EDIT

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.model.molecular;

import javax.persistence.Column;

import javax.persistence.Entity;

import javax.persistence.FetchType;

import javax.persistence.ManyToOne;

import javax.xml.bind.annotation.XmlAccessType;

import javax.xml.bind.annotation.XmlAccessorType;

import javax.xml.bind.annotation.XmlElement;

import javax.xml.bind.annotation.XmlIDREF;

import javax.xml.bind.annotation.XmlRootElement;

import javax.xml.bind.annotation.XmlSchemaType;

import javax.xml.bind.annotation.XmlType;

import org.apache.logging.log4j.LogManager;import org.apache.logging.log4j.Logger;

import org.hibernate.envers.Audited;

import org.hibernate.search.annotations.Field;

import eu.etaxonomy.cdm.model.common.EventBase;

import eu.etaxonomy.cdm.model.occurrence.MaterialOrMethodEvent;

import eu.etaxonomy.cdm.model.term.DefinedTerm;

/**

 * Cloning is a method used in {@link Amplification DNA amplification} for multiplying the base

 * material. Various cloning methods exist. Classical cloning methods use bacteria for cloning

 * while the latest approaches use other techniques.

 *

 * @author a.mueller

 * @since 2013-07-11

 *

 */

@XmlAccessorType(XmlAccessType.FIELD)

@XmlType(name = "Cloning", propOrder = {

	"strain",

	"forwardPrimer",

	"reversePrimer"

})

@XmlRootElement(name = "Cloning")

@Entity

@Audited

public class Cloning extends MaterialOrMethodEvent implements Cloneable{

	private static final long serialVersionUID = 6179007910988646989L;

	@SuppressWarnings("unused")

	private static final Logger logger = LogManager.getLogger(Cloning.class);

	/** @see #getStrain() */

    @XmlElement(name = "strain")

	@Field

    @Column(length=100)

	private String strain;

    /** @see #getForwardPrimer() */

    @XmlElement(name = "ForwardPrimer")

    @XmlIDREF

    @XmlSchemaType(name = "IDREF")

    @ManyToOne(fetch=FetchType.LAZY)

    private Primer forwardPrimer;

    /** @see #getReversePrimer()*/

    @XmlElement(name = "ReversePrimer")

    @XmlIDREF

    @XmlSchemaType(name = "IDREF")

    @ManyToOne(fetch=FetchType.LAZY)

    private Primer reversePrimer;

// ******************** FACTORY METHOD ******************/

    public static Cloning NewInstance(){

    	return new Cloning();

    }

    public static Cloning NewInstance(DefinedTerm definedMaterialOrMethod, String methodText, String strain, Primer forwardPrimer, Primer reversePrimer){

    	return new Cloning(definedMaterialOrMethod, methodText, strain, forwardPrimer, reversePrimer);

    }

// ********************* CONSTRUCTOR ********************/

    //made protected to fix a java.lang.InstantiationException which occurred while loading

    //see https://stackoverflow.com/questions/7273125/hibernate-envers-and-javassist-enhancement-failed-exception

    protected Cloning(){}

    protected Cloning(DefinedTerm definedMaterialOrMethod, String methodText, String strain, Primer forwardPrimer, Primer reversePrimer){

    	super(definedMaterialOrMethod, methodText);

    	this.strain = strain;

    	this.forwardPrimer = forwardPrimer;

    	this.reversePrimer = reversePrimer;

    }

// ********************* GETTER / SETTER ********************/

	/**

	 * The primer used for forward cloning.

	 * @see #getReversePrimer()

	 */

	public Primer getForwardPrimer() {

		return forwardPrimer;

	}

	/**

	 * @see #getForwardPrimer()

	 * @see #getReversePrimer()

	 */

	public void setForwardPrimer(Primer forwardPrimer) {

		this.forwardPrimer = forwardPrimer;

	}

	/**

	 * The primer used for reverse cloning.

	 * @see #getForwardPrimer()

	 */

	public Primer getReversePrimer() {

		return reversePrimer;

	}

	/**

	 * @see #getReversePrimer()

	 * @see #getForwardPrimer()

	 */

	public void setReversePrimer(Primer reversePrimer) {

		this.reversePrimer = reversePrimer;

	}

	public String getStrain() {

		return strain;

	}

	public void setStrain(String strain) {

		this.strain = strain;

	}

// ********************* CLONE ********************/

	/**

	 * Clones <i>this</i> {@link Cloning}. This is a shortcut that enables to create

	 * a new instance that differs only slightly from <i>this</i> cloning by

	 * modifying only some of the attributes.<BR><BR>

	 *

	 *

	 * @see EventBase#clone()

	 * @see java.lang.Object#clone()

	 */

	@Override

	public Cloning clone()  {

		Cloning result = (Cloning)super.clone();

		//don't change strain, forwardPrimer, backwardPrimer

		return result;

	}

}