EDIT

minor

minor

Remove bidirectionality for supplemental data #5743

Add test for bidirectional supplemental data #5743

Adapt table and column names to hibernate 5 naming strategy #5369

... and some other changes to table/attribute names

Remove Autoincrement on AuditEvent.revisionnumber on MySQL #5718

• Not yet tested for H2 and PostGreSQL

#5482 web services now support different orderBy modes

Fix compilation error for Distribution comparator #5677

Implement natural ordering for distributions in data portal #5677

Adapt test to service method changes

Also return all specimens belonging to sub classes when specifying
SpecimenOrObservationBase as type

minor

Add uuid based method for deleting type designations #5490

minor

Fix for DnaSample relation to Identifier, Annotations, etc.

• Add DnaSample to metaDef for Any relation in package-info.java
• added test for SampleDesignation for DnaSample

Fix failing test

Fix et al. for collectors #5568

Adjust specimen delete configurator

• when isDeleteChildren is true then also molecular data will be deleted
• specimen descriptions will always be deleted

Fix CCE in DefinedTermDaoImpl.getPartOf (#5556) and make deproxy more
generic

Merge branch 'hotfix/3.12.4' into develop

Conflicts:
cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeCacheStrategyInjectionTest.java
cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeCacheStrategyInjectionTest.xml

Fix strategy injection test

Fix test for cache strategy loading

Fix javassist error for specimen cache strategy loading #5545

Fix test for cache strategy loading

Fix javassist error for specimen cache strategy loading #5545

Merge branch 'hotfix/3.12.3' into develop

Conflicts:
cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java
cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceSearchTest.java

Implement preliminary Specimen cache strategy using facade cache
strategy

adapt test for searching for name without taxon

adapt test for searching for name without taxon

#5477 circumventing bug that broke test and creating nwe test to reproduce the issue

Add assignmentStatus as parameter to occurrence retrieval in service
method

fixing problems regarding lucene search after merge - one test still failing

resolving conflicts after merge of ticket_4716 into develop

organizing imports

organizing imports

#4761 updating means to obtain the IndexManager to new hibernate search api and extending according test

#4761 fixing broken area filter join query, by circumventing a bug in lucene LUCENE-4824 (numeric fields not supported in join queries)

#4716 fixing proplems with testdata by making use of the CleanSweepInsertLoadStrategy.class

split test for moveDescriptionElements into two tests, on or the correct deletion and the other one for resaving the taxonDescription

changes for #4960 and #4959

#4716 IndexDocValue relates issues solved, indexing now without exceptions, most tests in TaxonServiceSearchTest successful

TaxonServiceSearchTest: assertions no longer unnessecarily doing object comparision, relying on auto boxing is better!

Minor

fix the term delete test

#4716 upgrading spring xsd schema version to 4.0

Cleanup

Set failing DescriptionService test preliminary to ignore #4716

Fix compile issues after rebase #4716

Add some more gitignore and comment ignore TaxonSearchTest #4716

Update to hibernate 5 for cdmlib-io #4716

migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716

• (except for hibernate search tests)
• including new spring-config structure

Upgrade to hibernate 5 with persistence tests running #4716

Further adapt to new jackson and new lucene version #4716

Fix associated specimen retrieval for name determination

• added test

Added test for taxon (name) <-> specimen association

fix #5341 and fixing deletion of specimen

Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702

Extended test for specimens associations

Add test for all possible specimen associations

fixing #4878

Fix associated specimen retrieval for name determination

• added test

Fix failing tests

• adapted to new return type

When retrieving associated specimens retrieve all
IndividualsAssocations, TypeDesignation, Determinations

fix merge description into another description

fixing #5303

Fix sequence and single read deletion #5200

• adapted tests

Add test for deleting SingleRead that is attached to multpile seuqences
#5200

Added test for taxon (name) <-> specimen association

fixing cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/FeatureNodeDeletionConfigurator.java

fix #5341 and fixing deletion of specimen

#5318

Fix typo

Fix moving of derivatives with null parent (+test)

fix #5104 and #5328

Allow null for parent when moving derivatives

fix #5330

fix #5179 and adapting the tests because the classification argument is needed now

fix delete of specimen with specimenDescriptions

Add vocabulary list method by term types #3843

Cleanup SecurityTest

Adapt listeners and tests to new pre-insert strategy #5066

#5256 Add test for description reference problem

minor

fixing move Accepted taxon to synonym

more detailed measuring time of accumulation in TransmissionEngineDistribution for performance testing

adding more test cases for ClassificationService

• testTaxonNodeByNameComparator now with hybrid name
• testlistRankSpecificRootNodes better testing of pager

simplifying test code

adapting test to modified test data

fixing broken pager mechanism for listRankSpecificRootNodes() and improving test coverage

set the test to ignore, because the funcionality is not implemented yet.

revert the local changes

changes for tcs import, fixing taxonnodecomparator, polytomouskey deletion and converting from person to team and team to person

changes for deleting polytomous key nodes

#4408 fixing a bug regarding fallback areas and adding more tests

merging fallbackAreaFilter rule into hiddenArea rule

all rules separated

Avoid concurrent modification during deep delete.

• cloned derivation events of child derivatives
• added test

Correct test to save taxon before making servive layer call

#5056 Refactored 'save' call to return saved entity

test for fallbackArea rule in DescriptionUtility.filterDistrubution for EuroPlusMed - #4408