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/**
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* Copyright (C) 2009 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.validation;
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import static org.junit.Assert.assertFalse;
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import static org.junit.Assert.assertTrue;
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import java.util.Set;
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import javax.validation.ConstraintViolation;
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import org.apache.log4j.Logger;
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import org.junit.Assert;
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import org.junit.Before;
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import org.junit.Test;
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import eu.etaxonomy.cdm.model.name.HybridRelationshipType;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.model.name.TaxonNameFactory;
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import eu.etaxonomy.cdm.model.term.DefaultTermInitializer;
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import eu.etaxonomy.cdm.validation.constraint.NameMustFollowCodeValidator;
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/**
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* Test class for {@link NameMustFollowCodeValidator}
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*
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* @author a.mueller
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* @since 11.03.2017
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*/
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public class NameMustFollowCodeTest extends ValidationTestBase {
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(NameMustFollowCodeTest.class);
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private TaxonName nonViralName;
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private TaxonName viralName;
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private TaxonName bacterialName;
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private TaxonName zoologicalName;
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private TaxonName cultivarName;
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@Before
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public void setUp() {
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DefaultTermInitializer vocabularyStore = new DefaultTermInitializer();
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vocabularyStore.initialize();
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nonViralName = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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viralName = TaxonNameFactory.NewViralInstance(Rank.SPECIES());
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zoologicalName = TaxonNameFactory.NewZoologicalInstance(Rank.SPECIES());
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bacterialName = TaxonNameFactory.NewBacterialInstance(Rank.SPECIES());
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cultivarName = TaxonNameFactory.NewCultivarInstance(Rank.SPECIES());
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}
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/****************** TESTS *****************************/
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@Test
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public void testValidEmptyNames() {
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Set<ConstraintViolation<TaxonName>> constraintViolations
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= validator.validate(cultivarName);
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assertTrue("There should be no constraint violations as this name has data set and therefore no unvalid attributes set", constraintViolations.isEmpty());
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constraintViolations = validator.validate(nonViralName);
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assertTrue("There should be no constraint violations as this name has data set and therefore no unvalid attributes set", constraintViolations.isEmpty());
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constraintViolations = validator.validate(viralName);
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assertTrue("There should be no constraint violations as this name has data set and therefore no unvalid attributes set", constraintViolations.isEmpty());
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constraintViolations = validator.validate(zoologicalName);
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assertTrue("There should be no constraint violations as this name has data set and therefore no unvalid attributes set", constraintViolations.isEmpty());
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constraintViolations = validator.validate(bacterialName);
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assertTrue("There should be no constraint violations as this name has data set and therefore no unvalid attributes set", constraintViolations.isEmpty());
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}
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@Test
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public void testMessage() {
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nonViralName.setAcronym("acronym");
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Set<ConstraintViolation<TaxonName>> constraintViolations = validator.validate(nonViralName);
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assertFalse("There should be a constraint violation as a nonViralName must not have an acronym", constraintViolations.isEmpty());
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String message = constraintViolations.iterator().next().getMessage();
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String expected = "Taxon name must only have attributes set that are available according to their code. E.g. 'acronym name' should only be available for viral names.";
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Assert.assertEquals(expected, message);
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}
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@Test
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public void testValidNonViralName() {
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nonViralName.setAcronym("acronym");
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Set<ConstraintViolation<TaxonName>> constraintViolations = validator.validate(nonViralName);
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assertFalse("There should be a constraint violation as a nonViralName must not have an acronym", constraintViolations.isEmpty());
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nonViralName = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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nonViralName.setBreed("Breed");
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constraintViolations = validator.validate(nonViralName);
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assertFalse("There should be a constraint violation as pure NonViralNames must not have a breed", constraintViolations.isEmpty());
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nonViralName = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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nonViralName.setOriginalPublicationYear(1987);
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constraintViolations = validator.validate(nonViralName);
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assertFalse("There should be a constraint violation as pure NonViralNames must not have an original publication year", constraintViolations.isEmpty());
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nonViralName = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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nonViralName.setPublicationYear(2001);
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constraintViolations = validator.validate(nonViralName);
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assertFalse("There should be a constraint violation as pure NonViralNames must not have a publication year", constraintViolations.isEmpty());
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nonViralName = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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nonViralName.setSubGenusAuthorship("SubGenusAuthor");
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constraintViolations = validator.validate(nonViralName);
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assertFalse("There should be a constraint violation as pure NonViralNames must not have a subgenus author", constraintViolations.isEmpty());
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nonViralName = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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nonViralName.setNameApprobation("Name approbation");
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constraintViolations = validator.validate(nonViralName);
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assertFalse("There should be a constraint violation as pure NonViralNames must not have a name approbation", constraintViolations.isEmpty());
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//Valid
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nonViralName = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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nonViralName.setMonomHybrid(true);
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constraintViolations = validator.validate(nonViralName);
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assertTrue("There should be no constraint violation as NonViralNames may have a hybrid flag set", constraintViolations.isEmpty());
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nonViralName = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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nonViralName.setGenusOrUninomial("Genus");
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constraintViolations = validator.validate(nonViralName);
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assertTrue("There should be no constraint violation as NonViralNames may have a genus name set", constraintViolations.isEmpty());
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nonViralName = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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nonViralName.setNameCache("NameCache");
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constraintViolations = validator.validate(nonViralName);
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assertTrue("There should be no constraint violation as NonViralNames may have the name cache set", constraintViolations.isEmpty());
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nonViralName = TaxonNameFactory.NewNonViralInstance(Rank.SPECIES());
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TaxonName childName = TaxonNameFactory.NewViralInstance(Rank.SPECIES());
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nonViralName.addHybridChild(childName, HybridRelationshipType.FIRST_PARENT(), null);
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constraintViolations = validator.validate(nonViralName);
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assertTrue("There should be no constraint violation as NonViralNames may have a hybrid child", constraintViolations.isEmpty());
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//TBC
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}
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@Test
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public void testValidViralName() {
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viralName.setAcronym("acronym");
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Set<ConstraintViolation<TaxonName>> constraintViolations = validator.validate(viralName);
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assertTrue("There should be no constraint violation as a viral name may have acronym set", constraintViolations.isEmpty());
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//Invalid
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viralName = TaxonNameFactory.NewViralInstance(Rank.SPECIES());
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viralName.setMonomHybrid(true);
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constraintViolations = validator.validate(viralName);
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assertFalse("There should be a constraint violation as a ViralName must not have a hybrid flag set", constraintViolations.isEmpty());
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viralName = TaxonNameFactory.NewViralInstance(Rank.SPECIES());
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viralName.setGenusOrUninomial("Genus");
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constraintViolations = validator.validate(viralName);
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assertFalse("There should be a constraint violation as a ViralName must not have the genus name set", constraintViolations.isEmpty());
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viralName = TaxonNameFactory.NewViralInstance(Rank.SPECIES());
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viralName.setNameCache("NameCache");
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constraintViolations = validator.validate(viralName);
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assertFalse("There should be a constraint violation as a ViralName must not have the nameCache set", constraintViolations.isEmpty());
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viralName = TaxonNameFactory.NewViralInstance(Rank.SPECIES());
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TaxonName childName = TaxonNameFactory.NewViralInstance(Rank.SPECIES());
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viralName.addHybridChild(childName, HybridRelationshipType.FIRST_PARENT(), null);
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constraintViolations = validator.validate(viralName);
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assertFalse("There should be a constraint violation as a ViralName must not have hybrid child", constraintViolations.isEmpty());
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//TBC
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}
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@Test
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public void testValidZoologicalName() {
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zoologicalName.setBreed("Breed");
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zoologicalName.setOriginalPublicationYear(1987);
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zoologicalName.setPublicationYear(2001);
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Set<ConstraintViolation<TaxonName>> constraintViolations = validator.validate(zoologicalName);
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assertTrue("There should be no constraint violation as a zoological name may have breed and years set", constraintViolations.isEmpty());
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}
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@Test
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public void testValidBacterialName() {
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bacterialName.setSubGenusAuthorship("Subgenus author");
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bacterialName.setNameApprobation("Name approbation");
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Set<ConstraintViolation<TaxonName>> constraintViolations = validator.validate(bacterialName);
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assertTrue("There should be no constraint violation as a bacterial name may have subgenus authorship or name approbation set", constraintViolations.isEmpty());
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}
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}
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