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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.common.mapping;
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import java.io.Serializable;
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import java.util.UUID;
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import org.apache.commons.lang3.StringUtils;
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import org.apache.logging.log4j.LogManager;import org.apache.logging.log4j.Logger;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.io.common.DbImportStateBase;
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import eu.etaxonomy.cdm.model.common.ExtensionType;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.MarkerType;
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import eu.etaxonomy.cdm.model.common.RelationshipTermBase;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
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import eu.etaxonomy.cdm.model.description.State;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.location.NamedAreaLevel;
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import eu.etaxonomy.cdm.model.location.ReferenceSystem;
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import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.term.DefinedTerm;
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/**
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* @author a.mueller
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* @since 15.03.2010
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*/
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public class InputTransformerBase implements IInputTransformer, Serializable {
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private static final long serialVersionUID = 1824180329524647957L;
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@SuppressWarnings("unused")
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private static final Logger logger = LogManager.getLogger(InputTransformerBase.class);
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@Override
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public Feature getFeatureByKey(String key) throws UndefinedTransformerMethodException {
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String warning = "getFeatureByKey is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public UUID getFeatureUuid(String key) throws UndefinedTransformerMethodException {
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String warning = "getFeatureUuid is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public State getStateByKey(String key) throws UndefinedTransformerMethodException {
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String warning = "getStateByKey is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public UUID getStateUuid(String key) throws UndefinedTransformerMethodException {
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String warning = "getStateByKey is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public Language getLanguageByKey(String key) throws UndefinedTransformerMethodException {
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String warning = "getLanguageByKey is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public UUID getLanguageUuid(String key) throws UndefinedTransformerMethodException {
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String warning = "getLanguageByUuid is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public ExtensionType getExtensionTypeByKey(String key) throws UndefinedTransformerMethodException {
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String warning = "getExtensionTypeByKey is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public UUID getExtensionTypeUuid(String key) throws UndefinedTransformerMethodException {
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String warning = "getExtensionTypeUuid is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public MarkerType getMarkerTypeByKey(String key) throws UndefinedTransformerMethodException {
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String warning = "getMarkerTypeByKey is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public UUID getMarkerTypeUuid(String key) throws UndefinedTransformerMethodException {
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String warning = "getMarkerTypeUuid is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public NameTypeDesignationStatus getNameTypeDesignationStatusByKey(String key) throws UndefinedTransformerMethodException {
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String warning = "getNameTypeDesignationStatusByKey is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public UUID getNameTypeDesignationStatusUuid(String key) throws UndefinedTransformerMethodException {
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String warning = "getNameTypeDesignationStatusUuid is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public SpecimenTypeDesignationStatus getSpecimenTypeDesignationStatusByKey(String key) throws UndefinedTransformerMethodException {
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if (isBlank(key)){return null;
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}else if (key.matches("(?i)(T|Type)")){return SpecimenTypeDesignationStatus.TYPE();
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}else if (key.matches("(?i)(HT|Holotype)")){return SpecimenTypeDesignationStatus.HOLOTYPE();
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}else if (key.matches("(?i)(LT|Lectotype)")){return SpecimenTypeDesignationStatus.LECTOTYPE();
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}else if (key.matches("(?i)(NT|Neotype)")){return SpecimenTypeDesignationStatus.NEOTYPE();
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}else if (key.matches("(?i)(ST|Syntype)")){return SpecimenTypeDesignationStatus.SYNTYPE();
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}else if (key.matches("(?i)(ET|Epitype)")){return SpecimenTypeDesignationStatus.EPITYPE();
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}else if (key.matches("(?i)(IT|Isotype)")){return SpecimenTypeDesignationStatus.ISOTYPE();
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}else if (key.matches("(?i)(ILT|Isolectotype)")){return SpecimenTypeDesignationStatus.ISOLECTOTYPE();
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}else if (key.matches("(?i)(INT|Isoneotype)")){return SpecimenTypeDesignationStatus.ISONEOTYPE();
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}else if (key.matches("(?i)(IET|Isoepitype)")){return SpecimenTypeDesignationStatus.ISOEPITYPE();
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}else if (key.matches("(?i)(PT|Paratype)")){return SpecimenTypeDesignationStatus.PARATYPE();
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}else if (key.matches("(?i)(PLT|Paralectotype)")){return SpecimenTypeDesignationStatus.PARALECTOTYPE();
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}else if (key.matches("(?i)(PNT|Paraneotype)")){return SpecimenTypeDesignationStatus.PARANEOTYPE();
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}else if (key.matches("(?i)(unsp.|Unspecified)")){return SpecimenTypeDesignationStatus.UNSPECIFIC();
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}else if (key.matches("(?i)(2LT|Second Step Lectotype)")){return SpecimenTypeDesignationStatus.SECOND_STEP_LECTOTYPE();
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}else if (key.matches("(?i)(2NT|Second Step Neotype)")){return SpecimenTypeDesignationStatus.SECOND_STEP_NEOTYPE();
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}else if (key.matches("(?i)(OM|Original Material)")){return SpecimenTypeDesignationStatus.ORIGINAL_MATERIAL();
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}else if (key.matches("(?i)(IcT|Iconotype)")){return SpecimenTypeDesignationStatus.ICONOTYPE();
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}else if (key.matches("(?i)(PT|Phototype)")){return SpecimenTypeDesignationStatus.PHOTOTYPE();
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}else if (key.matches("(?i)(IST|Isosyntype)")){return SpecimenTypeDesignationStatus.ISOSYNTYPE();
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}else{
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return null;
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}
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}
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@Override
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public UUID getSpecimenTypeDesignationStatusUuid(String key) throws UndefinedTransformerMethodException {
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String warning = "getSpecimenTypeDesignationStatusUuid is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public PresenceAbsenceTerm getPresenceTermByKey(String key) throws UndefinedTransformerMethodException {
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String warning = "getPresenceTermByKey is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public UUID getPresenceTermUuid(String key) throws UndefinedTransformerMethodException {
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String warning = "getPresenceTermUuid is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public NamedArea getNamedAreaByKey(String key) throws UndefinedTransformerMethodException {
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String warning = "getNamedAreaByKey is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public UUID getNamedAreaUuid(String key) throws UndefinedTransformerMethodException {
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String warning = "getNamedAreaUuid is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public NamedAreaLevel getNamedAreaLevelByKey(String key) throws UndefinedTransformerMethodException {
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String warning = "getNamedAreaLevelByKey is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public UUID getNamedAreaLevelUuid(String key) throws UndefinedTransformerMethodException {
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String warning = "getNamedAreaLevelUuid is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public ReferenceSystem getReferenceSystemByKey(String key) throws UndefinedTransformerMethodException {
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if (CdmUtils.isBlank(key)){return null;
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}else if (key.matches("(?i)(wgs84)")){return ReferenceSystem.WGS84();
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}else if (key.matches("(?i)(googleearth)")){return ReferenceSystem.GOOGLE_EARTH();
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}else if (key.matches("(?i)(gazetteer)")){return ReferenceSystem.GAZETTEER();
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}else if (key.matches("(?i)(map)")){return ReferenceSystem.MAP();
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}else{
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String warning = "getReferenceSystemByKey is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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}
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@Override
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public UUID getReferenceSystemUuid(String key) throws UndefinedTransformerMethodException {
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String warning = "getReferenceSystemUuid is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public Rank getRankByKey(String key) throws UndefinedTransformerMethodException {
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String warning = "getRankByKey is not yet implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public NomenclaturalStatusType getNomenclaturalStatusByKey(String key) throws UndefinedTransformerMethodException {
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String warning = "getNomenclaturalStatusByKey is not yet implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public UUID getRankUuid(String key) throws UndefinedTransformerMethodException {
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String warning = "getRankUuid is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public DefinedTerm getIdentifierTypeByKey(String key) throws UndefinedTransformerMethodException {
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String warning = "getIdentifierTypeByKey is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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@Override
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public UUID getIdentifierTypeUuid(String key) throws UndefinedTransformerMethodException {
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String warning = "getIdentifierTypeUuid is not implemented in implementing transformer class";
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throw new UndefinedTransformerMethodException(warning);
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}
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protected boolean isBlank(String str){
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return StringUtils.isBlank(str);
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}
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protected boolean isNotBlank(String str){
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return StringUtils.isNotBlank(str);
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}
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@Override
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public RelationshipTermBase<?>[] getSynonymRelationTypesByKey(String key, DbImportStateBase<?,?> state) {
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String warning = "getSynonymRelationTypesByKey is not implemented in implementing transformer class";
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logger.warn(warning);
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return null;
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}
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}
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