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/**
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* Copyright (C) 2021 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.strategy.cache.occurrence;
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import java.util.Comparator;
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import java.util.SortedSet;
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import java.util.TreeSet;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.model.agent.Institution;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.occurrence.Collection;
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import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
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import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
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/**
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* Formatting class for DerivedUnits.
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*
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* Note: this class is mostly a copy from the orignal class DerivedUnitFacadeCacheStrategy
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* in cdmlib-service. (#9678)
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*
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* @author a.mueller
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* @since 18.06.2021
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*/
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public class DerivedUnitDefaultCacheStrategy
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extends OccurrenceCacheStrategyBase<DerivedUnit>{
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private static final long serialVersionUID = -3905309456296895952L;
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(DerivedUnitDefaultCacheStrategy.class);
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private static final UUID uuid = UUID.fromString("2746bca3-f58a-4b5d-b4ec-ece9785731fe");
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@Override
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protected UUID getUuid() {return uuid;}
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private boolean skipFieldUnit = false;
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private boolean addTrailingDot = true;
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private static final FieldUnitDefaultCacheStrategy fieldUnitCacheStrategy
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= FieldUnitDefaultCacheStrategy.NewInstance(false, false);
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@Override
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protected String doGetTitleCache(DerivedUnit specimen) {
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String result = "";
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SortedSet<FieldUnit> fieldUnits = getFieldUnits(specimen);
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if(!skipFieldUnit){
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for (FieldUnit fieldUnit : fieldUnits){
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result = CdmUtils.concat("; ", fieldUnitCacheStrategy.getTitleCache(fieldUnit, true));
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}
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}
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// NOTE: regarding the string representations of MediaTypes, see https://dev.e-taxonomy.eu/redmine/issues/7608
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//exsiccatum
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String exsiccatum = null;
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exsiccatum = specimen.getExsiccatum();
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result = CdmUtils.concat("; ", result, exsiccatum);
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//Herbarium & identifier
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String barcode = getSpecimenLabel(specimen);
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if (isNotBlank(barcode)) {
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result = (result + " (" + barcode + ")").trim();
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}
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//result
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if(!skipFieldUnit){
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for (FieldUnit fieldUnit : fieldUnits){
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result = addPlantDescription(result, fieldUnit);
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}
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}
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if (addTrailingDot){
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result = CdmUtils.addTrailingDotIfNotExists(result);
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}
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return result;
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}
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private SortedSet<FieldUnit> getFieldUnits(DerivedUnit specimen) {
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SortedSet<FieldUnit> result = new TreeSet<>(getFieldUnitComparator());
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if (specimen.getOriginals() != null){
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for (SpecimenOrObservationBase<?> sob : specimen.getOriginals()){
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if (sob.isInstanceOf(FieldUnit.class)){
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result.add(CdmBase.deproxy(sob, FieldUnit.class));
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}else{
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result.addAll(getFieldUnits(CdmBase.deproxy(sob, DerivedUnit.class)));
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}
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}
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}
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return result;
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}
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//very preliminary comparator to guarantee a defined order
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private Comparator<FieldUnit> getFieldUnitComparator() {
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return new Comparator<FieldUnit>() {
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@Override
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public int compare(FieldUnit o1, FieldUnit o2) {
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return o1.getUuid().compareTo(o2.getUuid());
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}
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};
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}
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/**
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* Produces the collection barcode which is the combination of the collection code and
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* accession number.
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*
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* @param result
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* @param derivedUnit
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* @return
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*/
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public String getSpecimenLabel(DerivedUnit derivedUnit) {
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String code = getCode(derivedUnit);
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String identifier = getUnitNumber(derivedUnit /*, code*/);
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String collectionData = CdmUtils.concat(" ", code, identifier);
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return collectionData;
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}
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/**
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* Computes the unit number which might be an accession number, barcode, catalogue number, ...
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* In future if the unit number starts with the same string as the barcode
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* it might be replaced.
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* @param derivedUnit the derived unit facade
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*/
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private String getUnitNumber(DerivedUnit derivedUnit) {
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String result;
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if (isNotBlank(derivedUnit.getAccessionNumber())){
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result = derivedUnit.getAccessionNumber();
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}else if (isNotBlank(derivedUnit.getBarcode())){
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result = derivedUnit.getBarcode();
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}else{
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result = derivedUnit.getCatalogNumber();
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}
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String code = getCode(derivedUnit);
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if(result != null){
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result = result.trim();
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if(isNotBlank(code) && result.startsWith(code + " ")){
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result = result.replaceAll("^" + code + "\\s", "");
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}
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}
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return result;
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}
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private String getCode(DerivedUnit derivedUnit) {
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String code = "";
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if(derivedUnit.getCollection() != null){
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code = derivedUnit.getCollection().getCode();
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if (isBlank(code)){
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code = derivedUnit.getCollection().getName();
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}
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if (isBlank(code)){
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Institution institution = derivedUnit.getCollection().getInstitute();
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if (institution != null){
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code = institution.getCode();
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}
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if (isBlank(code)){
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Collection superCollection = derivedUnit.getCollection().getSuperCollection();
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if (superCollection != null){
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code = superCollection.getCode();
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}
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}
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}
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}
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return code;
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}
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}
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