EDIT

#5678: fix deletion of FeatureNodes and minor changes

advanced MediaDeletionConfigurator

Clean up

refactoring listByIds to loadByIds

#4366 ignoring test for short time

#4366 Transmissionengine aggregation of source references

#4366 aggregation of distribution sources implemented for by area aggregation

#4366 test for aggregation of distribution sources (byArea)

TransmissionEngine: modification to status compare function for case a==b

#5177 fixing tests which where broken after rebasing the TransmissionEngine-speedup on develop
- lower rank limit of for the aggregation was too high

fixing bugs related to the rank intervall in the TransmissionEngineDistribution

solving multiple problems in TransmissionEngine

• avoiding LIE by fetching the parentAreas for each batch
• skipping taxa not in specified rank interval

performance improvement

• avoiding cast
• avoiding sorting the list of taxa

performance logging

adding classificationLookup method to serice

attempt to reduce the overhead imposed by database access

typo

#5909 revert unwanted commit

#5909 fix failing test

Fix failing test for syn. sec. (#5902) and clean up a bit

#5852 dao, service and controler for taxonNode sibling retrieval

#5536

refactoring taxonNode controllers - return dtos from the service layer, support for #5887

Simplify taxonDao

refactoring NodeSortMode

minor

add limit and pattern to the uuid and titlecache methods

add limit and pattern to getTaxonNodeUuidAndTitleCacheOfAcceptedTaxaByClassification

Further develop the CDM preferences #3958

Updating develop poms back to pre merge state

Updating develop poms to hotfix version to avoid merge conflicts

Add generic find(clazz, uuid) method #5853

minor

Cleanup

Updating develop poms back to pre merge state

updating develop poms to master versions to avoid merge conflicts

updating poms for 4.2.0-SNAPSHOT development

Show stable identifier in specimen page (if present) #5515

Remove generics from Reference in cdmlib (except for cdmlib-model) #5830

Javadoc

new method to get UuidAndTitleCache objects with nomenclatural
titleCache for teamOrPersonBase

Set failing SecurityTest to ignore #5829

Inline Country term to avoid NPE #5765

fix polytomouskey delete, if root node is null

Add preferred stable URI to Derived Unit Facade #5765

fix delete of polytomous keys

Updating develop poms back to pre merge state

updating develop poms to master versions to avoid merge conflicts

Fix failing test for DescriptionUtility

updating poms for 4.1.0-SNAPSHOT development

Model Updater for other H2 test databases

Update test H2 after model update to 4.0

Remove method agentsUsedAsUsers related to #5743

minor

minor

Remove bidirectionality for supplemental data #5743

Add test for bidirectional supplemental data #5743

Clean up AnnotationDao and AnnotationService

Update test data for xxxObj_type #3701

Adapt table and column names to hibernate 5 naming strategy #5369

... and some other changes to table/attribute names

Remove Autoincrement on AuditEvent.revisionnumber on MySQL #5718

• Not yet tested for H2 and PostGreSQL

small changes for moving taxonnodes

#5482 web services now support different orderBy modes

revert a small change in taxonservice

improve delete configurator for taxa and synonyms

Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop

smaller changes for fauna europaea import and csvNameExport

Fix order for areas #5677

Fix potential NPE

Reload type designation before deleting it to avoid caching conflicts.

Fix compilation error for Distribution comparator #5677

Implement natural ordering for distributions in data portal #5677

fix move taxonnode and remove null values from childrenlists in several places

Add IEventBaseService to application controller #5403

Adapt test to service method changes

Also return all specimens belonging to sub classes when specifying
SpecimenOrObservationBase as type

minor

Add uuid based method for deleting type designations #5490

minor

minor

TaxonNodeByNameComparator is not a component anymore and add configurable delete method for media

fix move synonym to another accepted taxon

Update cdmlib version from 3.13.0-SNAPSHOT to 4.0.0-SNAPSHOT

Refactor associated taxa assembly to include uuid #5611

workaround for delete of polytomous keynodes, because of null values in children list

removing all (almost all) spy6 references and dependencies

cosmetics

Fix for DnaSample relation to Identifier, Annotations, etc.

• Add DnaSample to metaDef for Any relation in package-info.java
• added test for SampleDesignation for DnaSample

Fix failing test

Fix et al. for collectors #5568

Adjust specimen delete configurator

• when isDeleteChildren is true then also molecular data will be deleted
• specimen descriptions will always be deleted

Add missing Transactional annotation to delete method

Fix CCE in DefinedTermDaoImpl.getPartOf (#5556) and make deproxy more
generic

Merge branch 'hotfix/3.12.4' into develop

Conflicts:
cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeCacheStrategyInjectionTest.java
cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeCacheStrategyInjectionTest.xml

updating poms for branch'hotfix/3.12.4' with non-snapshot versions

Fix strategy injection test

Fix test for cache strategy loading

Fix javassist error for specimen cache strategy loading #5545

Fix test for cache strategy loading

Fix javassist error for specimen cache strategy loading #5545