cdmlibcdm-dataportalcdm-servercdm-vaadincdm-webappcdmlib-appsserver-scriptstaxeditortaxongraph-viewutis-clientutis-coreutis-webapp
preparing for hibernate-c3p0 & commenting out all System.err.println
minor
new test for the delete method of TaxonNameDao
#1390
Altered ReferringObjectMetadataFactoryImpl to exclude bidirectional relationships where the replaced entity is the "owner" of the related entity (i.e. the relationship is mapped by @OneToMany & mappedBy != null) since those kind of relationships don't make sense in the context of a global replace method.
Updated ICdmEntityDao replace(T x, T y) and refresh(T t, LockMode lockMode, List propertyPaths) and added methods to IAnnotationDao
Added public T replace(T x, T y) to ICdmEntityDao, implementation and tests
Added an IIdentificationKeyDao to query across all identification key types
Added merge(T t, LockMode lockmode) and refresh(T t, LockMode lockmode) to allow developers to bypass the session & second-level cache (useful in some instances)
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