1
|
/**
|
2
|
* Copyright (C) 2009 EDIT
|
3
|
* European Distributed Institute of Taxonomy
|
4
|
* http://www.e-taxonomy.eu
|
5
|
*
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
8
|
*/
|
9
|
package eu.etaxonomy.cdm.validation;
|
10
|
|
11
|
import java.util.Set;
|
12
|
|
13
|
import javax.validation.ConstraintViolation;
|
14
|
|
15
|
import org.apache.logging.log4j.LogManager;import org.apache.logging.log4j.Logger;
|
16
|
import org.junit.Assert;
|
17
|
import org.junit.Before;
|
18
|
import org.junit.Test;
|
19
|
|
20
|
import eu.etaxonomy.cdm.model.agent.Person;
|
21
|
import eu.etaxonomy.cdm.model.name.IBotanicalName;
|
22
|
import eu.etaxonomy.cdm.model.name.IZoologicalName;
|
23
|
import eu.etaxonomy.cdm.model.name.NameRelationship;
|
24
|
import eu.etaxonomy.cdm.model.name.Rank;
|
25
|
import eu.etaxonomy.cdm.model.name.TaxonName;
|
26
|
import eu.etaxonomy.cdm.model.name.TaxonNameFactory;
|
27
|
import eu.etaxonomy.cdm.model.reference.Reference;
|
28
|
import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
|
29
|
import eu.etaxonomy.cdm.validation.constraint.BasionymsMustShareEpithetsAndAuthorsValidator;
|
30
|
|
31
|
/**
|
32
|
* NOTE: In this test, the words "valid" and "invalid", loaded though
|
33
|
* these terms are when applied to taxonomic names, only mean "passes the
|
34
|
* rules of this validator" or not and should not be confused with the strict
|
35
|
* nomenclatural and taxonomic sense of these words.
|
36
|
*
|
37
|
* @author ben.clark
|
38
|
*/
|
39
|
public class BasionymsMustShareEpithetsAndAuthorsTest extends ValidationTestBase {
|
40
|
|
41
|
@SuppressWarnings("unused")
|
42
|
private static final Logger logger = LogManager.getLogger(BasionymsMustShareEpithetsAndAuthorsTest.class);
|
43
|
|
44
|
private IBotanicalName name;
|
45
|
private TaxonName basionymName;
|
46
|
private Person author1;
|
47
|
private Person author2;
|
48
|
|
49
|
@Before
|
50
|
public void setUp() {
|
51
|
|
52
|
name = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
53
|
name.setGenusOrUninomial("Aus");
|
54
|
name.setSpecificEpithet("aus");
|
55
|
author1 = Person.NewTitledInstance("Person");
|
56
|
name.setBasionymAuthorship(author1);
|
57
|
|
58
|
author2 = Person.NewTitledInstance("Person2");
|
59
|
basionymName = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
|
60
|
basionymName.setGenusOrUninomial("Aus");
|
61
|
basionymName.setSpecificEpithet("aus");
|
62
|
basionymName.setCombinationAuthorship(author1);
|
63
|
|
64
|
name.addBasionym(basionymName);
|
65
|
}
|
66
|
|
67
|
/****************** TESTS *****************************/
|
68
|
|
69
|
@Test
|
70
|
public void testBasionymHasSameAuthorship() {
|
71
|
Assert.assertEquals(1, name.getNameRelations().size());
|
72
|
NameRelationship basRel = name.getNameRelations().iterator().next();
|
73
|
Set<ConstraintViolation<NameRelationship>> constraintViolations = validator.validate(basRel, Level3.class);
|
74
|
assertNoConstraintOnValidator((Set)constraintViolations, BasionymsMustShareEpithetsAndAuthorsValidator.class);
|
75
|
|
76
|
basionymName.setCombinationAuthorship(author2);
|
77
|
Assert.assertEquals(1, name.getNameRelations().size());
|
78
|
basRel = name.getNameRelations().iterator().next();
|
79
|
constraintViolations = validator.validate(basRel, Level3.class);
|
80
|
assertHasConstraintOnValidator((Set)constraintViolations, BasionymsMustShareEpithetsAndAuthorsValidator.class);
|
81
|
}
|
82
|
|
83
|
@Test
|
84
|
public void testSameSpecificLastEpithet() {
|
85
|
Assert.assertEquals(1, name.getNameRelations().size());
|
86
|
NameRelationship basRel = name.getNameRelations().iterator().next();
|
87
|
Set<ConstraintViolation<NameRelationship>> constraintViolations = validator.validate(basRel, Level3.class);
|
88
|
assertNoConstraintOnValidator((Set)constraintViolations, BasionymsMustShareEpithetsAndAuthorsValidator.class);
|
89
|
|
90
|
basionymName.setSpecificEpithet("bus");
|
91
|
Assert.assertEquals(1, name.getNameRelations().size());
|
92
|
basRel = name.getNameRelations().iterator().next();
|
93
|
constraintViolations = validator.validate(basRel, Level3.class);
|
94
|
assertHasConstraintOnValidator((Set)constraintViolations, BasionymsMustShareEpithetsAndAuthorsValidator.class);
|
95
|
}
|
96
|
|
97
|
@Test
|
98
|
public void testSameInfraSpecificEpithet() {
|
99
|
name.setInfraSpecificEpithet("bus");
|
100
|
basionymName.setInfraSpecificEpithet("bus");
|
101
|
Assert.assertEquals(1, name.getNameRelations().size());
|
102
|
NameRelationship basRel = name.getNameRelations().iterator().next();
|
103
|
Set<ConstraintViolation<NameRelationship>> constraintViolations = validator.validate(basRel, Level3.class);
|
104
|
assertNoConstraintOnValidator((Set)constraintViolations, BasionymsMustShareEpithetsAndAuthorsValidator.class);
|
105
|
|
106
|
basionymName.setInfraSpecificEpithet("heptodi");
|
107
|
Assert.assertEquals(1, name.getNameRelations().size());
|
108
|
basRel = name.getNameRelations().iterator().next();
|
109
|
constraintViolations = validator.validate(basRel, Level3.class);
|
110
|
assertHasConstraintOnValidator((Set)constraintViolations, BasionymsMustShareEpithetsAndAuthorsValidator.class);
|
111
|
}
|
112
|
|
113
|
@Test
|
114
|
public void testSameLastEpithetSpecificInfraSpecific() {
|
115
|
name.setInfraSpecificEpithet("bus");
|
116
|
basionymName.setSpecificEpithet("bus");
|
117
|
Assert.assertEquals(1, name.getNameRelations().size());
|
118
|
NameRelationship basRel = name.getNameRelations().iterator().next();
|
119
|
Set<ConstraintViolation<NameRelationship>> constraintViolations = validator.validate(basRel, Level3.class);
|
120
|
assertNoConstraintOnValidator((Set)constraintViolations, BasionymsMustShareEpithetsAndAuthorsValidator.class);
|
121
|
|
122
|
basionymName.setSpecificEpithet("heptodi");
|
123
|
Assert.assertEquals(1, name.getNameRelations().size());
|
124
|
basRel = name.getNameRelations().iterator().next();
|
125
|
constraintViolations = validator.validate(basRel, Level3.class);
|
126
|
assertHasConstraintOnValidator((Set)constraintViolations, BasionymsMustShareEpithetsAndAuthorsValidator.class);
|
127
|
}
|
128
|
|
129
|
@Test
|
130
|
public void testSameLastEpithetInfraSpecificSpecific() {
|
131
|
name.setSpecificEpithet("bus");
|
132
|
basionymName.setInfraSpecificEpithet("bus");
|
133
|
Assert.assertEquals(1, name.getNameRelations().size());
|
134
|
NameRelationship basRel = name.getNameRelations().iterator().next();
|
135
|
Set<ConstraintViolation<NameRelationship>> constraintViolations = validator.validate(basRel, Level3.class);
|
136
|
assertNoConstraintOnValidator((Set)constraintViolations, BasionymsMustShareEpithetsAndAuthorsValidator.class);
|
137
|
|
138
|
basionymName.setInfraSpecificEpithet("heptodi");
|
139
|
Assert.assertEquals(1, name.getNameRelations().size());
|
140
|
basRel = name.getNameRelations().iterator().next();
|
141
|
constraintViolations = validator.validate(basRel, Level3.class);
|
142
|
assertHasConstraintOnValidator((Set)constraintViolations, BasionymsMustShareEpithetsAndAuthorsValidator.class);
|
143
|
}
|
144
|
|
145
|
@Test
|
146
|
public void testZoologicalReference() {
|
147
|
Reference nomRef = ReferenceFactory.newBook();
|
148
|
Reference nomRef2 = ReferenceFactory.newBook();
|
149
|
|
150
|
IZoologicalName zooName = TaxonNameFactory.NewZoologicalInstance(Rank.SPECIES());
|
151
|
zooName.setGenusOrUninomial("Aus");
|
152
|
zooName.setSpecificEpithet("aus");
|
153
|
zooName.setBasionymAuthorship(author1);
|
154
|
zooName.setNomenclaturalReference(nomRef);
|
155
|
IZoologicalName originalCombination = TaxonNameFactory.NewZoologicalInstance(Rank.SPECIES());
|
156
|
originalCombination.setGenusOrUninomial("Aus");
|
157
|
originalCombination.setSpecificEpithet("aus");
|
158
|
originalCombination.setCombinationAuthorship(author1);
|
159
|
originalCombination.setNomenclaturalReference(nomRef);
|
160
|
zooName.addBasionym(TaxonName.castAndDeproxy(originalCombination));
|
161
|
|
162
|
|
163
|
Assert.assertEquals(1, zooName.getNameRelations().size());
|
164
|
NameRelationship basRel = zooName.getNameRelations().iterator().next();
|
165
|
Set<ConstraintViolation<NameRelationship>> constraintViolations = validator.validate(basRel, Level3.class);
|
166
|
assertNoConstraintOnValidator((Set)constraintViolations, BasionymsMustShareEpithetsAndAuthorsValidator.class);
|
167
|
|
168
|
originalCombination.setNomenclaturalReference(nomRef2);
|
169
|
Assert.assertEquals(1, zooName.getNameRelations().size());
|
170
|
basRel = zooName.getNameRelations().iterator().next();
|
171
|
constraintViolations = validator.validate(basRel, Level3.class);
|
172
|
assertHasConstraintOnValidator((Set)constraintViolations, BasionymsMustShareEpithetsAndAuthorsValidator.class);
|
173
|
|
174
|
//reset
|
175
|
originalCombination.setNomenclaturalReference(nomRef);
|
176
|
Assert.assertEquals(1, zooName.getNameRelations().size());
|
177
|
basRel = zooName.getNameRelations().iterator().next();
|
178
|
constraintViolations = validator.validate(basRel, Level3.class);
|
179
|
assertNoConstraintOnValidator((Set)constraintViolations, BasionymsMustShareEpithetsAndAuthorsValidator.class);
|
180
|
|
181
|
zooName.setNomenclaturalMicroReference("A");
|
182
|
originalCombination.setNomenclaturalMicroReference("B");
|
183
|
Assert.assertEquals(1, zooName.getNameRelations().size());
|
184
|
basRel = zooName.getNameRelations().iterator().next();
|
185
|
constraintViolations = validator.validate(basRel, Level3.class);
|
186
|
assertHasConstraintOnValidator((Set)constraintViolations, BasionymsMustShareEpithetsAndAuthorsValidator.class);
|
187
|
|
188
|
}
|
189
|
|
190
|
|
191
|
|
192
|
}
|