EDIT

ref #9114 further adapt jsonConfigurations and add new constructor to URI wrapper

ref #9114 adapt json mapping to new URI wrapper

ref #9265 removing NomenclaturalSourceBeanProcessor since it causes many hard to controll LazyInitializationExcptions in web services

ref #9265 introducing NomenclaturalSourceBeanProcessor to add nomenclaturalCitation to web service responses

ref #9279 make WorkingSet a Map again and fix typo in RegistrationDTO attribute and fix jsonConfigurations

ref #9252 piping baseofRecord through KeyTermValueProcessor

ref #9249 ref #3978 harmonization of FieldUnit and Derivate DTOs:

• using pointDTO in all webservices
• cleaning up FieldUnitDTO and DerivateDTO
• using CollectionDTO on DerivateDTO

ref #9238 removing quick fix allied in 4d6b5667 and adapting config for json serialization

ref #9238 extending SpecimenTypeDesignationDTO with more fields and associated DTOs, introducing ReferenceDTO, supressing unwanted and dangerous fields of RegistrationDTO

ref #6581 ref #9222 adding PolytomousKeyNodePortalController and missing name.nomenclaturalSource init strategys in TaxonPortalController

ref #9204 adapt all spring application context xml configuration files to spring schema version 4.3

ref #9222 ref #6581 adapting web services to single sourced classes

ref #9102 TaxonNodeDto with statusNote, nodeStatus as status and status as TaxonStatus

using TaxonNodeDto instead of TaxonNodeDtoBeanProcessot for multiple webservices and adding sortMode parameter

ref #8134 fixing missing initialization of TaonNode.statusNode and source.citation

Revert "ref #6113 temporarily remove kmlMarshaller"

This reverts commit d591d6d83894d7a93fd2fd4295f3314c69cbc7d6.

ref #6113 temporarily remove kmlMarshaller

Revert "ref #6113 temporarily remove kmlMarshaller"

This reverts commit 6a4d8b86f4322567cc0d52f04270a9903dfe026b.

ref #6113 temporarily remove kmlMarshaller

ref #6113 producing more complete kml for DerivedUnits & general controller for HTTP OPTIONS requests

ref #8673 CdmLinkSourceBeanProsessor disabled and init strategy for cdmSource.target

ref #8673 CdmLinkSourceBeanProsessor to serialize CdmLinkSource as TypedEntityReference

fix #8570 adding PolytomousKeyNode.otherNode to web service response

fix #8538 serialization of TextualTypeDesignation.text as text_l10 implemented in TypeDesignationBaseBeanProcessor and fixing minor probelms related to AbstractModifiableThingBeanProcessor

Revert "minor - fix merge conflict"

This reverts commit fc3932ac4dd186b6f5809863356912f949ae202d.

minor - fix merge conflict

fix #8395 avoiding NPE in NameCatalogueController.getDatasetIdName()

ref #6794 adapt jsonConfigurations.xml from FeatureTree/Node -> TermTree/Node

generic webservice method for all cdm entitiy list controllers to search by Restriction

ref #5857, ref #8319 adding TypedEntityRefernces to nom status TaggedText and fixing json serialization for EntitiyReferences in taxon.taggedTitle processing

ref #8162 updates to test data in further metadata

adjusting loglevel of bean initializers

ref #7578 adding missing json config entry for the generic api

fix #7578 DefaultValueProcessor to serialize all null numbers as null

fix #6967 implementing registration/identifier endpoints for domain entity and DTO api

ref #7508 further fix term representation web service

cleanup

fix #7269 implementing RedmineRegistrationMessageService

ref #6964 base implementation of the RegistrationController

fix #6948 ref #6324 commenting and removing broken dozer mapping for synonymRelations

fix #6368 rename table and class TaxonNameBase

ref #6368 remove some further occurrences of NonViralName

ref #2939 taking configurations out of the compenent scan\n, a more finegraned strategy is needed for the variety of situations we have to deal with

ref #2939 renaming moved class references in log4j files

fix #2939 dynamic configuration of the ehcache store location per remote instance

ref #2939 refactoring CdmCacher to use cachemanger spring bean - not fully working yet

ref #6324 adding FIXME comment

fix #6268 initializing decriptions of media entities for portal webservices

fix #4594 fix includeEntity issue for findByMarker and findByIdentifier methods

doc

ref #6211 avoiding to deep initialization of synonym groups

rel #6118 switching from xml to java based web security configuration

Rename TaxonNodeDao to TaxonNodeDto

disabling csrf mode in spring security for remoting endpoints

Adapt log4j.properties to hibernate deprecated logging problem

#4716 upgrading spring xsd schema version to 4.0

#5229 implementing output of TaxonBase.getTaggedTitle in web services
- turning the TaxonBeanProcessor into TaxonBaseBeanProcessor
- adding taggedTitle to the taxon instances returned by the portal service

Allow authenticated access for users with all roles

DeleteResult : made serializable
remote-security : added remoting url intercept
remoting-services : made user service public
web.xml : added filter chain for securing remoting services

rename Reference.authorTeam -> authorship #4432

rename Reference.authorTeam -> authorship #4432

merge update from trunk

fixing #4151 (AdvancedBeanInitializer causes problems when initializing taxonnode hierarchies)

refactoring taxon controllers and thus solving #2595 (portal/taxon/{uuid}/accepted/{uuid} producing too big data objects)

fixing #4112 (portal/taxon/{uuid}/accepted/{uuid} takes exceedingly much time in specific cases) and #2595 (portal/taxon/{uuid}/accepted/{uuid} producing too big data objects) this also solves the according issue mentioned in #3336 (Improve overall dataportal page loading performance)

add new webservice for exporting occurrences for a specific taxon uuid

Spring Security configuration added for remote and web app

working on multilanguage representations in REST services for DescriptionElements and StateData

remote.xml : added simple rdf marshaller (named rdfMarshaller) for the web service rdf responses
RdfViewTest, OaiPmhViewTest : changed SpringBeanByType annotation to SpringBeanByName since we have now two marshallers (remote.xml)
RdfView, XmlView, OaiPmhResponseView : added qualifier for autowired marshaller since we now have two marshallers (remote.xml)...

TreeNodeBeanProcessor to suppresses the redundant output of distribution.area in distribution trees

moving all beaninitializer classes to new package 'eu.etaxonomy.cdm.persistence.dao.initializer'

merge trunk to cdm-3.3 branch

first implementation of new molecular package #3360

changed cache folder to save under user home dir

Remove GenBankAccession class, Spatium for EN_DASH and some minor stuff for v3.3

marker.markerType always initialized and serialized

Improvements to TransmissionEngineDistribution, basic monitoring added and new service and dao methods for pageRankSpecificRootNodes()

renaming TransmissionEngineOccurrence to TransmissionEngineDistribution

bugfix for transaction in ExtensionMapper and adapting Proxy narrorwing logging, upgrade log4j version to 1.2.17

circumventing missing sequence service to get annotations

missing fields for dna sample display for #3329 (Implement DNASample for Dataportal display)

Added a new Controller and DTO classes to create a flattened structure for presentation of Polytomous keys.

whitespace

fixing #3216 (specimens: type specimens should be displayed with type status)

StateData and States in web services

autoinitialization of termbase.references and point.exactlocation (indirectly)

deeper initialization of DerivationEvent

introducing DataSourceProperties for making xsl file locations configurable

score display for #2942 (implement search frontend for findTaxonByDescriptionElementFullText) and fixing some issues

missing bits for #476: Implement free-text search methods for TaxonBase and TextData

adding documentation

Added json configuration for name_catalogue called 'nameCatalogueJsonConfig'

merging revisions 14601:14603, 14653:14683 from branches/cdmlib/vibrant-index into trunk (contains: IdentifyableListController, jsonp support for REST service)

Merging r13268 through r14040 from trunk/cdmlib into branches/cdmlib-unitils3

first attempt in fixing test environment for cdmlib-services

hibernate fulltext search & refactoring getTaxaByName*() method headers

related to #2664 (Specimen maps are not shown in cyprus dev portal) - now the occurrence map is colored

cdmlib part of fixing #2482 (Dataportal does not show features)

fixing #2561 (allow suppressing display of specific annotations)

fixing #2510 (ehcahe FileNotFoundException (Permission denied))