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/**
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* Copyright (C) 2009 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.dwca.in;
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import java.util.ArrayList;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.logging.log4j.LogManager;import org.apache.logging.log4j.Logger;
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import eu.etaxonomy.cdm.io.stream.IPartitionableConverter;
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import eu.etaxonomy.cdm.io.stream.IReader;
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import eu.etaxonomy.cdm.io.stream.ListReader;
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import eu.etaxonomy.cdm.io.stream.MappedCdmBase;
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import eu.etaxonomy.cdm.io.stream.PartitionableConverterBase;
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import eu.etaxonomy.cdm.io.stream.StreamItem;
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import eu.etaxonomy.cdm.io.stream.terms.TermUri;
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import eu.etaxonomy.cdm.model.agent.Institution;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.permission.User;
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import eu.etaxonomy.cdm.model.reference.Reference;
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/**
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* @author a.mueller
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* @since 22.11.2011
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*
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*/
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public class EolAgent2CdmConverter extends PartitionableConverterBase<DwcaDataImportConfiguratorBase, DwcaDataImportStateBase<DwcaDataImportConfiguratorBase>>
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implements IPartitionableConverter<StreamItem, IReader<CdmBase>, String> {
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@SuppressWarnings("unused")
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private static final Logger logger = LogManager.getLogger(EolAgent2CdmConverter.class);
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private static final String CORE_ID = "coreId";
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/**
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* @param state
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*/
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public EolAgent2CdmConverter(DwcaDataImportStateBase state) {
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super(state);
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}
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@Override
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public IReader<MappedCdmBase<? extends CdmBase>> map(StreamItem item ){
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List<MappedCdmBase<? extends CdmBase>> resultList = new ArrayList<>();
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Map<String, String> csv = item.map;
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Reference sourceReference = state.getTransactionalSourceReference();
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String sourceReferecenDetail = null;
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//TODO is taxon needed here here?
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// String id = csv.get(CORE_ID);
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// Taxon taxon = getTaxonBase(id, item, Taxon.class, state);
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String id = item.get(TermUri.DC_IDENTIFIER);
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String givenName = item.get(TermUri.FOAF_FIRST_NAME);
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String familyName = item.get(TermUri.FOAF_FAMILY_NAME);
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String name = item.get(TermUri.FOAF_NAME);
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String organization = item.get(TermUri.EOL_ORGANIZATION);
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String accountName = item.get(TermUri.FOAF_ACCOUNT_NAME);
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Institution institution = null;
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User user = null;
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if (isNotBlank(organization)){
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institution = Institution.NewInstance();
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institution.setName(organization);
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MappedCdmBase<Institution> mcb = new MappedCdmBase<Institution>(TermUri.EOL_ORGANIZATION, id, institution);
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resultList.add(mcb);
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}
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if (isNotBlank(accountName)){
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user = User.NewInstance(accountName, UUID.randomUUID().toString()); //TODO
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MappedCdmBase<User> mcb = new MappedCdmBase<User>(TermUri.FOAF_ACCOUNT_NAME, id, user);
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resultList.add(mcb);
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}
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if (isPerson(item)){
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Person person = Person.NewInstance();
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person.setGivenName(givenName);
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person.setFamilyName(familyName);
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if (isNotBlank(name) && ! name.equalsIgnoreCase(person.getTitleCache())){
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//TODO FOAF_NAME allows multiple names per object
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person.setTitleCache(name, true);
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}
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if (institution != null){
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person.addInstitutionalMembership(institution, null, null, null);
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}
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if (isNotBlank(accountName)){
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}
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MappedCdmBase<Person> mcb = new MappedCdmBase<>(item.term, id, person);
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resultList.add(mcb);
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}else{
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//still unclear, what does Agent all include? Teams, organizations, ...?
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String message = "Agent type unclear. Agent not handled.";
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fireWarningEvent(message, item, 8);
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}
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// resultList.add(mcb);
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//return
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return new ListReader<>(resultList);
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}
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private boolean isPerson(StreamItem item) {
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String givenName = item.get(TermUri.FOAF_FIRST_NAME);
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String familyName = item.get(TermUri.FOAF_FAMILY_NAME);
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String accountName = item.get(TermUri.FOAF_ACCOUNT_NAME);
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if (isNotBlank(givenName) || isNotBlank(familyName) || isNotBlank(accountName) ){
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return true;
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}else{
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return false;
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}
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}
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@Override
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public String getSourceId(StreamItem item) {
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String id = item.get(CORE_ID);
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return id;
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}
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//**************************** PARTITIONABLE ************************************************
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@Override
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protected void makeForeignKeysForItem(StreamItem item, Map<String, Set<String>> fkMap) {
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String value;
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String key;
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if ( hasValue(value = item.get(CORE_ID))){
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key = TermUri.DWC_TAXON.toString();
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Set<String> keySet = getKeySet(key, fkMap);
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keySet.add(value);
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}
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}
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@Override
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public final Set<String> requiredSourceNamespaces() {
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Set<String> result = new HashSet<>();
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result.add(TermUri.DWC_TAXON.toString());
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return result;
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}
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//************************ STRING ************************************************/
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@Override
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public String toString(){
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return this.getClass().getName();
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}
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}
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