary with current test
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public void testSaveTypeDesignations() {
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List<TypeDesignationBase<?>> typeDesignations = typeDesignationDao.getAllTypeDesignations(100, 0);
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assertEquals(typeDesignations.size(), 2);
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SpecimenTypeDesignation specTypeDesig = null;
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for (TypeDesignationBase<?> typeDesignation : typeDesignations) {
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if (typeDesignation.isInstanceOf(SpecimenTypeDesignation.class)) {
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specTypeDesig = CdmBase.deproxy(typeDesignation,SpecimenTypeDesignation.class);
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}
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}
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TaxonName newName = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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newName.setUuid(UUID.fromString("c16c3bc5-d3d0-4676-91a1-848ebf011e7c"));
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newName.setTitleCache("Name used as typified name", true);
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newName.addTypeDesignation(specTypeDesig, false);
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nameDao.saveOrUpdate(newName);
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// typeDesignationDao.saveOrUpdate(specTypeDesig);
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commitAndStartNewTransaction(null);
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specTypeDesig = (SpecimenTypeDesignation)typeDesignationDao.load(specTypeDesig.getUuid());
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Assert.assertNotNull("specimen type designation should exists in db", specTypeDesig);
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specTypeDesig.getTypifiedNames().size();
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Set<TaxonName> typifiedNames = specTypeDesig.getTypifiedNames();
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Assert.assertEquals("There should be 2 typified names for this type designation now", 2, typifiedNames.size());
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// printDataSet(System.out, new String[]{"TaxonName","TaxonName_AUD",
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// "HomotypicalGroup","HomotypicalGroup_AUD",
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// "TypeDesignationBase","TypeDesignationBase_AUD",
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// "TaxonName_TypeDesignationBase", "TaxonName_TypeDesignationBase_AUD"
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// });
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}
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@Test
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@ExpectedDataSet
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public void testSaveTypeDesignationsBidirectionalCascade() {
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SpecimenTypeDesignation desig1 = SpecimenTypeDesignation.NewInstance();
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desig1.setUuid(UUID.fromString("a1b8af89-b724-469b-b0ce-027c2199aadd"));
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TaxonName name = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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name.setUuid(UUID.fromString("503d78dc-5d4c-4eb6-b682-0ab90fdee02c"));
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name.setTitleCache("Name saved via cascade", true);
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name.addTypeDesignation(desig1, false);
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typeDesignationDao.saveOrUpdate(desig1);
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commit();
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}
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@Test
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@ExpectedDataSet
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//Auditing didn't work for SpecimenTypeDesignations. See #2396
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public void testSaveTypeDesignationsWithAuditing() {
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// creating new Typedesignation for a new Name:
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// 1. new TaxonName with UUID 8564287e-9654-4b8b-a38c-0ccdd9e885db
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TaxonName name1 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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name1.setTitleCache("Name1", true);
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name1.setUuid(UUID.fromString("8564287e-9654-4b8b-a38c-0ccdd9e885db"));
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// 2. new TypeDesignation with uuid ceca086e-e8d3-444e-abfb-c47f76835130
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SpecimenTypeDesignation desig1 = SpecimenTypeDesignation.NewInstance();
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desig1.setUuid(UUID.fromString("ceca086e-e8d3-444e-abfb-c47f76835130"));
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// //REMOVE
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// desig1.setOriginalNameString("orig");
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//
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name1.addTypeDesignation(desig1, true);
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nameDao.saveOrUpdate(name1);
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commitAndStartNewTransaction(new String[]{"TypeDesignationBase", "TypeDesignationBase_AUD"});
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// System.out.println(desig1.getId());
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// System.out.println(desig1.getUuid());
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// printDataSet(System.err, new String[]{"TaxonName","TaxonName_AUD",
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// "HomotypicalGroup","HomotypicalGroup_AUD",
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// "TypeDesignationBase","TypeDesignationBase_AUD",
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// "TaxonName_TypeDesignationBase","TaxonName_TypeDesignationBase_AUD"
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// });
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}
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@Test
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@ExpectedDataSet
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public void testSaveTypeDesignationsCascadeToSpecimen() {
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TaxonName name1 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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name1.setTitleCache("Name1", true);
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name1.setUuid(UUID.fromString("eb41f549-4a70-499b-a9a5-f2314880df07"));
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SpecimenTypeDesignation desig1 = SpecimenTypeDesignation.NewInstance();
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desig1.setUuid(UUID.fromString("6df85e4c-49fe-4eb5-acde-cf6c0c9fc3c5"));
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name1.addTypeDesignation(desig1, true);
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DerivedUnit specimen = DerivedUnit.NewPreservedSpecimenInstance();
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specimen.setUuid(UUID.fromString("f1a7c3b9-169c-4845-9b21-e77f863a8bce"));
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specimen.setTitleCache("Specimen to cascade", true);
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desig1.setTypeSpecimen(specimen);
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nameDao.saveOrUpdate(name1);
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this.setComplete();
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this.endTransaction();
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// printDataSet(System.out, new String[]{"TaxonName","TaxonName_AUD","TypeDesignationBase","TypeDesignationBase_AUD",
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// "TaxonName_TypeDesignationBase","TaxonName_TypeDesignationBase_AUD",
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// "TaxonName_TypeDesignationBase","SpecimenOrObservationBase","SpecimenOrObservationBase_AUD",
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// "HomotypicalGroup","HomotypicalGroup_AUD"});
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}
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@Test
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@ExpectedDataSet
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//test save from specimen to name via type designation
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public void testSaveTypeDesignationsCascadeFromSpecimen() {
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IBotanicalName name1 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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name1.setTitleCache("Name1", true);
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name1.setUuid(UUID.fromString("7ce3a355-8f7c-4417-a0b3-41869de4f60b"));
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SpecimenTypeDesignation desig1 = SpecimenTypeDesignation.NewInstance();
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desig1.setUuid(UUID.fromString("c0e03472-b9f9-4886-b3bd-c1c70dd21a5f"));
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name1.addTypeDesignation(desig1, true);
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DerivedUnit specimen = DerivedUnit.NewPreservedSpecimenInstance();
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specimen.setUuid(UUID.fromString("4c3231a9-336e-4b21-acf2-129683627de4"));
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specimen.setTitleCache("Specimen to cascade", true);
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desig1.setTypeSpecimen(specimen);
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occurrenceDao.saveOrUpdate(specimen);
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commit();
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}
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@Test
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@DataSet
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public void testGetTypeDesignationStatusInUse() {
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List<TypeDesignationStatusBase> statusTerms = typeDesignationDao.getTypeDesignationStatusInUse();
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assertEquals(2, statusTerms.size());
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}
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@Test
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// @ExpectedDataSet
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public void testRemoveTypeDesignationsFromName() {
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IBotanicalName name1 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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name1.setTitleCache("Name1", true);
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name1.setUuid(UUID.fromString("2cfc05fc-138e-452d-b4ea-8798134c7410"));
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IBotanicalName name2 = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
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name2.setTitleCache("Name2", true);
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name2.setUuid(UUID.fromString("7a12057d-2e99-471e-ac7e-633f1d0b5686"));
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SpecimenTypeDesignation desig1 = SpecimenTypeDesignation.NewInstance();
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desig1.setUuid(UUID.fromString("fe9f7711-de4a-4789-8045-86b2cb5c4358"));
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name1.addTypeDesignation(desig1, true);
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name2.addTypeDesignation(desig1, true);
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SpecimenTypeDesignation desig2 = SpecimenTypeDesignation.NewInstance();
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desig2.setUuid(UUID.fromString("bf357711-e752-44e9-bd3d-aef0a0bb5b91"));
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name1.addTypeDesignation(desig2, true);
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typeDesignationDao.saveOrUpdate(desig1);
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typeDesignationDao.saveOrUpdate(desig2);
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this.setComplete();
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this.endTransaction();
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this.startNewTransaction();
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name1 = nameDao.load(name1.getUuid());
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Assert.assertNotNull(name1);
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Assert.assertEquals("Name1 should have 2 type designations", 2, name1.getTypeDesignations().size());
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desig1 = (SpecimenTypeDesignation)typeDesignationDao.load(desig1.getUuid());
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name1.removeTypeDesignation(desig1);
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typeDesignationDao.saveOrUpdate(desig1);
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this.setComplete();
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this.endTransaction();
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this.startNewTransaction();
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name1 = nameDao.load(name1.getUuid());
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Assert.assertNotNull(name1);
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Assert.assertEquals("Name1 should have 1 type designation", 1, name1.getTypeDesignations().size());
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desig2 = (SpecimenTypeDesignation)typeDesignationDao.load(desig2.getUuid());
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Assert.assertNotNull(desig2);
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name1.removeTypeDesignation(desig2);
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typeDesignationDao.saveOrUpdate(desig2);
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this.setComplete();
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this.endTransaction();
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this.startNewTransaction();
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name1 = nameDao.load(name1.getUuid());
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Assert.assertNotNull(name1);
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Assert.assertEquals("Name1 should have no type designations", 0, name1.getTypeDesignations().size());
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name2 = nameDao.load(name2.getUuid());
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Assert.assertNotNull(name1);
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Assert.assertEquals("Name2 should have 1 type designation", 1, name2.getTypeDesignations().size());
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SpecimenTypeDesignation desig1New = (SpecimenTypeDesignation)name2.getTypeDesignations().iterator().next();
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desig1 = (SpecimenTypeDesignation)typeDesignationDao.load(desig1.getUuid());
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Assert.assertSame("Desig1New should be same as desig1", desig1, desig1New);
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try{
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typeDesignationDao.delete(desig1);
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this.setComplete();
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this.endTransaction();
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Assert.fail("desig1 should not be deletable as it is still connected to name2");
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}catch (Exception e){
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//this.setComplete();
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this.endTransaction();
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this.startNewTransaction();
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}
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name2 = nameDao.load(name2.getUuid());
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Assert.assertNotNull(name1);
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desig1 = (SpecimenTypeDesignation)typeDesignationDao.load(desig1.getUuid());
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name2.removeTypeDesignation(desig1);
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typeDesignationDao.delete(desig1); //now it can be deleted
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this.setComplete();
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this.endTransaction();
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this.startNewTransaction();
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desig2 = (SpecimenTypeDesignation)typeDesignationDao.load(desig2.getUuid());
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typeDesignationDao.delete(desig2); //desig2 is already orphaned and therefore can be deleted
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this.setComplete();
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this.endTransaction();
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// printDataSet(System.out, new String[]{"TaxonName","TaxonName_AUD","TypeDesignationBase","TypeDesignationBase_AUD",
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// "TaxonName_TypeDesignationBase","TaxonName_TypeDesignationBase_AUD",
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// "SpecimenOrObservationBase","SpecimenOrObservationBase_AUD",
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// "HomotypicalGroup","HomotypicalGroup_AUD"});
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}
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@Override
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public void createTestDataSet() throws FileNotFoundException {}
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}
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