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/**
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* Copyright (C) 2018 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.api.service.dto;
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import java.util.HashSet;
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import java.util.Set;
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import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper;
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import eu.etaxonomy.cdm.model.molecular.AmplificationResult;
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import eu.etaxonomy.cdm.model.molecular.DnaQuality;
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import eu.etaxonomy.cdm.model.molecular.DnaSample;
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import eu.etaxonomy.cdm.model.molecular.Sequence;
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import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
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/**
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* @author k.luther
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* @since 02.08.2018
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*
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*/
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public class DNASampleDTO extends DerivedUnitDTO{
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private static final long serialVersionUID = -1050277075084265067L;
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private Set<SequenceDTO> sequences = new HashSet<SequenceDTO>();
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private Set<AmplificationResult> amplificationResults = new HashSet<AmplificationResult>();
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private DnaQuality dnaQuality;
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public static DNASampleDTO fromEntity(DnaSample entity){
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if(entity == null) {
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return null;
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}
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return new DNASampleDTO(HibernateProxyHelper.deproxy(entity, DnaSample.class));
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}
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public DNASampleDTO(DerivedUnit derivedUnit) {
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super(derivedUnit);
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DnaSample dnaSample = HibernateProxyHelper.deproxy(derivedUnit, DnaSample.class);
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Set<SequenceDTO> seqDtos = new HashSet<>();
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for (Sequence seq: dnaSample.getSequences()){
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seqDtos.add(new SequenceDTO(seq));
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}
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this.setSequences(seqDtos);
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this.amplificationResults = dnaSample.getAmplificationResults();
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this.dnaQuality = HibernateProxyHelper.deproxy(dnaSample.getDnaQuality(), DnaQuality.class);
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}
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public void setSequences(Set<SequenceDTO> sequences) {
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this.sequences = sequences;
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}
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public Set<AmplificationResult> getAmplificationResults() {
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return amplificationResults;
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}
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public void setAmplificationResults(Set<AmplificationResult> amplificationResults) {
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this.amplificationResults = amplificationResults;
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}
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public DnaQuality getDnaQuality() {
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return dnaQuality;
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}
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public void setDnaQuality(DnaQuality dnaQuality) {
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this.dnaQuality = dnaQuality;
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}
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public Set<SequenceDTO> getSequences() {
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return sequences;
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}
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}
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