EDIT

import java.io.Serializable;

import java.util.UUID;

import eu.etaxonomy.cdm.model.common.ICdmBase;

/**

	private static final long serialVersionUID = 3446993458279371682L;

	private Class<? extends T> type;

	final private UUID uuid;

	private Integer id;

import java.util.List;

import java.util.Map;

import org.springframework.util.ReflectionUtils;

import eu.etaxonomy.cdm.api.service.pager.Pager;

 */

public class CacheLoader {

    private static boolean isRecursiveEnabled = true;

import java.util.Iterator;

import java.util.Map;

import org.hibernate.SessionFactory;

import org.hibernate.boot.Metadata;

import org.hibernate.boot.MetadataSources;

 */

public class CdmModelCacher {

    public static String HB_CONFIG_FILE_PATH= "/eu/etaxonomy/cdm/mappings/hibernate.cfg.xml";

import java.io.IOException;

import java.net.URISyntaxException;

import net.sf.ehcache.Cache;

import net.sf.ehcache.CacheException;

public class CdmRemoteCacheManager {

    @SuppressWarnings("unused")

    private Cache cdmlibModelCache;

import javax.management.MBeanServer;

import eu.etaxonomy.cdm.api.cache.CdmCacherBase;

import eu.etaxonomy.cdm.model.ICdmCacher;

 */

public class CdmTransientEntityCacher implements ICdmCacher {

    //the key for this cacher within the CacheManager

    private final String cacheId;

import java.util.List;

import java.util.Map;

import org.hibernate.LazyInitializationException;

import org.hibernate.collection.spi.PersistentCollection;

import org.hibernate.proxy.HibernateProxy;

 */

public class EntityCacherDebugResult {

    private Map<CdmEntityInfo, CdmEntityInfo> duplicateCdmEntityMap;

  <dependencies>

    <dependency>

    </dependency>

    <dependency>

      <groupId>org.springframework</groupId>

import java.util.regex.Pattern;

import org.apache.commons.lang3.StringUtils;

/**

 * @author a.mueller

 */

public class CdmUtils {

    static private boolean urlIsJarOrBundle(URL url){

        return url.getProtocol().startsWith("jar") || url.getProtocol().startsWith("bundleresource");

*/

package eu.etaxonomy.cdm.common;

/**

 * An instance of this class represents an method result that contains 2 variables. The variables may be typified.

 * @since 30.10.2008

 */

public class DoubleResult<S extends Object, T extends Object> {

	private S firstResult = null;

	private T secondResult = null;

		if (logger.isDebugEnabled()){logger.debug("Constructor");}

	}

	public DoubleResult(S firstResult, T secondResult) {

		this.firstResult = firstResult;

		this.secondResult = secondResult;

import java.util.Iterator;

import java.util.List;

/**

 * DynamicBatch: a JVM resources aware batch manager.

 */

public class DynamicBatch {

    int batchSize;

    int batchItemCount = -1;

import java.util.Locale;

import java.util.Map;

import org.apache.poi.hssf.usermodel.HSSFDataFormatter;

import org.apache.poi.ss.usermodel.Cell;

import org.apache.poi.ss.usermodel.CellType;

 * @since 18.11.2008

 */

public class ExcelUtils {

    /** Reads all rows of an Excel worksheet */

    public static List<Map<String, String>> parseXLS(URI uri) throws FileNotFoundException {

/**

* Copyright (C) 2007 EDIT

* http://www.e-taxonomy.eu

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.common;

import java.io.File;

import java.io.InputStream;

import java.io.OutputStream;

/**

 * @author a.mueller

 * @since 20.11.2008

 */

public class FileCopy {

	// overwrite constants

	public static final int DO_OVERWRITE = 1;

	// default values

	private static int bufferSize = 4 * 1024;

	private static int overwrite = DO_OVERWRITE;

	/**

	 * @param sourceFile

	 * @param destinationDirectory

	 * @param destFileName

		}

		InputStream in = new FileInputStream(sourceFile);

		copy(in, destinationDirectory, destFileName);

		if (!destinationDirectory.isDirectory()) {

			logger.warn("Not a directory: " + destinationDirectory.getName());

			return false;

		File destinationFile = new File(destinationDirectory, destFileName);

		OutputStream out = new FileOutputStream(destinationFile);

		return copy(in, out);

	}

	public static boolean copy(InputStream in, File destinationDirectory, String destFileName)

			throws IOException {

		if (!destinationDirectory.isDirectory()) {

			throw new IOException("Destination is not a directory");

		}

		}

		File destinationFile = new File(destinationDirectory, destFileName);

		OutputStream out = new FileOutputStream(destinationFile);

		return copy(in, out);

	public static boolean copy(InputStream in, OutputStream out)

			throws IOException {

		byte[] buffer = new byte[bufferSize];

		return true;

	}

	public static boolean copy(String source, String destDirectory, String destFileName)

			throws IOException {

		File sourceFile = new File(source);

		File destinationDir = new File(destDirectory);

		return copy(sourceFile, destinationDir, destFileName);

	}

	public static boolean copy(String source, String destDirectory)

			throws IOException {

		return copy(source, destDirectory, null);

	}

	/**

	 * @param file File destination

	 * @return true if data can be copied, false otherwise

	 */

			return false;

		}

	}

/**

package eu.etaxonomy.cdm.common;

import java.util.regex.Pattern;

/**

 * @author a.mueller

 * @since 2013-Aug-02

 */

public class GeneralParser {

	static String isbnPatternStr = "^(ISBN\\s*)?(\\d-?){9}((\\d-?){3})?(\\d|X)$";

	static Pattern isbnPattern;

import java.lang.management.MemoryUsage;

import java.util.List;

/**

 * @author a.kohlbecker

 */

public class JvmMonitor {

    private long gcTimeLast = 0;

/**

* Copyright (C) 2007 EDIT

* http://www.e-taxonomy.eu

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.common;

/**

 * Wrapps a result object so it can be used as method parameter and changed within the method.

 * 	__}<br>

 * 	}

 * </code>

 * by the calling method

 * @author a.mueller

 * @since 01.11.2008

 */

public class ResultWrapper<T> {

	public static final ResultWrapper<Boolean> NewInstance(Boolean value){

		ResultWrapper<Boolean> result = new ResultWrapper<Boolean>();

		if (logger.isDebugEnabled()){logger.debug("New Instance");}

		return result;

	}

	public T getValue() {

		return object;

	}

	public void setValue(T value) {

		this.object = value;

	}

import java.net.HttpURLConnection;

import java.net.URL;

/**

 * @author a.kohlbecker

 */

public class StreamUtils {

	private static final int BUFFER_SIZE = 4096;

	/**

import org.apache.http.impl.client.CloseableHttpClient;

import org.apache.http.impl.client.DefaultHttpClient;

import org.apache.http.impl.client.HttpClients;

/**

 * @author n.hoffmann

 * @since Sep 23, 2010

 */

public class UriUtils {

    protected static final String URI_IS_NOT_ABSOLUTE = "URI is not absolute (protocol is missing)";

/**

* Copyright (C) 2007 EDIT

* http://www.e-taxonomy.eu

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

import java.util.ArrayList;

import java.util.List;

import org.jdom.Attribute;

import org.jdom.Document;

import org.jdom.Element;

import org.jdom.output.XMLOutputter;

public class XmlHelp {

	/**

	 * Writes the Document doc to the specified file

	 * @param doc

	 * @param path

	 * @param fileName

	 * @return true, if no error

	 * something about the problem

	 */

	static public boolean saveToXml(Document doc, String path, String fileName, Format format ){

			if (! fileName.endsWith(".xml")){

				fileName += ".xml";

			}

			return saveToXml(doc, outFile, format);

		} catch (FileNotFoundException e) {

			logger.error("FileNotFoundException in saveToXml()");

			return false;

		}

	}

	/**

	 * Writes the Document doc to the specified file

	 * @param doc

	 * @param path

	 * @param fileName

	 * @return true, if no error

	 * something about the problem

	 */

	static public boolean saveToXml(Document doc, OutputStream outStream, Format format ){

		} catch (IOException e) {

			logger.error("IOException in saveToXml()");

			return false;

	}

	static public Element getFirstAttributedChild(Element parent, String elementName, String attributeName, String attributeValue){

		Namespace ns = parent.getNamespace();

		List<Element> elList = getChildren(parent, elementName, ns);

		for (Element el : elList){

			Attribute attr =  el.getAttribute(attributeName);

		}

		return null;

	}

	static public List<Element> getAttributedChildList(Element parent, String elementName, String attributeName){

		List<Element> resultList = new ArrayList<Element>();

		Namespace ns = parent.getNamespace();

		}

		return resultList;

	}

	/**

	 * a given value for this attribute.<BR>

	 * The value comparison is case insensitive.

	 * @param parent

	private static List<Element> getChildren(Element parent, String elementName,Namespace ns) {

		return parent.getChildren(elementName, ns);

	}

	public static String getChildAttributeValue(Element element, String childElementName, Namespace childElementNamespace, String childAttributeName, Namespace childAttributeNamespace){

		Element child = element.getChild(childElementName, childElementNamespace);

		if (child == null){

		}

		return childAttribute.getValue();

	}

	public static String getChildContent(Element element, String childElementName, Namespace childElementNamespace, String childAttributeName, Namespace childAttributeNamespace){

		Element child = element.getChild(childElementName, childElementNamespace);

		if (child == null){

	 */

	static public Element getOrAddChild(Element parent, String elementName, String attributeName, String attributeValue){

		Element result = null;

			if (attributeName != null){

				result = getFirstAttributedChild(parent, elementName, attributeName, attributeValue);

			}else{

		}

		return result;

	}

	static public Element insertXmlRefProperty(Element parent, String strName, String strValue){

		Namespace ns = parent.getNamespace();

		Element property = new Element("property", ns);

		parent.addContent(property);

		return  property;

	}

	static public Element insertXmlValueProperty(Element parent, String strName, String strValue){

		Namespace ns = parent.getNamespace();

		Element property = new Element("property", ns);

		parent.addContent(property);

		return  property;

	}

	static public Element insertXmlBean(Element parent, String strId, String strClass){

		Namespace ns = parent.getNamespace();

		Element bean = new Element("bean", ns);

		parent.addContent(bean);

		return  bean;

	}

	/**

	 * returns the root Element in the File xmlFile

		Element root = doc.getRootElement();

		return root;

	}

	/**

	 * returns the root Element in the File xmlFile

	 * @param xmlInput

	 * @param elementName

	 * @return

	 * something about the problem

	 */

	static public  Element getRoot(InputStream xmlInput, String elementName){

		} catch (IOException e) {

			e.printStackTrace();

			return null;

	}

	/**

	 * returns the root Element in the File xmlFile

	 * @param xmlInput

	 * @return

	 * something about the problem

	 */

	static public  Element getBeansRoot(InputStream xmlInput){

		} catch (IOException e) {

			e.printStackTrace();

			return null;

	}

	/**

	 * Gets the child element and tests if there is no other child element exists having the same name.

	 * elements cardinality was correct. <BR>

	 * or if there is no such element and obligatory is <code>true</code> the second part of the result is <code>false</code>

	 * Otherwise it is <code>true</code>.

	 * @param parentElement the parent element

	static public DoubleResult<Element, Boolean> getSingleChildElement(Element parentElement, String childName, Namespace nsChild, boolean obligatory){

		DoubleResult<Element, Boolean> result = new DoubleResult<Element, Boolean>();

		result.setSecondResult(false);

		if (parentElement == null){

			logger.warn("Parent element is null");

			return result;

		List<Element> elList = getChildren(parentElement, childName, nsChild);

		if (elList.size() > 1){

			logger.error("Multiple '" + childName + "' elements.");

		}else if (elList.size() == 0){

			logger.info("There is no '" + childName + "' element");

			if (! obligatory){

			}

			return result;

		}

		result.setFirstResult(childElement);

		result.setSecondResult(true);

		return result;

	}

	static public Element getSingleChildElement(ResultWrapper<Boolean> success, Element parentElement, String childName, Namespace nsChild, boolean obligatory){

		if (parentElement == null){

			logger.warn("Parent element is null");

			success.setValue(false);

		if (elList.size() > 1){

			logger.error("Multiple '" + childName + "' elements.");

			success.setValue(false);

		}else if (elList.size() == 0){

			elList = getChildren(parentElement, childName, null);

			logger.info("There is no '" + childName + "' element");

			}

			return null;

		}

		return childElement;

	static public List<Element> getMultipleChildElement(Element parentElement, String childName, Namespace nsChild, boolean obligatory){

		if (parentElement == null){

			logger.warn("Parent element is null");

			return null;

		}

		List<Element> elList = getChildren(parentElement, childName.trim(), nsChild);

		if (elList.size() == 0){

			logger.info("There is no '" + childName + "' element");

			return null;

				}

				if (!(contentEl.getAttributeValue(childElementName) == null)){

					Attribute at = contentEl.getAttribute("ressource");

				}

			}

		}

		return null;

}

import java.util.LinkedList;

import java.util.List;

/**

 * Concurrent queue. Example taken from

 */

public class ConcurrentQueue<T> {

    private int capacity;

    private List<T> queue = new LinkedList<>();

 */

package eu.etaxonomy.cdm.common.media;

/**

 * @author n.hoffmann

 */

public abstract class MediaInfo {

	@SuppressWarnings("unused")

	private String formatName;

	private String mimeType;

import java.io.Serializable;

import java.math.BigDecimal;

/**

 * This is a console style progress monitor with prints the progress information to configured {@link Logger} with level {@link Level#INFO}

public class DefaultProgressMonitor implements IProgressMonitor {

    private static final long serialVersionUID = 8782649283568146667L;

    public static final DefaultProgressMonitor NewInstance(){

        return new DefaultProgressMonitor();

import java.io.Serializable;

import java.util.concurrent.ConcurrentHashMap;

/**

 * Thread class to be used to run monitored jobs

 */

public abstract class RemotingProgressMonitorThread extends Thread {

    private static ConcurrentHashMap<IRemotingProgressMonitor, RemotingProgressMonitorThread>

        monitorsInProgress = new ConcurrentHashMap<>();

import java.io.InputStream;

import java.util.regex.Pattern;

import org.junit.Assert;

import org.junit.Test;

 */

public class CdmUtilsTest {

/************************** TESTS ****************************************/

	@Test

	public void testFindLibrary() {

		String library = CdmUtils.findLibrary(CdmUtils.class);

		String endOfLibrary = "target/classes/eu/etaxonomy/cdm/common/CdmUtils.class";

*/

package eu.etaxonomy.cdm.common;

import org.junit.Assert;

import org.junit.Test;

public class JvmMonitorTest extends Assert{

    @Test

    public void testGcTime() {

import org.apache.http.NameValuePair;

import org.apache.http.client.ClientProtocolException;

import org.apache.http.message.BasicNameValuePair;

import org.junit.Assert;

import org.junit.Test;

public class UriUtilsTest {

//********************* TESTS **********************************************/

import java.util.UUID;

/**

 * @author a.mueller

 */

public class UuidGenerator {

	private static int n = 100;

/**

 * Copyright (C) 2007 EDIT

 * http://www.e-taxonomy.eu

 * The contents of this file are subject to the Mozilla Public License Version 1.1

 * See LICENSE.TXT at the top of this package for the full license terms.

 */

package eu.etaxonomy.cdm.common;

import org.junit.After;

import org.junit.AfterClass;

import org.junit.Before;

import org.junit.Test;

public class XmlHelpTest {

	@BeforeClass

	public static void setUpBeforeClass() throws Exception {

	@After

	public void tearDown() throws Exception {

	}

/******* TESTS *************************************/

	@Test

 * The contents of this file are subject to the Mozilla Public License Version 1.1

 * See LICENSE.TXT at the top of this package for the full license terms.

 */

package eu.etaxonomy.cdm.test.suite;

import org.junit.runner.RunWith;

import org.junit.runners.Suite;

		}

	)

public class CdmTestSuite {

	// the class remains completely empty,

	// being used only as a holder for the above annotations

import org.apache.commons.lang.StringUtils;

import org.apache.http.NameValuePair;

import org.apache.http.message.BasicNameValuePair;

import org.springframework.stereotype.Component;

import com.ibm.lsid.MalformedLSIDException;

        extends ServiceWrapperBase<Collection>

        implements IBciServiceWrapper{

	 private enum ServiceType{

		 AUTHOR,

import java.io.InputStream;

import java.util.List;

import eu.etaxonomy.cdm.common.URI;

import eu.etaxonomy.cdm.model.common.CdmBase;

 */

public abstract class SchemaAdapterBase<T extends CdmBase> {

	/**

	 * @return the identifier e.g. "info:srw/schema/1/dc-v1.1" for DublinCore

import org.apache.http.NameValuePair;

import org.apache.http.client.ClientProtocolException;

import org.apache.http.message.BasicNameValuePair;

import eu.etaxonomy.cdm.common.URI;

import eu.etaxonomy.cdm.common.UriUtils;

 */

public class ServiceWrapperBase<T extends CdmBase> {

	private URL baseUrl;

import javax.persistence.EntityNotFoundException;

import org.springframework.beans.factory.annotation.Autowired;

import org.springframework.stereotype.Service;

import org.springframework.transaction.annotation.Transactional;

public class EditGeoService implements IEditGeoService {

    @SuppressWarnings("unused")

    @Autowired

    private IDescriptionDao dao;

import org.apache.commons.collections.CollectionUtils;

import org.apache.commons.lang.StringUtils;

import com.fasterxml.jackson.core.JsonParseException;

import com.fasterxml.jackson.databind.JsonMappingException;

 * @since 17.11.2008

 */

public class EditGeoServiceUtilities {

    private static final int INT_MAX_LENGTH = String.valueOf(Integer.MAX_VALUE).length();

import javax.xml.stream.XMLStreamException;

import javax.xml.stream.XMLStreamWriter;

import org.jdom.Element;

import org.jdom.JDOMException;

import org.jdom.Namespace;

 */

public class GeoServiceArea {

    @SuppressWarnings("unused")

    private static final String VALUE = "value";

    private static final String FIELD = "field";

import javax.xml.stream.XMLStreamException;

import org.springframework.beans.factory.annotation.Autowired;

import org.springframework.stereotype.Component;

@Component

public class GeoServiceAreaAnnotatedMapping implements IGeoServiceAreaMapping {

    @SuppressWarnings("unused")

    @Autowired

    private ITermService termService;

import java.util.Set;

import org.apache.commons.lang.ArrayUtils;

import au.com.bytecode.opencsv.CSVReader;

import eu.etaxonomy.cdm.model.location.NamedArea;

 */

public class ShpAttributesToNamedAreaMapper {

    private static final char COMMA = ',';

import javax.measure.UnitConverter;

import javax.measure.quantity.Length;

import org.geotools.data.DataUtilities;

import org.geotools.feature.SchemaException;

import org.geotools.feature.simple.SimpleFeatureBuilder;

/**

 * See :

 * https://gis.stackexchange.com/questions/311272/create-dynamic-circle-polygon-from-specific-lat-long-using-geotools

 * https://gis.stackexchange.com/questions/283183/using-geometricshapefactory-to-create-circle-with-radius-in-miles

 * https://stackoverflow.com/questions/36481651/how-do-i-create-a-circle-with-latitude-longitude-and-radius-with-geotools#36528805

 * Another great library for creating shapes is https://github.com/locationtech/spatial4j

 * @author Andreas Kohlbecker

 * @since Apr 21, 2020

 */

public class GeometryBuilder {

	public enum CircleMethod {

		circle, simpleCircleSmall, simpleCircle, reprojectedCircle;

	/**

	 * Fails with javax.measure.IncommensurableException: m is not compatible with

	 * deg

	 * see

	 * https://gis.stackexchange.com/questions/283183/using-geometricshapefactory-to-create-circle-with-radius-in-miles

	 * @param radius

	 * @param latitude

	 * @param longitude

	/**

	 * Only suitable for small radius (> 1000 m) as the circles are heavily

	 * distorted otherwise.

	 * @param radius

	 * @param latitude

	 * @param longitude

	/**

	 * Creates perfect circles which are looking good but might be projected

	 * incorrectly for the resulting map

	 * @param distance

	 * @param latitude

	 * @param longitude

	/**

	 * This Method should produces the best circles.

	 * The code is based on an example published by Ian Turton on stackoverflow:

	 * https://stackoverflow.com/questions/36481651/how-do-i-create-a-circle-with-latitude-longitude-and-radius-with-geotools#36528805

	 * see https://gist.github.com/ianturton/973563fe5004985ba35a6e2247f7d823 and

	 * https://gitlab.com/snippets/17558

	 * @param feature

	 * @param distance

	 * @return

import java.util.Set;

import org.apache.commons.lang3.StringUtils;

import org.geotools.feature.SchemaException;

import org.locationtech.jts.geom.Coordinate;

import org.opengis.feature.simple.SimpleFeature;

 */

public class KMLDocumentBuilder {

	private Set<SpecimenOrObservationBase> occSet = new HashSet<>();

import org.apache.commons.lang.StringUtils;

import org.apache.http.HttpResponse;

import org.springframework.stereotype.Component;

import eu.etaxonomy.cdm.api.application.ICdmRepository;

 */

@Component

public class IpniService  implements IIpniService{

    //TYPE

package eu.etaxonomy.cdm.ext.ipni;

public class IpniServiceAuthorConfigurator extends IpniServiceConfiguratorBase  implements IIpniServiceConfigurator {

}

 */

package eu.etaxonomy.cdm.ext.ipni;

/**

 * Configurator for IPNI name service import / mapping.

 * @author a.mueller

 */

public class IpniServiceNamesConfigurator extends IpniServiceConfiguratorBase implements IIpniServiceConfigurator {