Revision 09da8d56
Added by Andreas Müller almost 2 years ago
| cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/cdmLight/CdmLightClassificationExport.java | ||
|---|---|---|
| 256 | 256 |
state.getNodeChildrenMap().put(root.getUuid(), childNodes); |
| 257 | 257 |
|
| 258 | 258 |
// add root to node map |
| 259 |
|
|
| 260 | 259 |
} |
| 261 | 260 |
TaxonNodeDto rootDto = new TaxonNodeDto(root); |
| 262 | 261 |
UUID parentUuid = root.getParent() != null ? root.getParent().getUuid() |
| ... | ... | |
| 268 | 267 |
List<TaxonNodeDto> rootList = new ArrayList<>(); |
| 269 | 268 |
rootList.add(rootDto); |
| 270 | 269 |
state.getNodeChildrenMap().put(parentUuid, rootList); |
| 271 |
|
|
| 272 | 270 |
} |
| 273 | 271 |
if (root.hasTaxon()) {
|
| 274 | 272 |
handleTaxon(state, root); |
| 275 |
|
|
| 276 | 273 |
} |
| 277 | 274 |
} catch (Exception e) {
|
| 278 | 275 |
state.getResult().addException(e, "An unexpected error occurred when handling taxonNode " |
| ... | ... | |
| 297 | 294 |
Taxon taxon = CdmBase.deproxy(taxonNode.getTaxon()); |
| 298 | 295 |
|
| 299 | 296 |
try {
|
| 297 |
//accepted name |
|
| 300 | 298 |
TaxonName name = taxon.getName(); |
| 301 | 299 |
handleName(state, name, taxon, true); |
| 300 |
|
|
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//homotypic group / synonyms |
|
| 302 | 302 |
HomotypicalGroup homotypicGroup = taxon.getHomotypicGroup(); |
| 303 | 303 |
int index = 0; |
| 304 | 304 |
int homotypicGroupIndex = 0; |
| ... | ... | |
| 318 | 318 |
homotypicGroupIndex++; |
| 319 | 319 |
} |
| 320 | 320 |
|
| 321 |
//pro parte synonyms |
|
| 321 | 322 |
index = 0; |
| 322 | 323 |
for (Taxon tax : taxon.getAllProParteSynonyms()) {
|
| 323 | 324 |
handleProPartePartialMisapplied(state, tax, taxon, true, false, index); |
| 324 | 325 |
index++; |
| 325 | 326 |
} |
| 326 | 327 |
|
| 327 |
|
|
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//misapplications |
|
| 328 | 329 |
for (Taxon tax : taxon.getAllMisappliedNames()) {
|
| 329 | 330 |
handleProPartePartialMisapplied(state, tax, taxon, false, true, index); |
| 330 | 331 |
index++; |
| 331 | 332 |
} |
| 332 | 333 |
|
| 334 |
//taxon table |
|
| 333 | 335 |
CdmLightExportTable table = CdmLightExportTable.TAXON; |
| 334 | 336 |
String[] csvLine = new String[table.getSize()]; |
| 335 | 337 |
|
| ... | ... | |
| 357 | 359 |
taxonNode.getClassification()); |
| 358 | 360 |
csvLine[table.getIndex(CdmLightExportTable.CLASSIFICATION_TITLE)] = taxonNode.getClassification() |
| 359 | 361 |
.getTitleCache(); |
| 360 |
|
|
| 361 | 362 |
csvLine[table.getIndex(CdmLightExportTable.PUBLISHED)] = taxon.isPublish() ? "1" : "0"; |
| 363 |
|
|
| 364 |
//taxon node |
|
| 362 | 365 |
csvLine[table.getIndex(CdmLightExportTable.EXCLUDED)] = taxonNode.isExcluded() ? "1" : "0"; |
| 366 |
csvLine[table.getIndex(CdmLightExportTable.UNPLACED)] = taxonNode.isUnplaced() ? "1" : "0"; |
|
| 367 |
csvLine[table.getIndex(CdmLightExportTable.DOUBTFUL)] = taxonNode.isDoubtful() ? "1" : "0"; |
|
| 363 | 368 |
Map<Language, LanguageString> notesMap = taxonNode.getStatusNote(); |
| 364 | 369 |
String statusNotes = ""; |
| 365 | 370 |
if (!notesMap.isEmpty() && notesMap.size() == 1) {
|
| ... | ... | |
| 373 | 378 |
} |
| 374 | 379 |
csvLine[table.getIndex(CdmLightExportTable.STATUS_NOTES)] = statusNotes; |
| 375 | 380 |
|
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csvLine[table.getIndex(CdmLightExportTable.UNPLACED)] = taxonNode.isUnplaced() ? "1" : "0"; |
|
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csvLine[table.getIndex(CdmLightExportTable.DOUBTFUL)] = taxonNode.isDoubtful() ? "1" : "0"; |
|
| 381 |
//process taxon line |
|
| 378 | 382 |
state.getProcessor().put(table, taxon, csvLine); |
| 383 |
|
|
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//descriptions |
|
| 379 | 385 |
handleDescriptions(state, taxon); |
| 380 | 386 |
} catch (Exception e) {
|
| 381 | 387 |
state.getResult().addException(e, |
| ... | ... | |
| 383 | 389 |
state.getResult().setState(ExportResultState.INCOMPLETE_WITH_ERROR); |
| 384 | 390 |
} |
| 385 | 391 |
} |
| 386 |
|
|
| 387 | 392 |
} catch (Exception e) {
|
| 388 | 393 |
state.getResult().addException(e, "An unexpected error occurred when handling the taxon node of " |
| 389 | 394 |
+ cdmBaseStr(taxonNode.getTaxon()) + ", titleCache:"+ taxonNode.getTaxon().getTitleCache()+": " + e.getMessage()); |
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