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// $Id$
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/**
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* Copyright (C) 2009 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.csv.redlist.out;
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import java.io.PrintWriter;
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import java.net.URISyntaxException;
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import java.util.ArrayList;
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import java.util.Collections;
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import java.util.List;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.io.dwca.TermUri;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.taxon.Classification;
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/**
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* @author a.oppermann
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* @date 18.10.2012
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*
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*/
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public class CsvTaxRecordRedlist extends CsvRecordBaseRedlist{
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(CsvTaxRecordRedlist.class);
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private String scientificNameId;
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private String scientificName;
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private String taxonomicStatus;
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private CsvId datasetId;
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private String datasetName;
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private ArrayList<String> synonyms;
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private String threadStatus;
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private ArrayList<String> countryCodes;
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private ArrayList<String> headlines;
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private boolean isHeadLinePrinted;
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private List<Feature> features;
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private List<List<String>> featuresCells;
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/**
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*
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* @param metaDataRecord
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* @param config
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*/
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public CsvTaxRecordRedlist(CsvMetaDataRecordRedlist metaDataRecord, CsvTaxExportConfiguratorRedlist config){
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super(metaDataRecord, config);
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datasetId = new CsvId(config);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.dwca.out.DwcaRecordBase#registerKnownFields()
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*/
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protected void registerKnownFields(){
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try {
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addKnownField(TermUri.DWC_SCIENTIFIC_NAME);
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addKnownField(TermUri.DWC_TAXONOMIC_STATUS);
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addKnownField(TermUri.DWC_DATASET_NAME);
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addKnownField("countryCode", "http://rs.tdwg.org/dwc/terms/countryCode");
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} catch (URISyntaxException e) {
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throw new RuntimeException(e);
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}
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}
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public void write(PrintWriter writer) {
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if(isHeadLinePrinted()){
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printHeadline(writer, setHeadlines(), TermUri.DWC_DATASET_NAME);
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isHeadLinePrinted=false;
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}
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print(datasetName, writer, IS_FIRST, TermUri.DWC_DATASET_NAME);
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print(scientificName, writer, IS_NOT_FIRST, TermUri.DWC_SCIENTIFIC_NAME);
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print(scientificNameId, writer, IS_NOT_FIRST, TermUri.DWC_DATASET_ID);
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print(taxonomicStatus, writer, IS_NOT_FIRST, TermUri.DWC_TAXONOMIC_STATUS);
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print(synonyms, TermUri.DWC_SCIENTIFIC_NAME, writer);
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print(countryCodes, TermUri.DWC_COUNTRY_CODE, writer);
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if(features != null ||featuresCells != null || !featuresCells.isEmpty()){
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for(List<String> featureList : featuresCells) {
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print((ArrayList<String>)featureList, TermUri.DWC_LIFESTAGE, writer);
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}
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}
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writer.println();
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}
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public String getDatasetName() {
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return datasetName;
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}
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public void setDatasetName(String datasetName) {
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this.datasetName = datasetName;
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}
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public String getScientificName() {
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return scientificName;
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}
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public void setScientificName(String scientificName) {
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this.scientificName = scientificName;
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}
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public String getTaxonomicStatus() {
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return taxonomicStatus;
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}
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public void setTaxonomicStatus(String taxonomicStatus) {
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this.taxonomicStatus = taxonomicStatus;
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}
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public String getDatasetId() {
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return datasetId.getId();
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}
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public void setDatasetId(Classification classification) {
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this.datasetId.setId(classification);
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}
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public void setSynonyms(ArrayList<String> synonyms){
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this.synonyms = synonyms;
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}
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public ArrayList<String> getSynonyms(){
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return synonyms;
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}
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public String getThreadStatus() {
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return threadStatus;
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}
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public void setThreadStatus(String threadStatus) {
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this.threadStatus = threadStatus;
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}
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public void setCountryCode(ArrayList<String> countryCodes) {
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this.countryCodes = countryCodes;
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}
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//FIXME: hard coded header lines
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private ArrayList<String> setHeadlines(){
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headlines = new ArrayList<String>();
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Collections.addAll(headlines, "Classification","Wissenschaftlicher Name","Taxon ID","Taxon Status","Synonym","Distribution");
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if(features != null || !features.isEmpty()){
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for(Feature f : features) {
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headlines.add(f.getLabel());
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}
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}
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return headlines;
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}
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public boolean isHeadLinePrinted() {
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return isHeadLinePrinted;
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}
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public void setHeadLinePrinted(boolean isHeadLinePrinted) {
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this.isHeadLinePrinted = isHeadLinePrinted;
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}
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public void setScientificNameId(String scientificNameId) {
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this.scientificNameId = scientificNameId;
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}
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public void setPrintFeatures(List<Feature> features) {
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this.features = features;
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}
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public void setFeatures(List<List<String>> featureCells) {
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this.featuresCells = featureCells;
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}
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}
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