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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.api.service;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import org.hibernate.criterion.Criterion;
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import org.springframework.transaction.annotation.Transactional;
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import eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator;
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import eu.etaxonomy.cdm.api.service.dto.IdentifiedEntityDTO;
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import eu.etaxonomy.cdm.api.service.dto.MarkedEntityDTO;
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import eu.etaxonomy.cdm.api.service.pager.Pager;
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import eu.etaxonomy.cdm.api.service.pager.impl.DefaultPagerImpl;
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import eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor;
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import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
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import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.common.DefinedTerm;
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import eu.etaxonomy.cdm.model.common.ISourceable;
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import eu.etaxonomy.cdm.model.common.IdentifiableEntity;
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import eu.etaxonomy.cdm.model.common.IdentifiableSource;
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import eu.etaxonomy.cdm.model.common.LSID;
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import eu.etaxonomy.cdm.model.common.MarkerType;
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import eu.etaxonomy.cdm.model.media.Rights;
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import eu.etaxonomy.cdm.model.name.INonViralName;
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import eu.etaxonomy.cdm.model.name.ITaxonName;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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import eu.etaxonomy.cdm.persistence.dao.common.IIdentifiableDao;
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import eu.etaxonomy.cdm.persistence.dao.hibernate.HibernateBeanInitializer;
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import eu.etaxonomy.cdm.persistence.dao.initializer.AutoPropertyInitializer;
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import eu.etaxonomy.cdm.persistence.dto.UuidAndTitleCache;
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import eu.etaxonomy.cdm.persistence.query.MatchMode;
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import eu.etaxonomy.cdm.persistence.query.OrderHint;
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import eu.etaxonomy.cdm.persistence.query.OrderHint.SortOrder;
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import eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy;
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import eu.etaxonomy.cdm.strategy.match.DefaultMatchStrategy;
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import eu.etaxonomy.cdm.strategy.match.IMatchStrategy;
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import eu.etaxonomy.cdm.strategy.match.IMatchable;
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import eu.etaxonomy.cdm.strategy.match.MatchException;
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import eu.etaxonomy.cdm.strategy.merge.IMergable;
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import eu.etaxonomy.cdm.strategy.merge.IMergeStrategy;
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import eu.etaxonomy.cdm.strategy.merge.MergeException;
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public abstract class IdentifiableServiceBase<T extends IdentifiableEntity, DAO extends IIdentifiableDao<T>> extends AnnotatableServiceBase<T,DAO>
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implements IIdentifiableEntityService<T>{
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protected static final int UPDATE_TITLE_CACHE_DEFAULT_STEP_SIZE = 1000;
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protected static final Logger logger = Logger.getLogger(IdentifiableServiceBase.class);
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@Override
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@Transactional(readOnly = true)
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public Pager<Rights> getRights(T t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
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Integer numberOfResults = dao.countRights(t);
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List<Rights> results = new ArrayList<Rights>();
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if(numberOfResults > 0) { // no point checking again //TODO use AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)
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results = dao.getRights(t, pageSize, pageNumber,propertyPaths);
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}
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return new DefaultPagerImpl<>(pageNumber, numberOfResults, pageSize, results);
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}
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@Override
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@Transactional(readOnly = true)
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public Pager<IdentifiableSource> getSources(T t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
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Integer numberOfResults = dao.countSources(t);
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List<IdentifiableSource> results = new ArrayList<>();
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if(numberOfResults > 0) { // no point checking again //TODO use AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)
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results = dao.getSources(t, pageSize, pageNumber,propertyPaths);
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}
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return new DefaultPagerImpl<>(pageNumber, numberOfResults, pageSize, results);
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}
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@Transactional(readOnly = false)
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@Override
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public T replace(T x, T y) {
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return dao.replace(x, y);
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}
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/**
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* FIXME Candidate for harmonization
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* Given that this method is strongly typed, and generic, could we not simply expose it as
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* List<T> findByTitle(String title) as it is somewhat less cumbersome. Admittedly, I don't
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* understand what is going on with the configurators etc. so maybe there is a good reason for
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* the design of this method.
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* @param title
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* @return
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*/
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@Transactional(readOnly = true)
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protected List<T> findCdmObjectsByTitle(String title){
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return ((IIdentifiableDao)dao).findByTitle(title);
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}
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@Transactional(readOnly = true)
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protected List<T> findCdmObjectsByTitle(String title, Class<T> clazz){
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return ((IIdentifiableDao)dao).findByTitleAndClass(title, clazz);
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}
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@Transactional(readOnly = true)
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protected List<T> findCdmObjectsByTitle(String title, CdmBase sessionObject){
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return ((IIdentifiableDao)dao).findByTitle(title, sessionObject);
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}
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/*
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* TODO - Migrated from CommonServiceBase
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*/
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@Transactional(readOnly = true)
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@Override
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public ISourceable getSourcedObjectByIdInSource(Class clazz, String idInSource, String idNamespace) {
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ISourceable result = null;
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List<T> list = dao.findOriginalSourceByIdInSource(idInSource, idNamespace);
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if (! list.isEmpty()){
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result = list.get(0);
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}
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return result;
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}
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@Transactional(readOnly = true)
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@Override
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public List<UuidAndTitleCache<T>> getUuidAndTitleCache(Integer limit, String pattern) {
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return dao.getUuidAndTitleCache(limit, pattern);
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}
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@Transactional(readOnly = true)
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@Override
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public <S extends T> List<UuidAndTitleCache<S>> getUuidAndTitleCache(Class<S> clazz,Integer limit, String pattern) {
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return dao.getUuidAndTitleCache(clazz, limit, pattern);
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}
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@Transactional(readOnly = true)
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@Override
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public String getTitleCache(UUID uuid, boolean refresh){
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return dao.getTitleCache(uuid, refresh);
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}
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@Transactional(readOnly = true)
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@Override
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public Pager<T> findByTitle(Class<? extends T> clazz, String queryString,MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
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long numberOfResults = dao.countByTitle(clazz, queryString, matchmode, criteria);
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List<T> results = new ArrayList<>();
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if(numberOfResults > 0) { // no point checking again //TODO use AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)
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results = dao.findByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
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}
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return new DefaultPagerImpl<>(pageNumber, numberOfResults, pageSize, results);
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}
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@Transactional(readOnly = true)
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@Override
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public Pager<T> findByTitle(IIdentifiableEntityServiceConfigurator<T> config){
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return findByTitle(config.getClazz(), config.getTitleSearchStringSqlized(), config.getMatchMode(), config.getCriteria(), config.getPageSize(), config.getPageNumber(), config.getOrderHints(), config.getPropertyPaths());
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}
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@Transactional(readOnly = true)
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@Override
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public List<T> listByTitle(Class<? extends T> clazz, String queryString,MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
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long numberOfResults = dao.countByTitle(clazz, queryString, matchmode, criteria);
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List<T> results = new ArrayList<>();
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if(numberOfResults > 0) { // no point checking again //TODO use AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)
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results = dao.findByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
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}
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return results;
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}
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@Transactional(readOnly = true)
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@Override
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public Pager<T> findTitleCache(Class<? extends T> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, MatchMode matchMode){
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long numberOfResults = dao.countTitleCache(clazz, queryString, matchMode);
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List<T> results = new ArrayList<>();
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if(numberOfResults > 0) { // no point checking again //TODO use AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)
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results = dao.findTitleCache(clazz, queryString, pageSize, pageNumber, orderHints, matchMode);
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}
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long r = 0;
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r += numberOfResults;
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return new DefaultPagerImpl<>(pageNumber, r , pageSize, results);
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}
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@Transactional(readOnly = true)
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@Override
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public List<T> listByReferenceTitle(Class<? extends T> clazz, String queryString,MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
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long numberOfResults = dao.countByReferenceTitle(clazz, queryString, matchmode, criteria);
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List<T> results = new ArrayList<>();
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if(numberOfResults > 0) { // no point checking again //TODO use AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)
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results = dao.findByReferenceTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
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}
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return results;
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}
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@Transactional(readOnly = true)
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@Override
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public T find(LSID lsid) {
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return dao.find(lsid);
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}
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@Transactional(readOnly = true)
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@Override
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public Pager<T> search(Class<? extends T> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
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Integer numberOfResults = dao.count(clazz,queryString);
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List<T> results = new ArrayList<>();
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if(numberOfResults > 0) { // no point checking again //TODO use AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)
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results = dao.search(clazz,queryString, pageSize, pageNumber, orderHints, propertyPaths);
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}
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return new DefaultPagerImpl<>(pageNumber, numberOfResults, pageSize, results);
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}
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@Override
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@Transactional(readOnly = false)
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public void updateTitleCache() {
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updateTitleCache(null, null, null, null);
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}
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@Transactional(readOnly = false) //TODO check transactional behaviour, e.g. what happens with the session if count is very large
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protected <S extends T > void updateTitleCacheImpl(Class<S> clazz, Integer stepSize, IIdentifiableEntityCacheStrategy<T> cacheStrategy, IProgressMonitor monitor) {
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if (stepSize == null){
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stepSize = UPDATE_TITLE_CACHE_DEFAULT_STEP_SIZE;
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}
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if (monitor == null){
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monitor = DefaultProgressMonitor.NewInstance();
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}
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int count = dao.count(clazz);
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monitor.beginTask("update titles", count);
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int worked = 0;
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for(int i = 0 ; i < count ; i = i + stepSize){
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// not sure if such strict ordering is necessary here, but for safety reasons I do it
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ArrayList<OrderHint> orderHints = new ArrayList<>();
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orderHints.add( new OrderHint("id", OrderHint.SortOrder.ASCENDING));
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Map<Class<? extends CdmBase>, AutoPropertyInitializer<CdmBase>> oldAutoInit = switchOfAutoinitializer();
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List<S> list = this.list(clazz, stepSize, i, orderHints, null);
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switchOnOldAutoInitializer(oldAutoInit);
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List<T> entitiesToUpdate = new ArrayList<>();
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for (T entity : list){
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HibernateProxyHelper.deproxy(entity, clazz);
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if (entity.isProtectedTitleCache() == false){
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updateTitleCacheForSingleEntity(cacheStrategy, entitiesToUpdate, entity);
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}
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worked++;
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}
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for (T entity: entitiesToUpdate){
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if (entity.getTitleCache() != null){
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//System.err.println(entity.getTitleCache());
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}else{
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//System.err.println("no titleCache" + ((TaxonName)entity).getNameCache());
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}
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}
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saveOrUpdate(entitiesToUpdate);
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monitor.worked(list.size());
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if (monitor.isCanceled()){
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monitor.done();
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return;
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}
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}
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monitor.done();
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}
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/**
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* Brings back all auto initializers to the bean initializer
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* @see #switchOfAutoinitializer()
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* @param oldAutoInit
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*/
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protected void switchOnOldAutoInitializer(
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Map<Class<? extends CdmBase>, AutoPropertyInitializer<CdmBase>> oldAutoInit) {
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HibernateBeanInitializer initializer = (HibernateBeanInitializer)this.appContext.getBean("defaultBeanInitializer");
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initializer.setBeanAutoInitializers(oldAutoInit);
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}
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/**
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* Removes all auto initializers from the bean initializer
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*
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* @see #switchOnOldAutoInitializer(Map)
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* @return
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*/
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protected Map<Class<? extends CdmBase>, AutoPropertyInitializer<CdmBase>> switchOfAutoinitializer() {
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HibernateBeanInitializer initializer = (HibernateBeanInitializer)this.appContext.getBean("defaultBeanInitializer");
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Map<Class<? extends CdmBase>, AutoPropertyInitializer<CdmBase>> oldAutoInitializers = initializer.getBeanAutoInitializers();
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Map<Class<? extends CdmBase>, AutoPropertyInitializer<CdmBase>> map = new HashMap<>();
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initializer.setBeanAutoInitializers(map);
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return oldAutoInitializers;
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}
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/**
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* @param cacheStrategy
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* @param entitiesToUpdate
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* @param entity
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*/
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/**
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* @param cacheStrategy
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* @param entitiesToUpdate
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* @param entity
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*/
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@SuppressWarnings("unchecked")
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private void updateTitleCacheForSingleEntity(
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IIdentifiableEntityCacheStrategy<T> cacheStrategy,
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List<T> entitiesToUpdate,
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T entity) {
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//assert (entity.isProtectedTitleCache() == false );
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entity = CdmBase.deproxy(entity);
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//exclude recursive inreferences
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if (entity.isInstanceOf(Reference.class)){
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Reference ref = (Reference)entity;
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if (ref.getInReference() != null && ref.getInReference().equals(ref)){
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return;
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}
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}
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//define the correct cache strategy
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IIdentifiableEntityCacheStrategy entityCacheStrategy = cacheStrategy;
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if (entityCacheStrategy == null){
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entityCacheStrategy = entity.getCacheStrategy();
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//FIXME find out why the wrong cache strategy is loaded here, see #1876
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if (entity instanceof Reference){
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entityCacheStrategy = ReferenceFactory.newReference(((Reference)entity).getType()).getCacheStrategy();
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}
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}
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//old titleCache
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entity.setProtectedTitleCache(true);
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String oldTitleCache = entity.getTitleCache();
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entity.setTitleCache(oldTitleCache, false); //before we had entity.setProtectedTitleCache(false) but this deleted the titleCache itself
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entity.setCacheStrategy(entityCacheStrategy);
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//NonViralNames and Reference have more caches //TODO handle in NameService
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String oldNameCache = null;
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String oldFullTitleCache = null;
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String oldAbbrevTitleCache = null;
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if (entity instanceof TaxonName ){
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if (((TaxonName) entity).isNonViral()) {
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try{
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INonViralName nvn = (INonViralName) entity;
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if (!nvn.isProtectedNameCache()){
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nvn.setProtectedNameCache(true);
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oldNameCache = nvn.getNameCache();
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nvn.setProtectedNameCache(false);
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}
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if (!nvn.isProtectedFullTitleCache()){
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nvn.setProtectedFullTitleCache(true);
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oldFullTitleCache = nvn.getFullTitleCache();
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nvn.setProtectedFullTitleCache(false);
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}
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}catch(ClassCastException e){
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System.out.println("entity: " + entity.getTitleCache());
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}
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}
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}else if (entity instanceof Reference){
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Reference ref = (Reference) entity;
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if (!ref.isProtectedAbbrevTitleCache()){
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ref.setProtectedAbbrevTitleCache(true);
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382
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oldAbbrevTitleCache = ref.getAbbrevTitleCache();
|
383
|
ref.setProtectedAbbrevTitleCache(false);
|
384
|
}
|
385
|
}
|
386
|
setOtherCachesNull(entity);
|
387
|
String newTitleCache= null;
|
388
|
INonViralName nvn = null; //TODO find better solution
|
389
|
try{
|
390
|
if (entity instanceof TaxonName){
|
391
|
nvn = (ITaxonName) entity;
|
392
|
newTitleCache = entityCacheStrategy.getTitleCache(nvn);
|
393
|
} else{
|
394
|
newTitleCache = entityCacheStrategy.getTitleCache(entity);
|
395
|
}
|
396
|
}catch (ClassCastException e){
|
397
|
nvn = HibernateProxyHelper.deproxy(entity, TaxonName.class);
|
398
|
newTitleCache = entityCacheStrategy.getTitleCache(nvn);
|
399
|
}
|
400
|
|
401
|
if ( oldTitleCache == null || ! oldTitleCache.equals(newTitleCache) ){
|
402
|
entity.setTitleCache(null, false);
|
403
|
String newCache = entity.getTitleCache();
|
404
|
|
405
|
if (newCache == null){
|
406
|
logger.warn("newCache should never be null");
|
407
|
}
|
408
|
if (oldTitleCache == null){
|
409
|
logger.info("oldTitleCache should never be null");
|
410
|
}
|
411
|
if (nvn != null){
|
412
|
nvn.getNameCache();
|
413
|
nvn.getFullTitleCache();
|
414
|
}
|
415
|
if (entity instanceof Reference){
|
416
|
Reference ref = (Reference) entity;
|
417
|
ref.getAbbrevTitleCache();
|
418
|
}
|
419
|
entitiesToUpdate.add(entity);
|
420
|
}else if (nvn != null){
|
421
|
String newNameCache = nvn.getNameCache();
|
422
|
String newFullTitleCache = nvn.getFullTitleCache();
|
423
|
if ((oldNameCache == null && !nvn.isProtectedNameCache()) || (oldNameCache != null && !oldNameCache.equals(newNameCache))){
|
424
|
entitiesToUpdate.add(entity);
|
425
|
}else if ((oldFullTitleCache == null && !nvn.isProtectedFullTitleCache()) || (oldFullTitleCache != null && !oldFullTitleCache.equals(newFullTitleCache))){
|
426
|
entitiesToUpdate.add(entity);
|
427
|
}
|
428
|
}else if (entity instanceof Reference){
|
429
|
Reference ref = (Reference) entity;
|
430
|
String newAbbrevTitleCache = ref.getAbbrevTitleCache();
|
431
|
if ( (oldAbbrevTitleCache == null && !ref.isProtectedAbbrevTitleCache() ) || (oldAbbrevTitleCache != null && !oldAbbrevTitleCache.equals(newAbbrevTitleCache))){
|
432
|
entitiesToUpdate.add(entity);
|
433
|
}
|
434
|
}
|
435
|
}
|
436
|
|
437
|
|
438
|
/**
|
439
|
* Needs override if not only the title cache should be set to null to
|
440
|
* generate the correct new title cache
|
441
|
*/
|
442
|
protected void setOtherCachesNull(T entity) {
|
443
|
return;
|
444
|
}
|
445
|
|
446
|
private class DeduplicateState{
|
447
|
String lastTitleCache;
|
448
|
Integer pageSize = 50;
|
449
|
int nPages = 3;
|
450
|
int startPage = 0;
|
451
|
boolean isCompleted = false;
|
452
|
int result;
|
453
|
}
|
454
|
|
455
|
@Override
|
456
|
@Transactional(readOnly = false)
|
457
|
public int deduplicate(Class<? extends T> clazz, IMatchStrategy matchStrategy, IMergeStrategy mergeStrategy) {
|
458
|
DeduplicateState dedupState = new DeduplicateState();
|
459
|
|
460
|
if (clazz == null){
|
461
|
logger.warn("Deduplication clazz must not be null!");
|
462
|
return 0;
|
463
|
}
|
464
|
if (! ( IMatchable.class.isAssignableFrom(clazz) && IMergable.class.isAssignableFrom(clazz) ) ){
|
465
|
logger.warn("Deduplication implemented only for classes implementing IMatchable and IMergeable. No deduplication performed!");
|
466
|
return 0;
|
467
|
}
|
468
|
Class matchableClass = clazz;
|
469
|
if (matchStrategy == null){
|
470
|
matchStrategy = DefaultMatchStrategy.NewInstance(matchableClass);
|
471
|
}
|
472
|
List<T> nextGroup = new ArrayList<>();
|
473
|
|
474
|
int result = 0;
|
475
|
// double countTotal = count(clazz);
|
476
|
//
|
477
|
// Number countPagesN = Math.ceil(countTotal/dedupState.pageSize.doubleValue()) ;
|
478
|
// int countPages = countPagesN.intValue();
|
479
|
//
|
480
|
|
481
|
List<OrderHint> orderHints = Arrays.asList(new OrderHint[]{new OrderHint("titleCache", SortOrder.ASCENDING)});
|
482
|
|
483
|
while (! dedupState.isCompleted){
|
484
|
//get x page sizes
|
485
|
List<T> objectList = getPages(clazz, dedupState, orderHints);
|
486
|
//after each page check if any changes took place
|
487
|
int nUnEqualPages = handleAllPages(objectList, dedupState, nextGroup, matchStrategy, mergeStrategy);
|
488
|
nUnEqualPages = nUnEqualPages + dedupState.pageSize * dedupState.startPage;
|
489
|
//refresh start page counter
|
490
|
int finishedPages = nUnEqualPages / dedupState.pageSize;
|
491
|
dedupState.startPage = finishedPages;
|
492
|
}
|
493
|
|
494
|
result += handleLastGroup(nextGroup, matchStrategy, mergeStrategy);
|
495
|
return result;
|
496
|
}
|
497
|
|
498
|
|
499
|
private int handleAllPages(List<T> objectList, DeduplicateState dedupState, List<T> nextGroup, IMatchStrategy matchStrategy, IMergeStrategy mergeStrategy) {
|
500
|
int nUnEqual = 0;
|
501
|
for (T object : objectList){
|
502
|
String currentTitleCache = object.getTitleCache();
|
503
|
if (currentTitleCache != null && currentTitleCache.equals(dedupState.lastTitleCache)){
|
504
|
//=titleCache
|
505
|
nextGroup.add(object);
|
506
|
}else{
|
507
|
//<> titleCache
|
508
|
dedupState.result += handleLastGroup(nextGroup, matchStrategy, mergeStrategy);
|
509
|
nextGroup = new ArrayList<>();
|
510
|
nextGroup.add(object);
|
511
|
nUnEqual++;
|
512
|
}
|
513
|
dedupState.lastTitleCache = currentTitleCache;
|
514
|
}
|
515
|
handleLastGroup(nextGroup, matchStrategy, mergeStrategy);
|
516
|
return nUnEqual;
|
517
|
}
|
518
|
|
519
|
private List<T> getPages(Class<? extends T> clazz, DeduplicateState dedupState, List<OrderHint> orderHints) {
|
520
|
List<T> result = new ArrayList<>();
|
521
|
for (int pageNo = dedupState.startPage; pageNo < dedupState.startPage + dedupState.nPages; pageNo++){
|
522
|
List<T> objectList = listByTitle(clazz, null, null, null, dedupState.pageSize, pageNo, orderHints, null);
|
523
|
result.addAll(objectList);
|
524
|
}
|
525
|
if (result.size()< dedupState.nPages * dedupState.pageSize ){
|
526
|
dedupState.isCompleted = true;
|
527
|
}
|
528
|
return result;
|
529
|
}
|
530
|
|
531
|
private int handleLastGroup(List<T> group, IMatchStrategy matchStrategy, IMergeStrategy mergeStrategy) {
|
532
|
int result = 0;
|
533
|
int size = group.size();
|
534
|
Set<Integer> exclude = new HashSet<>(); //set to collect all objects, that have been merged already
|
535
|
for (int i = 0; i < size - 1; i++){
|
536
|
if (exclude.contains(i)){
|
537
|
continue;
|
538
|
}
|
539
|
for (int j = i + 1; j < size; j++){
|
540
|
if (exclude.contains(j)){
|
541
|
continue;
|
542
|
}
|
543
|
T firstObject = group.get(i);
|
544
|
T secondObject = group.get(j);
|
545
|
|
546
|
try {
|
547
|
if (matchStrategy.invoke((IMatchable)firstObject, (IMatchable)secondObject)){
|
548
|
commonService.merge((IMergable)firstObject, (IMergable)secondObject, mergeStrategy);
|
549
|
exclude.add(j);
|
550
|
result++;
|
551
|
}
|
552
|
} catch (MatchException e) {
|
553
|
logger.warn("MatchException when trying to match " + firstObject.getTitleCache());
|
554
|
e.printStackTrace();
|
555
|
} catch (MergeException e) {
|
556
|
logger.warn("MergeException when trying to merge " + firstObject.getTitleCache());
|
557
|
e.printStackTrace();
|
558
|
}
|
559
|
}
|
560
|
}
|
561
|
return result;
|
562
|
}
|
563
|
|
564
|
@Transactional(readOnly = true)
|
565
|
@Override
|
566
|
public Integer countByTitle(Class<? extends T> clazz, String queryString,MatchMode matchmode, List<Criterion> criteria){
|
567
|
long numberOfResults = dao.countByTitle(clazz, queryString, matchmode, criteria);
|
568
|
|
569
|
return ((Number)numberOfResults).intValue();
|
570
|
}
|
571
|
|
572
|
@Transactional(readOnly = true)
|
573
|
@Override
|
574
|
public Integer countByTitle(IIdentifiableEntityServiceConfigurator<T> config){
|
575
|
return countByTitle(config.getClazz(), config.getTitleSearchStringSqlized(),
|
576
|
config.getMatchMode(), config.getCriteria());
|
577
|
|
578
|
}
|
579
|
|
580
|
@Override
|
581
|
@Transactional(readOnly = true)
|
582
|
public <S extends T> Pager<IdentifiedEntityDTO<S>> findByIdentifier(
|
583
|
Class<S> clazz, String identifier, DefinedTerm identifierType, MatchMode matchmode,
|
584
|
boolean includeEntity, Integer pageSize,
|
585
|
Integer pageNumber, List<String> propertyPaths) {
|
586
|
|
587
|
Integer numberOfResults = dao.countByIdentifier(clazz, identifier, identifierType, matchmode);
|
588
|
List<Object[]> daoResults = new ArrayList<>();
|
589
|
if(numberOfResults > 0) { // no point checking again
|
590
|
daoResults = dao.findByIdentifier(clazz, identifier, identifierType,
|
591
|
matchmode, includeEntity, pageSize, pageNumber, propertyPaths);
|
592
|
}
|
593
|
|
594
|
List<IdentifiedEntityDTO<S>> result = new ArrayList<>();
|
595
|
for (Object[] daoObj : daoResults){
|
596
|
if (includeEntity){
|
597
|
result.add(new IdentifiedEntityDTO<>((DefinedTerm)daoObj[0], (String)daoObj[1], (S)daoObj[2]));
|
598
|
}else{
|
599
|
result.add(new IdentifiedEntityDTO<>((DefinedTerm)daoObj[0], (String)daoObj[1], (UUID)daoObj[2], (String)daoObj[3], null));
|
600
|
}
|
601
|
}
|
602
|
return new DefaultPagerImpl<>(pageNumber, numberOfResults, pageSize, result);
|
603
|
}
|
604
|
|
605
|
@Override
|
606
|
@Transactional(readOnly = true)
|
607
|
public <S extends T> List<IdentifiedEntityDTO<S>> listByIdentifier(
|
608
|
Class<S> clazz, String identifier, DefinedTerm identifierType, MatchMode matchmode,
|
609
|
boolean includeEntity, List<String> propertyPaths, Integer limit) {
|
610
|
|
611
|
Integer numberOfResults = dao.countByIdentifier(clazz, identifier, identifierType, matchmode);
|
612
|
List<Object[]> daoResults = new ArrayList<>();
|
613
|
if(numberOfResults > 0) { // no point checking again
|
614
|
daoResults = dao.findByIdentifier(clazz, identifier, identifierType,
|
615
|
matchmode, includeEntity, limit, 0, propertyPaths);
|
616
|
}
|
617
|
|
618
|
List<IdentifiedEntityDTO<S>> result = new ArrayList<>();
|
619
|
for (Object[] daoObj : daoResults){
|
620
|
if (includeEntity){
|
621
|
result.add(new IdentifiedEntityDTO<>((DefinedTerm)daoObj[0], (String)daoObj[1], (S)daoObj[2]));
|
622
|
}else{
|
623
|
result.add(new IdentifiedEntityDTO<>((DefinedTerm)daoObj[0], (String)daoObj[1], (UUID)daoObj[2], (String)daoObj[3], null));
|
624
|
}
|
625
|
}
|
626
|
return result;
|
627
|
}
|
628
|
|
629
|
|
630
|
@Override
|
631
|
@Transactional(readOnly = true)
|
632
|
public <S extends T> Pager<MarkedEntityDTO<S>> findByMarker(
|
633
|
Class<S> clazz, MarkerType markerType, Boolean markerValue,
|
634
|
boolean includeEntity, Integer pageSize,
|
635
|
Integer pageNumber, List<String> propertyPaths) {
|
636
|
|
637
|
Long numberOfResults = dao.countByMarker(clazz, markerType, markerValue);
|
638
|
List<Object[]> daoResults = new ArrayList<>();
|
639
|
if(numberOfResults > 0) { // no point checking again
|
640
|
daoResults = dao.findByMarker(clazz, markerType, markerValue, includeEntity,
|
641
|
pageSize, pageNumber, propertyPaths);
|
642
|
}
|
643
|
|
644
|
List<MarkedEntityDTO<S>> result = new ArrayList<>();
|
645
|
for (Object[] daoObj : daoResults){
|
646
|
if (includeEntity){
|
647
|
result.add(new MarkedEntityDTO<>((MarkerType)daoObj[0], (Boolean)daoObj[1], (S)daoObj[2]));
|
648
|
}else{
|
649
|
result.add(new MarkedEntityDTO<>((MarkerType)daoObj[0], (Boolean)daoObj[1], (UUID)daoObj[2], (String)daoObj[3]));
|
650
|
}
|
651
|
}
|
652
|
return new DefaultPagerImpl<>(pageNumber, numberOfResults, pageSize, result);
|
653
|
}
|
654
|
|
655
|
|
656
|
}
|
657
|
|