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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.specimen.excel.in;
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import eu.etaxonomy.cdm.common.URI;
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import java.util.HashMap;
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import java.util.Map;
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import java.util.UUID;
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import org.apache.logging.log4j.LogManager;import org.apache.logging.log4j.Logger;
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import eu.etaxonomy.cdm.database.ICdmDataSource;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator;
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import eu.etaxonomy.cdm.io.common.ImportConfiguratorBase;
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import eu.etaxonomy.cdm.io.common.mapping.IInputTransformer;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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/**
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* @author p.kelbert
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* @since 29.10.2008
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* @version 1.0
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*/
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public class SpecimenSynthesysExcelImportConfigurator extends ImportConfiguratorBase<SpecimenSynthesysExcelImportState, URI> implements IImportConfigurator {
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private static final Logger logger = LogManager.getLogger(SpecimenSynthesysExcelImportConfigurator.class);
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private boolean doParsing = false;
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private boolean reuseMetadata = false;
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private boolean reuseTaxon = false;
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private String taxonReference = null;
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private boolean askForDate = false;
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private Map<String, Team> titleCacheTeam;
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private Map<String, Person> titleCachePerson;
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private String defaultAuthor="";
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private Map<String,UUID> namedAreaDecisions = new HashMap<String,UUID>();
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private Reference dataReference;
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private boolean debugInstitutionOnly = false;
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/**
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* @return the debugInstitutionOnly
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*/
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public boolean isDebugInstitutionOnly() {
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return debugInstitutionOnly;
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}
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//TODO
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private static IInputTransformer defaultTransformer = null;
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@Override
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@SuppressWarnings("unchecked")
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protected void makeIoClassList(){
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ioClassList = new Class[]{
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SpecimenSythesysExcelImport.class,
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};
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};
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public static SpecimenSynthesysExcelImportConfigurator NewInstance(URI uri, ICdmDataSource destination){
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return new SpecimenSynthesysExcelImportConfigurator(uri, destination);
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}
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public static SpecimenSynthesysExcelImportConfigurator NewInstance(URI uri, ICdmDataSource destination, boolean interact){
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return new SpecimenSynthesysExcelImportConfigurator(uri, destination,interact);
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}
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/**
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* @param berlinModelSource
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* @param sourceReference
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* @param destination
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*/
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private SpecimenSynthesysExcelImportConfigurator(URI uri, ICdmDataSource destination) {
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super(defaultTransformer);
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setSource(uri);
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setDestination(destination);
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}
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/**
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* @param berlinModelSource
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* @param sourceReference
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* @param destination
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*/
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private SpecimenSynthesysExcelImportConfigurator(URI uri, ICdmDataSource destination, boolean interact) {
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super(defaultTransformer);
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setSource(uri);
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setDestination(destination);
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setInteractWithUser(interact);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.IImportConfigurator#getNewState()
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*/
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@Override
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public SpecimenSynthesysExcelImportState getNewState() {
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return new SpecimenSynthesysExcelImportState(this);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.ImportConfiguratorBase#getSourceReference()
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*/
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@Override
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public Reference getSourceReference() {
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//TODO
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if (this.sourceReference == null){
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logger.warn("getSource Reference not yet fully implemented");
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sourceReference = ReferenceFactory.newDatabase();
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sourceReference.setTitleCache("Specimen import", true);
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}
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return sourceReference;
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}
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public void setTaxonReference(String taxonReference) {
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this.taxonReference = taxonReference;
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}
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public Reference getTaxonReference() {
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//TODO
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if (this.taxonReference == null){
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logger.info("getTaxonReference not yet fully implemented");
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}
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return sourceReference;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.IImportConfigurator#getSourceNameString()
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*/
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@Override
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public String getSourceNameString() {
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if (this.getSource() == null){
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return null;
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}else{
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return this.getSource().toString();
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}
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}
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public void setDoAutomaticParsing(boolean doParsing){
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this.doParsing=doParsing;
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}
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public boolean getDoAutomaticParsing(){
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return this.doParsing;
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}
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public void setReUseExistingMetadata(boolean reuseMetadata){
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this.reuseMetadata = reuseMetadata;
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}
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public boolean getReUseExistingMetadata(){
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return this.reuseMetadata;
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}
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public void setReUseTaxon(boolean reuseTaxon){
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this.reuseTaxon = reuseTaxon;
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}
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public boolean getDoReUseTaxon(){
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return this.reuseTaxon;
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}
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public boolean doAskForDate() {
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return askForDate;
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}
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public void setAskForDate(boolean askForDate) {
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this.askForDate = askForDate;
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}
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/**
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* @param titleCacheTeam
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*/
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public void setTeams(Map<String, Team> titleCacheTeam) {
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this.titleCacheTeam = titleCacheTeam;
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System.out.println(titleCacheTeam);
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}
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/**
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* @param titleCachePerson
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*/
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public void setPersons(Map<String, Person> titleCachePerson) {
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this.titleCachePerson=titleCachePerson;
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System.out.println(titleCachePerson);
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}
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public Map<String, Team> getTeams() {
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return titleCacheTeam;
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}
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public Map<String, Person> getPersons() {
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return titleCachePerson;
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}
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/**
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* @param string
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*/
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public void setDefaultAuthor(String string) {
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defaultAuthor=string;
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}
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public String getDefaultAuthor(){
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return defaultAuthor;
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}
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public Map<String,UUID> getNamedAreaDecisions() {
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return namedAreaDecisions;
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}
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public void setNamedAreaDecisions(Map<String,UUID> namedAreaDecisions) {
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this.namedAreaDecisions = namedAreaDecisions;
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}
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public void putNamedAreaDecision(String areaStr,UUID uuid){
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this.namedAreaDecisions.put(areaStr,uuid);
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}
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public UUID getNamedAreaDecision(String areaStr){
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return namedAreaDecisions.get(areaStr);
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}
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/**
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* @param ref
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*/
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public void setDataReference(Reference ref) {
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this.dataReference=ref;
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}
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public Reference getDataReference() {
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return dataReference;
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}
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/**
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* @param b
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*/
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public void setDebugInstitutionOnly(boolean b) {
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this.debugInstitutionOnly=b;
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}
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}
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