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/**
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* Copyright (C) 2020 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.api.service.config;
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import java.io.Serializable;
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import java.util.HashSet;
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import java.util.Set;
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import java.util.UUID;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
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/**
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* @author a.mueller
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* @since 30.11.2020
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*/
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public class SubtreeCloneConfigurator implements Serializable {
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private static final long serialVersionUID = 5599009171476893297L;
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//might be replaced by a TaxonNodeFilter in future (but requires treebuilding and handling for missing inbetween taxa a tree)
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private Set<UUID> subTreeUuids;
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private String newClassificationName = "Taxon subtree clone";
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private boolean reuseClassificationReference = false;
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//used only if reuseClassificationReferenceUuid == false
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private UUID classificationReferenceUuid;
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private Reference classificationReference;
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private boolean reuseTaxa = false;
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//used only if reuseTaxa == false
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private boolean includeSynonymsIncludingManAndProParte = true;
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//used only if reuseTaxa == false
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private boolean includeDescriptiveData = true;
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//used only if reuseTaxa == false
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private boolean includeMedia = true;
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//used only if reuseTaxa == false
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private boolean includeTaxonRelationshipsExcludingManAndProParte = false;
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//used only if reuseTaxa == false
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private boolean reuseNames = true;
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//used only if reuseTaxa == false
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private boolean reuseTaxonSecundum = true;
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//used only if reuseTaxa == false AND reuseTaxonSecundum = false
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private UUID taxonSecundumUuid = null;
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private Reference taxonSecundum;
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private boolean reuseParentChildReference = true;
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//used only if reuseParentChildReference == false
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private UUID parentChildReferenceUuid = null;
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private Reference parentChildReference;
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private TaxonRelationshipType relationTypeToOldTaxon;
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//used only if relationTypeToOldTaxon != null
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private boolean relationDoubtful = true;
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//used only if relationTypeToOldTaxon != null
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private UUID relationshipReferenceUuid = null;
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private Reference relationshipReference;
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/**
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* Creates a default instance with default values. E.g. reuseNames is <code>true</code>.
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* @param subTreeUuid
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* @param classificationName
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* @return
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*/
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public static SubtreeCloneConfigurator NewBaseInstance(UUID subTreeUuid, String classificationName
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){
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Set<UUID> subTreeUuids = new HashSet<>();
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subTreeUuids.add(subTreeUuid);
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return new SubtreeCloneConfigurator(subTreeUuids, classificationName,
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false, null,
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false, true, null,
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true, null,
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null,
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true
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);
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}
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public static SubtreeCloneConfigurator NewInstance(Set<UUID> subTreeUuids, String classificationName,
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boolean reuseClassificationReference, UUID classificationReferenceUuid, boolean reuseTaxa,
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boolean reuseTaxonSecundum, UUID taxonSecundumUuid, boolean reuseParentChildReference,
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UUID parentChildReferenceUuid, TaxonRelationshipType relationTypeToOldTaxon, boolean reuseNames){
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return new SubtreeCloneConfigurator(subTreeUuids, classificationName,
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reuseClassificationReference, classificationReferenceUuid,
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reuseTaxa, reuseTaxonSecundum, taxonSecundumUuid,
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reuseParentChildReference, parentChildReferenceUuid,
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relationTypeToOldTaxon,
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reuseNames);
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}
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// ******************************** CONSTRUCTOR ********************************/
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private SubtreeCloneConfigurator(Set<UUID> subTreeUuids, String newClassificationName,
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boolean reuseClassificationReference, UUID classificationReferenceUuid,
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boolean reuseTaxa, boolean reuseTaxonSecundum, UUID taxonSecundumUuid,
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boolean reuseParentChildReference, UUID parentChildReferenceUuid,
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TaxonRelationshipType relationTypeToOldTaxon,
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boolean reuseNames) {
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this.subTreeUuids = subTreeUuids;
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this.newClassificationName = newClassificationName;
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this.reuseClassificationReference = reuseClassificationReference;
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this.classificationReferenceUuid = classificationReferenceUuid;
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this.reuseTaxa = reuseTaxa;
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this.reuseTaxonSecundum = reuseTaxonSecundum;
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this.taxonSecundumUuid = taxonSecundumUuid;
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this.reuseParentChildReference = reuseParentChildReference;
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this.parentChildReferenceUuid = parentChildReferenceUuid;
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this.relationTypeToOldTaxon = relationTypeToOldTaxon;
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this.reuseNames = reuseNames;
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}
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// ******************** GETTER / SETTER ********************************/
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public Set<UUID> getSubTreeUuids() {
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return subTreeUuids;
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}
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public void setSubTreeUuids(Set<UUID> subTreeUuid) {
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this.subTreeUuids = subTreeUuid;
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}
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public String getNewClassificationName() {
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return newClassificationName;
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}
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public void setNewClassificationName(String newClassificationName) {
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this.newClassificationName = newClassificationName;
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}
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public UUID getClassificationReferenceUuid() {
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return classificationReferenceUuid;
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}
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public void setClassificationReferenceUuid(UUID classificationReferenceUuid) {
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this.classificationReferenceUuid = classificationReferenceUuid;
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}
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public UUID getTaxonSecundumUuid() {
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return taxonSecundumUuid;
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}
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public void setTaxonSecundumUuid(UUID taxonSecundumUuid) {
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this.taxonSecundumUuid = taxonSecundumUuid;
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}
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public UUID getParentChildReferenceUuid() {
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return parentChildReferenceUuid;
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}
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public void setParentChildReferenceUuid(UUID parentChildReferenceUuid) {
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this.parentChildReferenceUuid = parentChildReferenceUuid;
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}
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public TaxonRelationshipType getRelationTypeToOldTaxon() {
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return relationTypeToOldTaxon;
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}
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public void setRelationTypeToOldTaxon(TaxonRelationshipType relationTypeToOldTaxon) {
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this.relationTypeToOldTaxon = relationTypeToOldTaxon;
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}
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public boolean isReuseTaxa() {
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return reuseTaxa;
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}
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public void setReuseTaxa(boolean reuseTaxa) {
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this.reuseTaxa = reuseTaxa;
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}
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public boolean isReuseNames() {
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return reuseNames;
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}
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/**
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* @param reuseNames
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* @deprecated as it is not fully implemented yet and generally not recommended
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* to clone names in a database; see comments in #9349 why name cloning
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* needs to be done with care
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*/
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@Deprecated
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public void setReuseNames(boolean reuseNames) {
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this.reuseNames = reuseNames;
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}
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public boolean isReuseClassificationReference() {
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return reuseClassificationReference;
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}
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public void setReuseClassificationReference(boolean reuseClassificationReference) {
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this.reuseClassificationReference = reuseClassificationReference;
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}
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public boolean isReuseTaxonSecundum() {
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return reuseTaxonSecundum;
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}
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public void setReuseTaxonSecundum(boolean reuseTaxonSecundum) {
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this.reuseTaxonSecundum = reuseTaxonSecundum;
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}
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public boolean isReuseParentChildReference() {
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return reuseParentChildReference;
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}
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public void setReuseParentChildReference(boolean reuseParentChildReference) {
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this.reuseParentChildReference = reuseParentChildReference;
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}
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public boolean isRelationDoubtful() {
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return relationDoubtful;
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}
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public void setRelationDoubtful(boolean relationDoubtful) {
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this.relationDoubtful = relationDoubtful;
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}
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public UUID getRelationshipReferenceUuid() {
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return relationshipReferenceUuid;
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}
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public void setRelationshipReferenceUuid(UUID relationshipReferenceUuid) {
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this.relationshipReferenceUuid = relationshipReferenceUuid;
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}
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public Reference getClassificationReference() {
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return classificationReference;
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}
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/**
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* Sets the reference for the classification reference. Also the {@link #getClassificationReferenceUuid()
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* classification reference uuid} is set by this method.<BR>
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* This parameter is used only if <code>{@link #isReuseClassificationReference() reuse classification reference} == false</code>
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* <BR>
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* NOTE: Only use persistent references if configurator is not used within a single transaction.
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* @param parentChildReference
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*/
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public void setClassificationReference(Reference classificationReference) {
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this.classificationReference = classificationReference;
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}
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public Reference getTaxonSecundum() {
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return taxonSecundum;
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}
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/**
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* Sets the taxon secundum reference. Also the {@link #getTaxonSecundumUuid() taxon secundum reference uuid} is set by this method.<BR>
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* This parameter is used only if <code>{@link #isReuseTaxa() reuseTaxa} == false && {@link #isReuseTaxonSecundum()
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* reuseTaxonSecundum} == false</code>
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* <BR>
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* NOTE: Only use persistent references if configurator is not used within a single transaction.
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* @param taxonSecundum
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*/
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public void setTaxonSecundum(Reference taxonSecundum) {
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this.taxonSecundum = taxonSecundum;
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this.taxonSecundumUuid = taxonSecundum == null ? null : taxonSecundum.getUuid();
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}
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public Reference getParentChildReference() {
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return parentChildReference;
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}
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/**
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* Sets the reference for the parent child relationship. Also the {@link #getParentChildReferenceUuid()
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* parent child reference uuid} is set by this method.<BR>
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* This parameter is used only if <code>{@link #isReuseParentChildReference() reuse parent child reference} == false</code>
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* <BR>
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* NOTE: Only use persistent references if configurator is not used within a single transaction.
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* @param parentChildReference
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*/
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public void setParentChildReference(Reference parentChildReference) {
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this.parentChildReference = parentChildReference;
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}
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public Reference getRelationshipReference() {
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return relationshipReference;
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}
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/**
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* Sets the reference for the new taxon to old taxon {@link TaxonRelationship taxon relationship}.
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* Also the {@link #getRelationshipReferenceUuid() relationship reference uuid} is set by this method.<BR>
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* This parameter is used only if <code>{@link #relationTypeToOldTaxon() relationTypeToOldTaxon} != null</code>
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* <BR>
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* NOTE: Only use persistent references if configurator is not used within a single transaction.
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* @param parentChildReference
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*/
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public void setRelationshipReference(Reference relationshipReference) {
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this.relationshipReference = relationshipReference;
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}
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public boolean isIncludeSynonymsIncludingManAndProParte() {
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return this.includeSynonymsIncludingManAndProParte;
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}
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/**
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* If <code>true</code> the synonyms relationships of this taxon are cloned and attached to the new taxon.
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* <BR>
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* This parameter is used only if <code>{@link #isReuseTaxa() reuseTaxa} == false</code>
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*/
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public void setIncludeSynonymsIncludingManAndProParte(boolean includeSynonyms) {
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this.includeSynonymsIncludingManAndProParte = includeSynonyms;
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}
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public boolean isIncludeDescriptiveData() {
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return includeDescriptiveData;
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}
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/**
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* If <code>true</code> the descriptive data attached to this taxon are included in the copy
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* and attached to the new taxon.
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* <BR>
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* This parameter is used only if <code>{@link #isReuseTaxa() reuseTaxa} == false</code>
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*/
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public void setIncludeDescriptiveData(boolean includeDescriptiveData) {
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this.includeDescriptiveData = includeDescriptiveData;
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}
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public boolean isIncludeMedia() {
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return includeMedia;
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}
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/**
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* If <code>true</code> the media attached to this taxon are also attached to the new taxon.
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* Media itself are always reused.
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* <BR>
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* This parameter is used only if <code>{@link #isReuseTaxa() reuseTaxa} == false</code>
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*/
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public void setIncludeMedia(boolean includeMedia) {
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this.includeMedia = includeMedia;
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}
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public boolean isIncludeTaxonRelationshipsExcludingManAndProParte() {
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return includeTaxonRelationshipsExcludingManAndProParte;
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}
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/**
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* If <code>true</code> the taxon (concept) relationships to and from this taxon are also cloned.
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* This includes all taxon relationships except those for {@link TaxonRelationshipType#isAnyMisappliedName() any misapplied names}
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* and {@link TaxonRelationshipType#isAnySynonym() any (pro parte synonyms)}.
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* <BR>
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* This parameter is used only if <code>{@link #isReuseTaxa() reuseTaxa} == false</code>
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*/
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public void setIncludeTaxonRelationshipsExcludingManAndProParte(boolean includeTaxonRelationshipsExcludingManAndProParte) {
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this.includeTaxonRelationshipsExcludingManAndProParte = includeTaxonRelationshipsExcludingManAndProParte;
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}
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}
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