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/**
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* Copyright (C) 2009 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.database.update.v30_40;
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import java.sql.SQLException;
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import java.util.List;
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import org.apache.logging.log4j.LogManager;import org.apache.logging.log4j.Logger;
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import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
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import eu.etaxonomy.cdm.database.ICdmDataSource;
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import eu.etaxonomy.cdm.database.update.CaseType;
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import eu.etaxonomy.cdm.database.update.ISchemaUpdaterStep;
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import eu.etaxonomy.cdm.database.update.SchemaUpdateResult;
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import eu.etaxonomy.cdm.database.update.SchemaUpdaterStepBase;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.RankClass;
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/**
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* @author a.mueller
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* @since 15.12.2013
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*/
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public class RankClassUpdater extends SchemaUpdaterStepBase {
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private static final Logger logger = LogManager.getLogger(RankClassUpdater.class);
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private static final String stepName = "Update rank class values";
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// **************************** STATIC METHODS ********************************/
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public static final RankClassUpdater NewInstance(List<ISchemaUpdaterStep> stepList){
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return new RankClassUpdater(stepList, stepName);
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}
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protected RankClassUpdater(List<ISchemaUpdaterStep> stepList, String stepName) {
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super(stepList, stepName);
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}
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@Override
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public void invoke(ICdmDataSource datasource, IProgressMonitor monitor,
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CaseType caseType, SchemaUpdateResult result) throws SQLException {
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try {
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//update representation label
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String sql;
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sql = caseType.replaceTableNames(" SELECT orderindex FROM @@DefinedTermBase@@ WHERE uuid = '%s'");
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Integer genusOrderIndex = (Integer)datasource.getSingleValue(String.format(sql, Rank.uuidGenus));
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Integer infraGenericOrderIndex = (Integer)datasource.getSingleValue(String.format(sql, Rank.uuidInfragenericTaxon));
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Integer speciesOrderIndex = (Integer)datasource.getSingleValue(String.format(sql, Rank.uuidSpecies));
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//suprageneric
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sql = caseType.replaceTableNames(
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" UPDATE @@DefinedTermBase@@ " +
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" SET rankClass = '%s' " +
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" WHERE DTYPE = 'Rank' AND orderindex < %d");
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datasource.executeUpdate(String.format(sql, RankClass.Suprageneric.getKey(), genusOrderIndex));
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//genus
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sql = caseType.replaceTableNames(
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" UPDATE @@DefinedTermBase@@ " +
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" SET rankClass = '%s' " +
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" WHERE DTYPE = 'Rank' AND orderindex = %d");
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datasource.executeUpdate(String.format(sql, RankClass.Genus.getKey(), genusOrderIndex));
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//infrageneric
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sql = caseType.replaceTableNames(
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" UPDATE @@DefinedTermBase@@ " +
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" SET rankClass = '%s' " +
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" WHERE DTYPE = 'Rank' AND orderindex > %d AND orderindex <= %d");
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datasource.executeUpdate(String.format(sql, RankClass.Infrageneric.getKey(), genusOrderIndex, infraGenericOrderIndex));
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//species group
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sql = caseType.replaceTableNames(
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" UPDATE @@DefinedTermBase@@ " +
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" SET rankClass = '%s' " +
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" WHERE DTYPE = 'Rank' AND orderindex > %d AND orderindex < %d");
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datasource.executeUpdate(String.format(sql, RankClass.SpeciesGroup.getKey(), infraGenericOrderIndex, speciesOrderIndex));
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//species
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sql = caseType.replaceTableNames(
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" UPDATE @@DefinedTermBase@@ " +
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" SET rankClass = '%s' " +
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" WHERE DTYPE = 'Rank' AND orderindex = %d");
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datasource.executeUpdate(String.format(sql, RankClass.Species.getKey(), speciesOrderIndex));
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//infraspecific
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sql = caseType.replaceTableNames(
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" UPDATE @@DefinedTermBase@@ " +
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" SET rankClass = '%s' " +
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" WHERE DTYPE = 'Rank' AND orderindex > %d");
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datasource.executeUpdate(String.format(sql, RankClass.Infraspecific.getKey(), speciesOrderIndex));
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return;
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} catch (Exception e) {
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String message = e.getMessage();
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monitor.warning(message, e);
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logger.warn(message);
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result.addException(e, message, this, "invoke");
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return;
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}
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}
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}
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