EDIT

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.model.term;

import java.net.URI;

import java.util.HashSet;

import java.util.List;

import java.util.Set;

import java.util.SortedSet;

import java.util.TreeSet;

import java.util.UUID;

import javax.persistence.Entity;

import javax.persistence.FetchType;

import javax.persistence.OneToMany;

import javax.xml.bind.annotation.XmlAccessType;

import javax.xml.bind.annotation.XmlAccessorType;

import javax.xml.bind.annotation.XmlElement;

import javax.xml.bind.annotation.XmlElementWrapper;

import javax.xml.bind.annotation.XmlIDREF;

import javax.xml.bind.annotation.XmlRootElement;

import javax.xml.bind.annotation.XmlSchemaType;

import javax.xml.bind.annotation.XmlType;

import org.apache.log4j.Logger;

import org.hibernate.annotations.Cascade;

import org.hibernate.annotations.CascadeType;

import org.hibernate.annotations.Type;

import org.hibernate.envers.Audited;

import org.hibernate.search.annotations.Analyze;

import org.hibernate.search.annotations.Field;

import org.hibernate.search.annotations.IndexedEmbedded;

import eu.etaxonomy.cdm.common.CdmUtils;

import eu.etaxonomy.cdm.model.common.ExternallyManaged;

import eu.etaxonomy.cdm.model.common.Language;

/**

 * A single enumeration must only contain DefinedTerm instances of one kind

 * (this means a subclass of DefinedTerm).

 * @author m.doering

 * @since 08-Nov-2007 13:06:23

 */

@XmlAccessorType(XmlAccessType.FIELD)

@XmlType(name = "TermVocabulary", propOrder = {

    "termSourceUri",

    "terms",

    "externallyManaged"

})

@XmlRootElement(name = "TermVocabulary")

@Entity

//@Indexed disabled to reduce clutter in indexes, since this type is not used by any search

//@Indexed(index = "eu.etaxonomy.cdm.model.term.TermVocabulary")

@Audited

public class TermVocabulary<T extends DefinedTermBase>

        extends TermCollection<T,TermNode> {

    private static final long serialVersionUID = 1925052321596648672L;

	private static final Logger logger = Logger.getLogger(TermVocabulary.class);

	//The vocabulary source (e.g. ontology) defining the terms to be loaded when a database

	//is created for the first time.

	// Software can go and grap these terms incl. labels and description.

	// UUID needed? Further vocs can be setup through our own ontology.

	@XmlElement(name = "TermSourceURI")

	@Type(type="uriUserType")

	@Field(analyze = Analyze.NO)

	private URI termSourceUri;

	@XmlElementWrapper(name = "Terms")

	@XmlElement(name = "Term")

    @XmlIDREF

    @XmlSchemaType(name = "IDREF")

    @OneToMany(mappedBy="vocabulary", fetch=FetchType.LAZY, targetEntity = DefinedTermBase.class)

	@Type(type="DefinedTermBase")

	@Cascade({CascadeType.SAVE_UPDATE, CascadeType.MERGE})

	@IndexedEmbedded(depth = 2)

	protected Set<T> terms = newTermSet();

    private ExternallyManaged externallyManaged;

// ********************************* FACTORY METHODS *****************************************/

	public static TermVocabulary NewInstance(TermType type){

		return new TermVocabulary(type);

	}

	public static <T extends DefinedTermBase<T>> TermVocabulary<T> NewInstance(TermType type, Class<T> clazz){

		return new TermVocabulary<T>(type);

	}

	/**

	 * @deprecated use {@link #NewInstance(TermType, Class, String, String, String, URI)} instead

	 */

	@Deprecated

	public static TermVocabulary NewInstance(TermType type, String description, String label, String abbrev, URI termSourceUri){

		return new TermVocabulary(type, description, label, abbrev, termSourceUri);

	}

    public static <T extends DefinedTermBase<T>> TermVocabulary<T> NewInstance(TermType type, Class<T> clazz, String description, String label, String abbrev, URI termSourceUri){

        return new TermVocabulary<T>(type, description, label, abbrev, termSourceUri);

    }

// ************************* CONSTRUCTOR *************************************************

	//for hibernate use only

	@Deprecated

	protected TermVocabulary() {

		super(TermType.Unknown);

	}

	protected TermVocabulary(TermType type) {

		super(type);

	}

	protected TermVocabulary(TermType type, String term, String label, String labelAbbrev, URI termSourceUri) {

		super(type, term, label, labelAbbrev);

		setTermSourceUri(termSourceUri);

	}

	protected Set<T> newTermSet(){

	    return new HashSet<>();

	}

// ******************* METHODS *************************************************/

	public T findTermByUuid(UUID uuid){

		for(T t : terms) {

			if(t.getUuid().equals(uuid)) {

				return t;

			}

		}

		return null;

	}

	public Set<T> getTerms() {

		return terms;

	}

	public void addTerm(T term) {

	    checkTermType(term);

		term.setVocabulary(this);

		this.terms.add(term);

	}

	public void removeTerm(T term) {

		this.terms.remove(term);

		term.setVocabulary(null);

	}

	public URI getTermSourceUri() {

		return termSourceUri;

	}

	public void setTermSourceUri(URI vocabularyUri) {

		this.termSourceUri = vocabularyUri;

	}

	@Deprecated //deprecated for now as only needed for property path handling; but may become generally public in future

    public Set<TermNode> getTermRelations() {

        return super.termRelations();

    }

    /**

     * Returns the first term found having the defined idInVocabulary.

     * If number of terms with given idInVoc > 1 the result is not deterministic.

     * @param idInVoc

     * @return the term with the given idInVoc

     */

    public T getTermByIdInvocabulary(String idInVoc) {

        for (T term : getTerms() ){

            if (CdmUtils.nullSafeEqual(idInVoc, term.getIdInVocabulary())){

                return term;

            }

        }

        return null;

    }

	public int size(){

		return terms.size();

	}

	/**

	 * Returns all terms of this vocabulary sorted by their representation defined by the given language.

	 * If such an representation does not exist, the representation of the default language is testing instead for ordering.

	 * @param language

	 * @return

	 */

	public SortedSet<T> getTermsOrderedByLabels(Language language){

		TermLanguageComparator<T> comp = new TermLanguageComparator<>();

		comp.setCompareLanguage(language);

		SortedSet<T> result = new TreeSet<>(comp);

		result.addAll(getTerms());

		return result;

	}

	public TermVocabulary<T> readCsvLine(List<String> csvLine) {

		return readCsvLine(csvLine, Language.CSV_LANGUAGE());

	}

	public TermVocabulary<T> readCsvLine(List<String> csvLine, Language lang) {

		this.setUuid(UUID.fromString(csvLine.get(0)));

        String uriStr = CdmUtils.Ne(csvLine.get(1));

        this.setUri(uriStr == null? null: URI.create(uriStr));

		String label = csvLine.get(2).trim();

		String description = csvLine.get(3);

		//see  https://dev.e-taxonomy.eu/redmine/issues/3550

		this.addRepresentation(Representation.NewInstance(description, label, null, lang) );

		TermType termType = TermType.getByKey(csvLine.get(4));

		if (termType == null){

			throw new IllegalArgumentException("TermType can not be mapped: " + csvLine.get(4));

		}

		this.setTermType(termType);

		return this;

	}

	/**

     * Throws {@link IllegalArgumentException} if the given

     * term has not the same term type as this term or if term type is null.

     * @param term

     */

    private void checkTermType(IHasTermType term) {

        IHasTermType.checkTermTypes(term, this);

    }

//*********************** CLONE ********************************************************/

	/**

	 * Clones <i>this</i> TermVocabulary. This is a shortcut that enables to create

	 * a new instance that differs only slightly from <i>this</i> TermVocabulary.

	 * The terms of the original vocabulary are cloned

	 *

	 * @see eu.etaxonomy.cdm.model.term.TermBase#clone()

	 * @see java.lang.Object#clone()

	 */

	@Override

	public TermVocabulary<T> clone() {

		TermVocabulary<T> result;

		try {

			result = (TermVocabulary<T>) super.clone();

		}catch (CloneNotSupportedException e) {

			logger.warn("Object does not implement cloneable");

			e.printStackTrace();

			return null;

		}

		result.terms = new HashSet<T>();

		for (T term: this.terms){

			result.addTerm((T)term.clone());

		}

		return result;

	}

}