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/**
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* Copyright (C) 2013 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.ext.occurrence.bioCase;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertTrue;
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import static org.junit.Assert.fail;
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import java.io.BufferedReader;
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import java.io.IOException;
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import java.io.InputStream;
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import java.io.InputStreamReader;
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import java.util.HashSet;
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import java.util.Set;
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import org.apache.http.client.ClientProtocolException;
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import org.apache.logging.log4j.LogManager;
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import org.apache.logging.log4j.Logger;
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import org.junit.Test;
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import eu.etaxonomy.cdm.common.URI;
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import eu.etaxonomy.cdm.common.UriUtils;
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import eu.etaxonomy.cdm.ext.occurrence.OccurenceQuery;
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/**
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* @author pplitzner
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* @since 16.09.2013
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*/
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public class BioCaseQueryServiceWrapperTest {
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public static final Logger logger = LogManager.getLogger(BioCaseQueryServiceWrapperTest.class);
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private static final int MAX_LINES_TO_READ = 1000;
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private static final int TIMEOUT = 60000;
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@Test(timeout=TIMEOUT)
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public void testQuery() {
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if(UriUtils.isInternetAvailable(null)){
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BioCaseQueryServiceWrapper queryService = new BioCaseQueryServiceWrapper();
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try {
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OccurenceQuery query = new OccurenceQuery("Campanula patula*", null, null, null, null, null, null, null, null, false);
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InputStream response = queryService.query(query, URI.create("http://ww3.bgbm.org/biocase/pywrapper.cgi?dsa=Herbar"));
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if(response==null){
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logger.error("SKIPPING TEST: No response from BioCase provider");
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return;
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}
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BufferedReader reader = new BufferedReader(new InputStreamReader(response));
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String line = null;
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int count = 0;
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boolean isCorrectFormat = false;
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do {
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if(count>MAX_LINES_TO_READ){
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fail("Service response did not include parameter to test.");
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break;
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}
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if(line!=null){
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if(logger.isTraceEnabled()){
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System.out.println(line);
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}
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//just check for recordCount attribute to see if a valid response was returned
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String recordAttr = "recordCount=\"";
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int index = line.indexOf(recordAttr);
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if(index>-1){
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isCorrectFormat = true;
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break;
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}
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}
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line = reader.readLine();
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count++;
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} while (line!=null);
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assertTrue("BioCase response did not have the expected format", isCorrectFormat);
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} catch (NumberFormatException e) {
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fail(e.getMessage());
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} catch (ClientProtocolException e) {
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fail(e.getMessage());
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} catch (IOException e) {
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fail(e.getMessage());
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}
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} else {
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logger.error("SKIPPING TEST: no internet connectivity available");
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return;
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}
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}
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@Test//(timeout=TIMEOUT)
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public void testQueryForUnitId(){
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if(UriUtils.isInternetAvailable(null)){
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BioCaseQueryServiceWrapper service = new BioCaseQueryServiceWrapper();
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try {
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Set<String[]> unitIds = new HashSet<>();
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String[] unitIdArray ={"B 10 0463639"};
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unitIds.add(unitIdArray);
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InputStream queryForSingleUnit = service.query(new OccurenceQuery(unitIds), URI.create("https://ww3.bgbm.org/biocase/pywrapper.cgi?dsa=Herbar"));
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if(queryForSingleUnit==null){
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logger.error("SKIPPING TEST: No response from BioCase provider");
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return;
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}
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BufferedReader reader = new BufferedReader(new InputStreamReader(queryForSingleUnit));
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String line = null;
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int count = 0;
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do {
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if(count>MAX_LINES_TO_READ){
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fail("Service response did not include parameter to test.");
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break;
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}
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if(line!=null){
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if(logger.isTraceEnabled()){
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System.out.println(line);
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}
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String recordAttr = "recordCount=\"";
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int index = line.indexOf(recordAttr);
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if(index>-1){
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String recordCount = line.substring(index+recordAttr.length(), index+recordAttr.length()+1);
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assertEquals("Incorrect number of occurrences", 1, Integer.parseInt(recordCount.trim()));
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}
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String unitId = "<abcd:UnitID>";
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int indexId = line.indexOf(unitId);
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if(indexId>-1){
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@SuppressWarnings("unused")
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String id = line.substring(indexId+unitId.length(), indexId+unitId.length()+5);
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// assertEquals("Incorrect UnitId", 29596, Integer.parseInt(id));
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// break;
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}
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}
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line = reader.readLine();
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count++;
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} while (line!=null);
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unitIds = new HashSet<>();
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String[] unitIdsArray = {"B -W 16385 -01 0"};
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unitIds.add(unitIdsArray);
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String[] unitIdsArray2 ={"B 10 0641985"};
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unitIds.add(unitIdsArray2);
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queryForSingleUnit = service.query(new OccurenceQuery(unitIds), URI.create("http://ww3.bgbm.org/biocase/pywrapper.cgi?dsa=Herbar"));
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if(queryForSingleUnit==null){
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logger.error("SKIPPING TEST: No response from BioCase provider");
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return;
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}
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reader = new BufferedReader(new InputStreamReader(queryForSingleUnit));
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line = null;
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count = 0;
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do {
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if(count>MAX_LINES_TO_READ){
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fail("Service response did not include parameter to test.");
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break;
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}
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if(line!=null){
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if(logger.isTraceEnabled()){
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System.out.println(line);
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}
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String recordAttr = "recordCount=\"";
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int index = line.indexOf(recordAttr);
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if(index>-1){
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String recordCount = line.substring(index+recordAttr.length(), index+recordAttr.length()+1);
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assertEquals("Incorrect number of occurrences", 2, Integer.parseInt(recordCount));
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}
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}
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line = reader.readLine();
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count++;
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} while (line!=null);
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} catch (NumberFormatException | IOException e) {
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fail(e.getMessage());
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}
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} else {
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logger.error("SKIPPING TEST: no internet connectivity available");
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return;
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}
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}
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}
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