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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.model.name;
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import java.util.ArrayList;
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import java.util.List;
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import java.util.Set;
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import java.util.UUID;
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import javax.xml.bind.annotation.XmlEnum;
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import javax.xml.bind.annotation.XmlEnumValue;
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import javax.xml.bind.annotation.XmlType;
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import org.apache.commons.lang3.StringUtils;
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import org.apache.logging.log4j.LogManager;import org.apache.logging.log4j.Logger;
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import eu.etaxonomy.cdm.common.DOI;
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import eu.etaxonomy.cdm.common.URI;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.term.EnumeratedTermVoc;
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import eu.etaxonomy.cdm.model.term.IEnumTerm;
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/**
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* The class for the nomenclature code edition of the 5 nomenclatural codes (ICNP, ICBN, ICNCP, ICZN and ICVCN)
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* ruling {@link TaxonName taxon names}.
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* <P>
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* See also https://www.wikidata.org/wiki/Q693148
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* <P>
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* @see NomenclaturalCode
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*
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* @author a.mueller
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* @since 23.07.2019
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*/
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@XmlType(name = "NomenclaturalCodeEdition")
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@XmlEnum
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public enum NomenclaturalCodeEdition implements IEnumTerm<NomenclaturalCodeEdition> {
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//0
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/**
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* International Code of Nomenclature for algae, fungi, and plants.
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* Shenzhen 2017
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* Turland, N. J., Wiersema, J. H., Barrie, F. R., Greuter, W., Hawksworth, D. L., Herendeen, P. S., Knapp, S., Kusber, W.-H., Li, D.-Z., Marhold, K., May, T. W., McNeill, J., Monro, A. M., Prado, J., Price, M. J. & Smith, G. F. (eds.) 2018: International Code of Nomenclature for algae, fungi, and plants (Shenzhen Code) adopted by the Nineteenth International Botanical Congress Shenzhen, China, July 2017. Regnum Vegetabile 159. Glashütten: Koeltz Botanical Books. DOI https://doi.org/10.12705/Code.2018
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*/
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@XmlEnumValue("Shenzhen")
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ICN_2017_SHENZHEN(UUID.fromString("87e8ac37-97c4-43c7-a016-43f1a5c3503f"), "ICN", "Shenzhen", 2017, NomenclaturalCode.ICNAFP, "Q56701992","10.12705/Code.2018" ),
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//1
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/**
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* International Code of Nomenclature for algae, fungi, and plants.
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* Melbourne 2011
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*/
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@XmlEnumValue("Melbourne")
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ICN_2011_MELBOURNE(UUID.fromString("ea2ebf9e-e3eb-4aaf-8007-c6f9f8877451"), "ICN", "Melbourne", 2011, NomenclaturalCode.ICNAFP, "Q15895076", null),
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//2
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/**
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* International Code of Botanical Nomenclature.
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* Vienna 2005
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*/
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@XmlEnumValue("Vienna")
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ICN_2005_VIENNA(UUID.fromString("d8f9f3d6-96af-4d83-a8d5-04ff62ba4d9c"), "ICBN", "Vienna", 2005, NomenclaturalCode.ICNAFP, "Q15895126", null),
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//3
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/**
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* International Code of Botanical Nomenclature.
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* Saint Louis 1999
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*/
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@XmlEnumValue("Saint Louis")
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ICN_1999_ST_LOUIS(UUID.fromString("2746b72e-43be-4073-90d0-494a7afac271"), "ICBN", "Saint Louis", 1999, NomenclaturalCode.ICNAFP, "Q15895151", null),
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//4
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/**
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* International Code of Botanical Nomenclature.
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* Tokyo 1993
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*/
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@XmlEnumValue("Tokyo")
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ICN_1993_TOKYO(UUID.fromString("5a846761-839f-4f77-b614-7181b9b29355"), "ICBN", "Tokyo", 1993, NomenclaturalCode.ICNAFP, "Q15895201", null),
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//5
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/**
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* International Code of Botanical Nomenclature.
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* Berlin 1987
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*/
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@XmlEnumValue("Berlin")
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ICN_1987_BERLIN(UUID.fromString("5702fc16-e194-4ad2-bdaf-4451af523db2"), "ICBN", "Berlin", 1987, NomenclaturalCode.ICNAFP, null, null),
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//6
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/**
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* International Code of Botanical Nomenclature.
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* Sydney 1981
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*/
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@XmlEnumValue("Sydney")
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ICN_1981_Sydney(UUID.fromString("f956c556-6d79-4e0f-adeb-ed9d81f2fa24"), "ICBN", "Sydney", 1981, NomenclaturalCode.ICNAFP, null, null),
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//7
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/**
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* International Code of Botanical Nomenclature.
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* Leningrad 1975
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*/
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@XmlEnumValue("Leningrad")
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ICN_1975_TOKYO(UUID.fromString("f52e50b4-4c75-42dd-8efe-39cd966da712"), "ICBN", "Leningrad", 1975, NomenclaturalCode.ICNAFP, null, null),
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//8
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/**
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* International Code of Botanical Nomenclature.
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* Seattle 1969
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*/
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@XmlEnumValue("Seattle")
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ICN_1969_Seattle(UUID.fromString("2d19b5af-27cc-428e-affb-8a06563ff9cd"), "ICBN", "Seattle", 1969, NomenclaturalCode.ICNAFP, null, null),
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//9
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/**
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* International Code of Botanical Nomenclature.
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* Stockholm 1952
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*/
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@XmlEnumValue("Stockholm")
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ICN_1952_Stockholm(UUID.fromString("a0c07e5f-9b2b-4cd7-9f14-acd4729f175a"), "ICBN", "Stockholm", 1952, NomenclaturalCode.ICNAFP, null, null),
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//10
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/**
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* International Code of Botanical Nomenclature.
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* Cambridge Rules 1935
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*/
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@XmlEnumValue("Cambridge")
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//TODO abbrev correct?
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ICN_1935_CAMBRIDGE(UUID.fromString("e6f7e578-2ce5-434d-9904-aaf2a6e06c43"), "ICBN", "Cambrdige", 1935, NomenclaturalCode.ICNAFP, null, null),
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//11
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/**
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* International Code of Botanical Nomenclature.
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* Vienna Rules 1905
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*/
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@XmlEnumValue("Vienna 1905")
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//TODO abbrev correct?
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ICN_1905_VIENNA(UUID.fromString("23781153-540f-4c54-a5ae-5d6b6f490332"), "ICBN", "Vienna", 1905, NomenclaturalCode.ICNAFP, null, null),
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//12
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/**
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* International Code of Botanical Nomenclature.
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* Laws of botanical nomenclature 1867
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*/
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@XmlEnumValue("Laws")
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//TODO abbrev correct?
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ICN_1867_LAWS(UUID.fromString("230314c3-0bb0-4488-8597-f4ef63d27781"), "ICBN", "Laws of botanical nomenclature", 1867, NomenclaturalCode.ICNAFP, null, null),
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//*** ICZN **/
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//z1
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/**
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* International Code of Zoological Nomenclature. Fourth edition. The International Trust for Zoological Nomenclature, London, UK.
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* https://en.wikipedia.org/wiki/International_Code_of_Zoological_Nomenclature#Versions
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*/
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@XmlEnumValue("ICZN_1999")
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ICZN_1999(UUID.fromString("98f61693-67c5-40e1-a802-4989cb5ac4eb"), "ICZN", null, 1999, NomenclaturalCode.ICZN, null, "10.5962/bhl.title.50608"),
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//z2
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/**
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* International Code of Zoological Nomenclature. Third edition. The International Trust for Zoological Nomenclature, London, UK.
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* https://en.wikipedia.org/wiki/International_Code_of_Zoological_Nomenclature#Versions
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*/
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@XmlEnumValue("ICZN_1985")
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ICZN_1985(UUID.fromString("093110c8-f7e8-4f86-a794-e8e7b17c99d6"), "ICZN", null, 1985, NomenclaturalCode.ICZN, null, "10.5962/bhl.title.50611"),
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//z3
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/**
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* International Code of Zoological Nomenclature. Second edition. The International Trust for Zoological Nomenclature, London, UK.
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* https://en.wikipedia.org/wiki/International_Code_of_Zoological_Nomenclature#Versions
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*/
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@XmlEnumValue("ICZN_1964")
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ICZN_1964(UUID.fromString("2b4a9e59-45dd-444b-bf93-741bc727c38c"), "ICZN", null, 1964, NomenclaturalCode.ICZN, null, "10.5962/bhl.title.50606"),
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//z4
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/**
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* International Code of Zoological Nomenclature: adopted by the XV International Congress of Zoology. The International Trust for Zoological Nomenclature, London, UK.
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* https://en.wikipedia.org/wiki/International_Code_of_Zoological_Nomenclature#Versions
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*/
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@XmlEnumValue("ICZN_1961")
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ICZN_1961(UUID.fromString("b9de5507-1171-496c-8a8d-8af47e42724e"), "ICZN", null, 1961, NomenclaturalCode.ICZN, null, "10.5962/bhl.title.50303"),
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//TODO older versions, see wikipedia
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//bact1
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/**
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* Parker, C.T., Tindall, B.J. & Garrity, G.M. (2019) International Code of Nomenclature of Prokaryotes. 2008 Revision. Microbiology Society
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* https://en.wikipedia.org/wiki/International_Code_of_Nomenclature_of_Prokaryotes#Versions
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*/
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@XmlEnumValue("ICNP_2008")
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ICNP_2008(UUID.fromString("1297a8e9-dfde-4db7-9f93-672453e8b3e6"), "ICNP", null, 2008, NomenclaturalCode.ICNP, null, "10.1099/ijsem.0.000778"),
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//bact2
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/**
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* Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R. & Clark, W.A. (1992). International Code of Nomenclature of Bacteria. Bacteriological Code. 1990 Revision. American Society for Microbiology, Washington, D.C., ISBN 1-55581-039-X
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* https://en.wikipedia.org/wiki/International_Code_of_Nomenclature_of_Prokaryotes#Versions
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*/
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@XmlEnumValue("ICNP_1990")
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ICNP_1990(UUID.fromString("fd5d6dd3-de58-4244-8290-c8d89323f163"), "ICNB", null, 1990, NomenclaturalCode.ICNP, null, "10.5962/bhl.title.50303"),
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//bact3
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/**
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* Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R. & Clark, W.A. (1975). International Code of Nomenclature of Bacteria. 1975 Revision. American Society of Microbiology, Washington, D.C
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* https://en.wikipedia.org/wiki/International_Code_of_Nomenclature_of_Prokaryotes#Versions
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*/
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@XmlEnumValue("ICNP_1975")
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ICNP_1975(UUID.fromString("2dafaf3c-abf6-4baf-82db-3332db25d654"), "ICNB", null, 1975, NomenclaturalCode.ICNP, null, null),
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213
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//cult plants 1
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/**
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* ISHS Secretariat: ICNCP - International Code for the Nomenclature for Cultivated Plants (9th edition). International Society for Horticultural Science, 15. Juni 2016
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* https://www.ishs.org/news/icncp-international-code-nomenclature-cultivated-plants-9th-edition
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*/
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@XmlEnumValue("ICNCP_2016")
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ICNCP_2016(UUID.fromString("e395e7be-405f-4214-a3a2-2b19eef6a055"), "ICNCP", null, 2016, NomenclaturalCode.ICNCP, null, null),
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221
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//cult plants 2
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/**
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* International Code of Nomenclature for Cultivated Plants. 8th edition. [Scripta Horticulturae 10]
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* https://www.ishs.org/news/icncp-international-code-nomenclature-cultivated-plants-9th-edition
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*/
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@XmlEnumValue("ICNCP_2009")
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ICNCP_2009(UUID.fromString("bc66202a-0ffb-4cf3-a1c9-520efd5e76e9"), "ICNCP", null, 2009, NomenclaturalCode.ICNCP, null, null),
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//cult plants 3
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/**
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* SHS (International Society for Horticultural Science; Hrsg.): International Code of Nomenclature for Cultivated Plants, 7th edition. In: Acta Horticulturae Band 647, 2004. ISBN 90-6605-527-8.
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* https://de.wikipedia.org/wiki/Internationaler_Code_der_Nomenklatur_der_Kulturpflanzen
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*/
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@XmlEnumValue("ICNCP_2004")
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ICNCP_2004(UUID.fromString("a29abcee-1f34-4320-afad-eb7ee23cc473"), "ICNCP", null, 2004, NomenclaturalCode.ICNCP, null, null),
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237
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//virus1
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/**
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* https://talk.ictvonline.org/ictv-reports/ictv_online_report/
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241
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* 10th report
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*/
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@XmlEnumValue("ICVCN_2018")
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//TODO abbrev correct?
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ICVCN_2018(UUID.fromString("6a0debf3-7932-4b0c-b1b1-46641c273f36"), "ICVCN", null, 2019, NomenclaturalCode.ICVCN, null, null),
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246
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//virus2
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/**
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* https://talk.ictvonline.org/ictv-reports/ictv_9th_report/
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* 9th report
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*/
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@XmlEnumValue("ICVCN_2011")
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//TODO abbrev correct?
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254
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ICVCN_2011(UUID.fromString("b55c0209-59e2-4fa2-9d64-63addfb15d6b"), "ICVCN", null, 2011, NomenclaturalCode.ICVCN, null, null),
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255
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;
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@SuppressWarnings("unused")
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private static final Logger logger = LogManager.getLogger(NomenclaturalCodeEdition.class);
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261
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private static final String WIKIDATA_BASE_URL = "https://www.wikidata.org/wiki/";
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private String location;
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private Integer year;
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private NomenclaturalCode code;
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private String wikiDataId;
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private DOI doi;
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private String abbrev;
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private NomenclaturalCodeEdition(UUID uuid, String abbrev, String location, Integer year, NomenclaturalCode code, String wikiDataId, String strDoi ){
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delegateVocTerm = EnumeratedTermVoc.addTerm(getClass(), this, uuid, makeTitleCache(location, code, year), code.getKey() + year, null);
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this.location = location;
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this.year=year;
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this.code=code;
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this.wikiDataId = wikiDataId;
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this.doi = (strDoi==null) ? null:DOI.fromString(strDoi);
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}
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/**
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* @param location
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* @param code
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* @param year
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* @return
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*/
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private String makeTitleCache(String location, NomenclaturalCode code, Integer year) {
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return (StringUtils.isNotBlank(location)? location: code.getTitleCache()) + " " + year;
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}
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public String getTitleCache() {
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return getLabel();
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}
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@Override
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public String toString() {
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return this.name();
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}
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public boolean isNonViral() {
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return this.code.isNonViral();
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}
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public boolean isZoological() {
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return this.code.isZoological();
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}
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|
310
|
public boolean isBotanical() {
|
|
311
|
return this.code.isBotanical();
|
|
312
|
}
|
|
313
|
public boolean isCultivar() {
|
|
314
|
return this.code.isCultivar();
|
|
315
|
}
|
|
316
|
public boolean isBacterial() {
|
|
317
|
return this.code.isBacterial();
|
|
318
|
}
|
|
319
|
public boolean isViral() {
|
|
320
|
return this.code.isViral();
|
|
321
|
}
|
|
322
|
public boolean isFungus() {
|
|
323
|
return this.code.isFungus();
|
|
324
|
}
|
|
325
|
|
|
326
|
|
|
327
|
// public static NomenclaturalCodeEdition fromString(String string){
|
|
328
|
// xx;
|
|
329
|
// for(NomenclaturalCodeEdition code : NomenclaturalCodeEdition.values()){
|
|
330
|
// if(code.name().equalsIgnoreCase(string)) {
|
|
331
|
// return code;
|
|
332
|
// }
|
|
333
|
// }
|
|
334
|
// return null;
|
|
335
|
// }
|
|
336
|
|
|
337
|
public static List<NomenclaturalCodeEdition> forCode(NomenclaturalCode code){
|
|
338
|
List<NomenclaturalCodeEdition> result = new ArrayList<>();
|
|
339
|
|
|
340
|
Set<NomenclaturalCode> allCodes = code.getGeneralizationOf(true);
|
|
341
|
allCodes.add(code);
|
|
342
|
|
|
343
|
for(NomenclaturalCodeEdition edition : NomenclaturalCodeEdition.values()){
|
|
344
|
for (NomenclaturalCode nomCode: allCodes){
|
|
345
|
if(edition.getCode().equals(nomCode) && !result.contains(nomCode)) {
|
|
346
|
result.add(edition);
|
|
347
|
}
|
|
348
|
}
|
|
349
|
}
|
|
350
|
return result;
|
|
351
|
}
|
|
352
|
|
|
353
|
public String getAbbrev() {
|
|
354
|
return abbrev;
|
|
355
|
}
|
|
356
|
|
|
357
|
public String getLocation() {
|
|
358
|
return location;
|
|
359
|
}
|
|
360
|
public Integer getYear() {
|
|
361
|
return year;
|
|
362
|
}
|
|
363
|
public NomenclaturalCode getCode() {
|
|
364
|
return code;
|
|
365
|
}
|
|
366
|
public String getWikiDataId() {
|
|
367
|
return wikiDataId;
|
|
368
|
}
|
|
369
|
public URI getWikiDataUri() {
|
|
370
|
return StringUtils.isEmpty(wikiDataId)? null: URI.create(WIKIDATA_BASE_URL + wikiDataId);
|
|
371
|
}
|
|
372
|
public DOI getDoi() {
|
|
373
|
return this.doi;
|
|
374
|
}
|
|
375
|
|
|
376
|
// *************************** DELEGATE **************************************/
|
|
377
|
|
|
378
|
private static EnumeratedTermVoc<NomenclaturalCodeEdition> delegateVoc;
|
|
379
|
private IEnumTerm<NomenclaturalCodeEdition> delegateVocTerm;
|
|
380
|
|
|
381
|
static {
|
|
382
|
delegateVoc = EnumeratedTermVoc.getVoc(NomenclaturalCodeEdition.class);
|
|
383
|
}
|
|
384
|
|
|
385
|
@Override
|
|
386
|
public String getKey(){return delegateVocTerm.getKey();}
|
|
387
|
|
|
388
|
@Override
|
|
389
|
public String getLabel(){return delegateVocTerm.getLabel();}
|
|
390
|
|
|
391
|
@Override
|
|
392
|
public String getLabel(Language language){return delegateVocTerm.getLabel(language);}
|
|
393
|
|
|
394
|
|
|
395
|
@Override
|
|
396
|
public UUID getUuid() {return delegateVocTerm.getUuid();}
|
|
397
|
|
|
398
|
@Override
|
|
399
|
public NomenclaturalCodeEdition getKindOf() {return delegateVocTerm.getKindOf();}
|
|
400
|
|
|
401
|
@Override
|
|
402
|
public Set<NomenclaturalCodeEdition> getGeneralizationOf() {return delegateVocTerm.getGeneralizationOf();}
|
|
403
|
|
|
404
|
@Override
|
|
405
|
public boolean isKindOf(NomenclaturalCodeEdition ancestor) {return delegateVocTerm.isKindOf(ancestor); }
|
|
406
|
|
|
407
|
@Override
|
|
408
|
public Set<NomenclaturalCodeEdition> getGeneralizationOf(boolean recursive) {return delegateVocTerm.getGeneralizationOf(recursive);}
|
|
409
|
|
|
410
|
|
|
411
|
public static NomenclaturalCodeEdition getByKey(String key){return delegateVoc.getByKey(key);}
|
|
412
|
public static NomenclaturalCodeEdition getByUuid(UUID uuid) {return delegateVoc.getByUuid(uuid);}
|
|
413
|
}
|